| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,832,308 | G→C | 8.2% | S234T (AGT→ACT) | yicL → | EamA family inner membrane putative transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,832,308 | 0 | G | C | 8.2% | 497.5 / 37.0 | 159 | S234T (AGT→ACT) | yicL | EamA family inner membrane putative transporter |
| Reads supporting (aligned to +/- strand): ref base G (53/86); new base C (5/8); total (65/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.86e-01 | |||||||||||
Only 100 of 161 total aligned reads displayed.
CGTTACCAGTCGTCGGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGAACGCTGCTGATT > CP009273/3832161‑3832453 | cGTTACCAGTCGTCGGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAg < 2:2150952/148‑1 (MQ=255) gTTACCAGTCGTCGGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGt < 2:147341/148‑1 (MQ=255) gTTACCAGTCGTCGGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGt < 1:1950159/148‑1 (MQ=255) gTTACCAGTCGTCGGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGt < 1:1950145/148‑1 (MQ=255) tACCAGTCGTCGGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTAAGTCCCAGACATGTAGTCt > 2:281643/1‑148 (MQ=255) cAGTCGTCGGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTa < 1:3115026/148‑1 (MQ=255) tcgtcgGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCt > 1:1214237/1‑148 (MQ=255) tcgtcgGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCt < 1:1365398/148‑1 (MQ=255) tcgtcgGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCt < 1:1365641/148‑1 (MQ=255) cgGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGaaa < 2:2851845/148‑1 (MQ=255) gCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAgg < 2:624285/148‑1 (MQ=255) cTGGAGTATGCTGAGTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGa < 2:1975359/148‑1 (MQ=255) gAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGca < 1:1869544/148‑1 (MQ=255) gAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGca < 2:1212868/148‑1 (MQ=255) gAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGAAATTTATTCTGTACCAGAAAGGAGca > 1:2098837/1‑148 (MQ=255) tATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑Caa < 2:667458/148‑1 (MQ=255) gCTGATTGGCGGTCTGATTCTGTTGCCTTTTTCTGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑Caatta < 1:813445/148‑1 (MQ=255) gCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTTTTTGTTGGTGATTGGTAAGTCCCTGACATTTATTGTGTACCTGAAAGGAGCA‑Caaaaa > 1:1446928/1‑145 (MQ=255) gCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑Caatta < 1:1714519/148‑1 (MQ=255) gCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTACTCTGTACCTGAAAGGAGCA‑Caatta < 2:2270122/148‑1 (MQ=255) cTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑Caattaa < 1:1772619/148‑1 (MQ=255) cTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑Caattaa < 1:1772514/148‑1 (MQ=255) cTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑Caattaa < 1:2620313/148‑1 (MQ=255) cTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑Caattaa < 2:3196321/148‑1 (MQ=255) cTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑Caattaa < 1:791118/148‑1 (MQ=255) tGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGTGTTTTTTTTTTGTTGGGC‑TTTGTACATCCCCGAAAATTATTCTTTAAAAGAAAAGAGCA‑Caaaaaattttc > 1:1416427/1‑145 (MQ=255) tGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTTTTTTGTTGTGATTTGTTCCTCCCAGACAATTATTATTTAACGGAAAAGAGCACCAATAAATTgc > 1:2237006/1‑147 (MQ=255) tGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTTTTTTGTGGGGATTTGTTCGTCCCAGACAGTTAGTCTGTTACAGAAAGGAGCC‑CAAATAAATggt > 1:2237469/1‑147 (MQ=255) tGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTTGTGGTCATTTGTACGTCCCAGAAATTTAGTATGTACCATAAACGAGCA‑CAAATAATTTGc > 1:2040384/1‑148 (MQ=255) cGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGTCATTTAGTCTGTACCAGAAAGGAGCA‑CAATTAATTGGCGGt > 2:2325695/1‑148 (MQ=255) cGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGt > 2:1832303/1‑148 (MQ=255) cGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGt < 2:2223675/148‑1 (MQ=255) ggTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTc < 1:1384552/148‑1 (MQ=255) tGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCaaa < 2:1916651/148‑1 (MQ=255) aTTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑GTTTTTATTTTGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTAACAGAAAGGAGCA‑CAAATAAATTGCGGTCCAAAAg > 2:560625/1‑148 (MQ=255) tCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTTGCGGTCCAAAAGcc > 2:3284051/1‑148 (MQ=255) tCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGcc > 2:292969/1‑148 (MQ=255) cTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCa < 1:672427/148‑1 (MQ=255) tGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTTCGTCCCTTACATTTAGTATGTACCTGAAAGGAGCA‑CAATTAATTTGCGGTCCAAAAGCCAGCAt > 2:2794600/1‑148 (MQ=255) tGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACCGTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCAt > 2:1493691/1‑148 (MQ=255) tGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCAt < 1:770769/148‑1 (MQ=255) tttATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAg < 2:19197/148‑1 (MQ=255) ttATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGc < 2:3243112/148‑1 (MQ=255) aTGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCtg < 2:2305167/148‑1 (MQ=255) aTGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTACTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCtg < 1:902297/148‑1 (MQ=255) gCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCtgtg < 1:1065689/148‑1 (MQ=255) gCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTACTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCtgtg < 2:3023957/148‑1 (MQ=255) gACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCCGCATTTTGAGCTGTGCAGa > 2:433048/1‑148 (MQ=255) gACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGa < 2:1432915/148‑1 (MQ=255) aCAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTTCCTGAAAGGAGCC‑CAATTAATTGGCGGTCCCAAAGCCCGCATTTTGAGCTGTGCAGaa > 2:917901/1‑148 (MQ=255) aCAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTTAAAGGAGCA‑CAAATAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGaa > 2:328233/1‑148 (MQ=255) cAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAAc < 1:3114441/148‑1 (MQ=255) aaGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAAcc < 2:2349832/148‑1 (MQ=255) aGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTACTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCa < 2:1769241/148‑1 (MQ=255) ggAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGGGATTTGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGATCA‑CAATTAATTTGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCAt > 1:3269756/1‑148 (MQ=255) aaCAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTTGGGGGCAATGGTACGGCCCGGACATTTAGTGTGTACCGGAAAGGAGCA‑CCAATAAGTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTa > 1:1091784/1‑148 (MQ=255) aaCAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTa < 2:2196400/148‑1 (MQ=255) aCAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTaa > 2:2874843/1‑148 (MQ=255) aaaCTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTTGTGGTCATTGGTACGTCCCTGACCTTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGt > 2:1751062/1‑148 (MQ=255) aaaCTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAAATAATTGGCGGTCCAAAAGCCAGCATTTTGAGCAGTGCAGAACCCTTAAgg > 2:1751056/1‑147 (MQ=255) aCTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAg > 2:3249858/1‑148 (MQ=255) cTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTatc > 2:1364569/1‑146 (MQ=255) tGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAgcgcg < 2:945368/148‑1 (MQ=255) cGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTa < 1:1668323/148‑1 (MQ=255) cGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTa < 2:1856423/148‑1 (MQ=255) tAACGGCAGTTTGATTCTGGCGT‑TTTTTTTTTTTGTGGTCATTTGTACGTCCCAGACATTTATTGTGTACCGGAAAGGAGCA‑CAAATAAATTGCGGTCCAAAAACCCCCATTTTTAGCTGGGCAGAACCATTAAGTATCGCGCTaagc > 1:2326061/1‑145 (MQ=255) tAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAAATGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTActc > 2:1624294/1‑148 (MQ=255) aaCGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTActct < 1:2387892/148‑1 (MQ=255) aCGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTActctc < 1:3230193/148‑1 (MQ=255) gTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTTGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTttgct > 2:1598074/1‑148 (MQ=255) tttGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTttgctg < 2:909262/148‑1 (MQ=255) gATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTttgctgttg < 2:407622/148‑1 (MQ=255) aTTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTttgctgttgc < 1:2906602/148‑1 (MQ=255) gCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGa < 2:348470/148‑1 (MQ=255) cGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTTCTGGGGAt > 2:2644571/1‑148 (MQ=255) cGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGAt < 2:2275603/148‑1 (MQ=255) cGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACAATTATTCTGTACCTGAAAGGAGCA‑CAATTAATTTGCGGTCCAAAAGCCCGCCTTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGGTGTTGGTGGGGAt > 1:2862016/1‑148 (MQ=255) tttttATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACg < 2:1366829/148‑1 (MQ=255) tttGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTcaca < 1:2511826/148‑1 (MQ=255) gtggtCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTAc > 2:1696688/1‑148 (MQ=255) tggtCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTAcc > 2:20083/1‑148 (MQ=255) ggtCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCg > 1:334503/1‑148 (MQ=255) gtCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCgg < 1:52162/148‑1 (MQ=255) gtCATTGGTACGTCCCTGACATTTACTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCgg > 2:110571/1‑148 (MQ=255) gtCATTGGTACGTCCCTGACATTTACTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACAATACCgg > 2:110639/1‑148 (MQ=255) cATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGAc > 1:1998953/1‑148 (MQ=255) tGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGActgg < 2:1063683/148‑1 (MQ=255) ggTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGActggc < 1:2875129/148‑1 (MQ=255) gTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGa < 2:1510116/148‑1 (MQ=255) gTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGa < 2:1510110/148‑1 (MQ=255) tCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGaa < 1:958661/148‑1 (MQ=255) cTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGAACgc < 2:2040384/148‑1 (MQ=255) gACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGAACgctg > 1:2377442/1‑148 (MQ=255) gACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGAACgctg > 1:2826103/1‑148 (MQ=255) gACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGAACgctg > 1:1338001/1‑148 (MQ=255) gACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGAACgctg > 1:1337429/1‑148 (MQ=255) aCATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGAACgctgc < 1:2706487/148‑1 (MQ=255) aCATTTACTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGAACgctgc > 2:1151991/1‑148 (MQ=255) aCATTTACTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGAACgctgc > 2:1151979/1‑148 (MQ=255) ttAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGAACGCTGCTGAt < 1:2950557/148‑1 (MQ=255) | CGTTACCAGTCGTCGGCTGGAGTATGCTGATTGGCGGTCTGATTCTGTTGCCTTTTTATGCCAGACAAGGAACAAACTTTGTCGTTAACGGCAGTTTGATTCTGGCGT‑TTTTTTATTTGGTGGTCATTGGTACGTCCCTGACATTTAGTCTGTACCTGAAAGGAGCA‑CAATTAATTGGCGGTCCAAAAGCCAGCATTTTGAGCTGTGCAGAACCATTAAGTAGCGCGCTACTCTCTTTGCTGTTGCTGGGGATCACGTTCACATTACCGGACTGGCTGGGAACGCTGCTGATT > CP009273/3832161‑3832453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |