| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,688,879 | C→A | 6.8% | pseudogene (467/753 nt) | bcsQ ← | involved in cellulose production, minD superfamily (pseudogene) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,688,879 | 0 | C | A | 6.8% | 758.3 / 19.9 | 204 | pseudogene (467/753 nt) | bcsQ | involved in cellulose production, minD superfamily (pseudogene) |
| Reads supporting (aligned to +/- strand): ref base C (112/78); new base A (11/3); total (123/81) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
Only 100 of 208 total aligned reads displayed.
TCGCTTCATCACGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTGTAAGCCGG > CP009273/3688733‑3689026 | tCGCTTCATCACGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCg > 2:1668728/1‑148 (MQ=255) gCTTCATCACGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGa > 1:295205/1‑148 (MQ=255) cTTCATCACGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGat < 2:2504022/148‑1 (MQ=255) cTTCATCACGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGat > 2:736699/1‑148 (MQ=255) cTTCATCACGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGat < 2:614005/148‑1 (MQ=255) cTTCATCACGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGat > 2:599476/1‑148 (MQ=255) ttCATCACGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGata < 2:3166547/148‑1 (MQ=255) tcaCGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGc > 2:508154/1‑148 (MQ=255) cGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGt < 1:1210174/148‑1 (MQ=255) cGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTAGGATATGGCAGt > 1:2004204/1‑148 (MQ=255) atgaatgaGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTg > 2:3077231/1‑148 (MQ=255) tgaatgaGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTAGGATATGGCAGTTgg > 2:659791/1‑148 (MQ=255) gaatgaGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGc < 1:3290105/148‑1 (MQ=255) gaatgaGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGc > 1:2057820/1‑148 (MQ=255) aatgaGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCa > 2:2373744/1‑148 (MQ=255) cGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTg > 2:2120044/1‑148 (MQ=255) cGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTg < 1:2923363/148‑1 (MQ=255) cGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTg > 2:1445700/1‑148 (MQ=255) cGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTAGGATATGGCAGTTGGCATCCACATTg > 1:3182466/1‑148 (MQ=255) ggCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGa < 2:1611314/148‑1 (MQ=255) gCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGAc > 2:2796681/1‑148 (MQ=255) gCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGAc > 2:2747007/1‑148 (MQ=255) gTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGAt < 2:1720224/148‑1 (MQ=255) aaTCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTg < 1:829356/148‑1 (MQ=255) aTCGGCGCTGGCTTTGCAACCAAAGCTGGTAAGTATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGc > 2:1780929/1‑148 (MQ=255) cGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCa < 1:2507303/148‑1 (MQ=255) ggCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAg > 1:469413/1‑148 (MQ=255) cgcTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCg < 1:1540808/148‑1 (MQ=255) cgcTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCg < 1:3183260/148‑1 (MQ=255) gcTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGa < 1:3278716/148‑1 (MQ=255) tGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGt < 2:2913333/148‑1 (MQ=255) tGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGt < 2:1264438/148‑1 (MQ=255) ggCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTg < 1:1771234/148‑1 (MQ=255) ggCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTg < 1:2925439/148‑1 (MQ=255) cTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGAt > 2:2478316/1‑148 (MQ=255) cTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGAt > 1:823010/1‑148 (MQ=255) cTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGAt < 2:788543/148‑1 (MQ=255) aCCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACaa < 1:2373744/148‑1 (MQ=255) aCCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAAAATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACaa > 2:887960/1‑148 (MQ=255) ccAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACaaa > 2:1356665/1‑148 (MQ=255) ccAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACaaa > 2:1356676/1‑148 (MQ=255) cAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAAc > 1:239857/1‑148 (MQ=255) aaGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTc > 2:2022873/1‑148 (MQ=255) aGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTca > 2:2795862/1‑148 (MQ=255) gCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTcag > 2:756332/1‑148 (MQ=255) cTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTcagc > 2:1570530/1‑148 (MQ=255) ggTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTcagcag > 2:380222/1‑148 (MQ=255) ggTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTcagcag > 1:1454554/1‑148 (MQ=255) tAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCt > 1:433358/1‑148 (MQ=255) aaTATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCtgg < 1:332865/148‑1 (MQ=255) aaTATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCtgg > 2:1936279/1‑148 (MQ=255) atatCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCtggt > 2:1001022/1‑148 (MQ=255) tatCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCtggtg < 1:2478165/148‑1 (MQ=255) atCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCtggtgg > 1:1071948/1‑148 (MQ=255) atCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCtggtgg > 2:2261192/1‑148 (MQ=255) tCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTggg < 1:1051079/148‑1 (MQ=255) cGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGt > 1:2624462/1‑148 (MQ=255) tCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTa > 1:2722036/1‑148 (MQ=255) gAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTAGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTg > 1:1900630/1‑148 (MQ=255) aCCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCg < 1:1288562/148‑1 (MQ=255) aCCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCg < 1:2604066/148‑1 (MQ=255) ccTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGa > 1:86545/1‑148 (MQ=255) ccTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGa > 2:2613013/1‑148 (MQ=255) aCTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCa < 1:1226482/148‑1 (MQ=255) gCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCa < 1:2668495/148‑1 (MQ=255) ggAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTaa < 1:394370/148‑1 (MQ=255) gAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAg < 1:956781/148‑1 (MQ=255) gAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAg < 1:203930/148‑1 (MQ=255) gAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTAGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAg < 1:1104968/148‑1 (MQ=255) aaGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGt < 1:1187364/148‑1 (MQ=255) aaGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGt < 1:1363420/148‑1 (MQ=255) aaGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGt < 1:3017563/148‑1 (MQ=255) aTTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGAtt > 2:2732958/1‑148 (MQ=255) aaaTATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCa > 1:2089412/1‑148 (MQ=255) aaaTATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCa > 1:2089367/1‑148 (MQ=255) atatGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACt > 1:2773133/1‑148 (MQ=255) atatGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACt > 1:380365/1‑148 (MQ=255) gtgCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTa > 2:1433111/1‑148 (MQ=255) cgcCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACg < 2:818685/148‑1 (MQ=255) cgcCATCAGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACTTTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACg < 2:3033167/148‑1 (MQ=255) ccATCCGGCAGCTCTTGCTGATGCAGTCGGATATGGCAGTTGGAATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGcc < 1:1234757/148‑1 (MQ=255) ccATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGcc > 2:44935/1‑148 (MQ=255) aTCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCg > 2:3279795/1‑148 (MQ=255) tCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGc > 1:548244/1‑148 (MQ=255) ccGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCt > 2:741645/1‑148 (MQ=255) ccGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCt > 2:1273092/1‑148 (MQ=255) cAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCt > 1:836011/1‑148 (MQ=255) cgcTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCtttt > 2:2258183/1‑148 (MQ=255) cTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAg < 2:2409208/148‑1 (MQ=255) ttGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGt < 2:1020974/148‑1 (MQ=255) gATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTg < 1:2709434/148‑1 (MQ=255) aTGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTGt > 2:403146/1‑148 (MQ=255) aTGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTGt > 2:403101/1‑148 (MQ=255) aTGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTGt > 2:679947/1‑148 (MQ=255) gCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTGTaa > 2:1174308/1‑148 (MQ=255) gTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTGTAAGcc > 1:169712/1‑148 (MQ=255) tCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTGTAAGCCg > 1:1120320/1‑148 (MQ=255) tCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTGTAAGCCg > 2:1666949/1‑148 (MQ=255) cGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTGTAAGCCgg < 1:2261164/148‑1 (MQ=255) cGGATAGGGCAGTGGGCCACCACAGTGACGATTGCCAGCGAGGGATCGCACAAACACCGCAGCGGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTGTAAGCCgg < 1:2261354/148‑1 (MQ=255) | TCGCTTCATCACGATGAATGAGCATCGGCAGTAATCGGCGCTGGCTTTGCAACCAAAGCTGGTAAATATCGTCCTGAACCTGACTGCCAATACGGAAGTCATTAATCAAAATATGTGCGCCATCCGGCAGCGCTTGCTGATGCAGTCGGATATGGCAGTTGGCATCCACATTGACGATTGCCAGCGAGTGATCGCACAAACTCAGCAGCTGGTGGGTTATCTGCGAGGCATCACGCGGTAAGTCGATTAAAATCCACTGGTAACGCCCGCTGGCTTTTAGTTGCTGTAAGCCGG > CP009273/3688733‑3689026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |