| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,779,281 | C→G | 7.2% | A221G (GCT→GGT) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,779,281 | 0 | C | G | 7.2% | 504.5 / 2.2 | 177 | A221G (GCT→GGT) | gpmM | phosphoglycero mutase III, cofactor‑independent |
| Reads supporting (aligned to +/- strand): ref base C (79/82); new base G (6/9); total (85/92) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 180 total aligned reads displayed.
AATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAA > CP009273/3779134‑3779426 | aaTTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGc < 2:3189886/148‑1 (MQ=255)aaTGTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGc < 2:3189883/148‑1 (MQ=255) tttGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTg < 1:2956155/148‑1 (MQ=255) tttGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTg < 2:127056/148‑1 (MQ=255) gCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGtt > 1:1758320/1‑148 (MQ=255) cgcgCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTg < 1:340731/148‑1 (MQ=255) cgcgCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTg < 1:340752/148‑1 (MQ=255) cgcgCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTg < 2:1729240/148‑1 (MQ=255) cgcgCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTg < 1:705833/148‑1 (MQ=255) cTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAgg < 1:2260384/148‑1 (MQ=255) tGGGCAAAGGCCGCGTAGCGTCCATCATTTGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGgc < 2:2512048/148‑1 (MQ=255) gggCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGgct > 1:267206/1‑148 (MQ=255) ggCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGgctg > 1:3150299/1‑148 (MQ=255) ggCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGgctg < 1:45789/148‑1 (MQ=255) gCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGgctgc < 1:3003257/148‑1 (MQ=255) aaGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTa < 2:2616260/148‑1 (MQ=255) aGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTAt < 2:859673/148‑1 (MQ=255) ggCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATg > 2:2980031/1‑148 (MQ=255) gCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGc > 2:656483/1‑148 (MQ=255) gCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGc > 2:2054398/1‑148 (MQ=255) gCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGc > 2:2054430/1‑148 (MQ=255) gCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGc > 2:2219655/1‑148 (MQ=255) ccGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCt < 1:999500/148‑1 (MQ=255) gcgTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTcg < 1:573575/148‑1 (MQ=255) gTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTcgcg < 2:2249020/148‑1 (MQ=255) tAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGcga < 2:252341/148‑1 (MQ=255) tAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGcga > 2:2909608/1‑148 (MQ=255) gCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGcgacg > 1:770800/1‑148 (MQ=255) gCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGcgacg > 1:2166867/1‑148 (MQ=255) cGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGcgacga < 2:1998040/148‑1 (MQ=255) cGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTGATGCTCGcgacga > 2:2639419/1‑148 (MQ=255) tCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGaaa < 1:524416/148‑1 (MQ=255) tCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGaaa < 2:704876/148‑1 (MQ=255) ccATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGaaaa < 2:200539/148‑1 (MQ=255) catcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGAACTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAat < 1:1064996/148‑1 (MQ=255) tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGGAGGCTGCTTATGCTCGCGACGAAAatga > 1:455420/1‑148 (MQ=255) tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAatga < 1:2541230/148‑1 (MQ=255) tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAatga < 1:2259618/148‑1 (MQ=255) ttGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAAtgatga < 2:2983700/148‑1 (MQ=255) ttGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAAtgatga > 2:1165807/1‑148 (MQ=255) tGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGGTGGTTTGCAGGCTGCTTATGCTCGCGCCGAAAATGATGaa > 1:1535663/1‑148 (MQ=255) tGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGaa < 2:765680/148‑1 (MQ=255) ggTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCGTATTCTCGCCCCGAAAATGATGAAt > 1:897536/1‑148 (MQ=255) tCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCTTATGCTAGCGACGAAAAATATGAATTc > 1:2542957/1‑148 (MQ=255) tCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTGGCTGGTTTTAACGCTGCTTATTCTCGCGACGAAAAAGATTaaata > 1:3085273/1‑145 (MQ=255) tactacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCGTATGCTCGCGACGAAAATGATGAATTCGTGa > 1:3270643/1‑148 (MQ=255) ctacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGaaa < 2:1311500/148‑1 (MQ=255) ctacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGaaa < 1:2011119/148‑1 (MQ=255) acGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGc < 1:2678033/148‑1 (MQ=255) acGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGc > 2:724115/1‑148 (MQ=255) acGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGAGGAATTCGTGAAAGc > 2:2847985/1‑148 (MQ=255) tGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGt > 1:2285906/1‑148 (MQ=255) gACCGCGATACCCGTTGGGATCGCGTAGAAAAAGCTTTTGCCCTGCTGACTGGGGCGCTGGGCGCGTTCCAGGCCTATACCGCCGTTGCTGGTTTGCTGGCTGCTTATGCTCGCGACTAAAATGATGAATGCGTGAAAGCGACCGTTa < 2:2255105/148‑1 (MQ=255) aCCGTTGGGATCGCGTATAAAAAGCTTATGACCTGCTGACTCTGGCGCTGGGCGAGTTCCAGGCCGATCCCGCCGTTGCTGTTTTGCAGGCTGCTTATGCTCGCGACGAAATTGATGATTTCGTGAACGCGACCGTTATCCGTGCTGa < 2:3072141/148‑1 (MQ=255) aCCGTGGGGAGCGCGTATAAAAAGCTTATCACCTGCTGACTCTGGCGCTGGGCGAGTTCCCGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGATTATGCTCGCGACGAAATTGATGAATTCGTCAAAGCGACCGTTATCCGTGCTGa < 2:2793403/148‑1 (MQ=255) cGTTGGGATCGCTTAGAAAAAGCTTATCACCTGCGGACTCTGGCGCAGGGCGTGTTCCAGCCCGATACCGCCGTTGCTGGTTTGCAGGCTGATTATGCTCGCGACGAAAATGATGAATTCGTTAAAGCGACCGTTATCCGTGCTGAAg < 2:2328963/148‑1 (MQ=255) ttGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGt > 2:2620173/1‑148 (MQ=255) ggATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAg > 2:101757/1‑148 (MQ=255) cgcgTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCGGGTTTGCACGCGGCTTATGCTCGCGACGAAAAAGATGAATTCGTGAACTCGACCCTTATCACTGCTGAAGGTCATCCAg > 1:113790/1‑148 (MQ=255) cgTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGAc > 2:3247208/1‑148 (MQ=255) gAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCgg > 2:2364077/1‑148 (MQ=255) aaaaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTTGTGGGTTGCAGGCTGCTTATGCTCGCGACGAAAATTATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCACACGCGGc > 1:1511877/1‑148 (MQ=255) aaaaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGGTATCCGTGCTGAAGGTCAGCCAGACGCGGc > 1:3231268/1‑148 (MQ=255) aaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCGGGTTTGCAGGCTGCTGATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCaa > 1:1599372/1‑148 (MQ=255) aGCTTCTGACCTGCTGACTCGGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAATTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATg < 2:1624989/148‑1 (MQ=255) aGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATg < 2:2432739/148‑1 (MQ=255) gCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATgg > 2:554845/1‑148 (MQ=255) tATGCCGTGCTGACTGTGGCGCTGGGCGTGTCCCCGGCGGATACGGCGGTTGGTGTTTTCCCGGCTGATTAGGCACGCGACTAAATTTTTTAATTCGTCAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAg < 1:1165807/148‑1 (MQ=255) aTGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGa < 1:2182816/148‑1 (MQ=255) aTGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGa < 2:1373526/148‑1 (MQ=255) aCCTGCTGACTCTGGCGCCGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACgg < 2:943288/148‑1 (MQ=255) ctgctgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCg > 1:1042564/1‑148 (MQ=255) tgctgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGGGGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCCGACGCGGCAATGGAAGACGGCGa > 1:1255474/1‑148 (MQ=255) tgctgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCACGCTGCTTATTCTAGCGACGAAAATGATTAATTCGTGAAATCGACCCTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAAAGGAAGACCGCGa > 1:215224/1‑148 (MQ=255) ctgACTCGGGCGCCGGGCTATTCCCCGGCCTATACCGCGTTGGGTGGTTTGCTGGGTGCTTATGCTCGCTACTAAATTTTTGATTTCGTCAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATg < 1:1757129/148‑1 (MQ=255) gACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTGGGGGGTTTGCAGGCTGCTTATTCTCGCGACGAAAATGATGAATTCGTGTAAGCGACCGGTATCCGTGCGGTAGGTCAGCCAGACGCCGCCATGGAAGACGGGGATGCa > 1:288540/1‑148 (MQ=255) aCTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCAc > 2:1574025/1‑148 (MQ=255) aCTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCAc > 2:1753783/1‑148 (MQ=255) aCTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCAc > 1:382180/1‑148 (MQ=255) ctGGCGCTGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATTATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGa < 2:1978049/148‑1 (MQ=255) cAGGGCGAGTTCCAGGCCGATACCGCCTTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACTAAAATGATGAATTGGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCa < 2:2825426/148‑1 (MQ=255) cAGGGCGAGTTCCAGGCCGATACCGCCGTTGCGGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAATCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCa > 2:965804/1‑148 (MQ=255) ggCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGa > 2:2878376/1‑148 (MQ=255) gCGTGTTCCAGGCCGATCCGGCCGTTGGTGGTTTGCTGGCTGGTTTTGCTCGCGACTAAAATTATGAATTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGaa < 2:3085273/148‑1 (MQ=255) gCGTGTTCCAGGCCGATACCGCCGTTGTTGTTTTGCAGGCTGCTTAGGCTCGCGACTAAATTTATTAATTCGTCAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGaa < 1:145665/148‑1 (MQ=255) aGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATTCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCGGAAGGTCAGCCAGACGCGGCCATGGAAGACGGCGATGCACTGATTTTCATGAACtt > 1:2669787/1‑148 (MQ=255) ttCCAGGCCGATACCGCCTTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATTAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTcc < 2:542277/148‑1 (MQ=255) ttCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTcc < 2:820669/148‑1 (MQ=255) tCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCg > 2:2726914/1‑148 (MQ=255) tCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCg > 2:33058/1‑148 (MQ=255) tCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTAATGAACTTCCg > 2:1572808/1‑148 (MQ=255) gccgggCCGATCCGGCGGTTGGTGGTTGGCCGGCTGGTTATGCTCGCGCCGAAAATGATTAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCg < 1:2897788/144‑1 (MQ=255) gCCGATACCGCCGTTGCTGGTTTTCAGGCTGCTTATTCTCGCGACGAAAAATATGAATTAGTGAAAGCCACCCTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTAATGAACTTCCGTGCTg > 1:1283255/1‑148 (MQ=255) gCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAAATAGTGAAAGCGACCGTTATACGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACAGATTTTCATGAAATTCCGTGCTg > 1:2929842/1‑148 (MQ=255) aTACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTAGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACcg > 2:1196855/1‑148 (MQ=255) aTACCGCCGTTGCGGGTTTTCAGGCTGCTTATGCTCGCGACGAAAATTATTAAATAGTGAAAGCGACCGTTATACGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACcg > 1:2438361/1‑148 (MQ=255) aCCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTGTCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACATCCGTGCTGACcgcg > 2:359005/1‑148 (MQ=255) cgccgTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATACGTGCTGAAGGTCAGCCAGACGCGGCAAAGGAAGACGGCGATGCACTGATTTTCATTAACATCCGTGCTGACcgcgcg > 1:718607/1‑148 (MQ=255) tGCTGTTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGaa < 2:422753/148‑1 (MQ=255) ggCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGaa < 2:2560971/147‑1 (MQ=255) | AATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAA > CP009273/3779134‑3779426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |