| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,860,159 | C→A | 100% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,860,159 | 0 | C | A | 98.9% | 507.4 / ‑5.7 | 185 | P33P (CCG→CCT) | ibpB | heat shock chaperone |
| Reads supporting (aligned to +/- strand): ref base C (2/0); major base A (58/120); minor base G (3/0); total (65/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.70e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 186 total aligned reads displayed.
TTTCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGCGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGAA > CP009273/3860015‑3860303 | tttCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTTTACGGAggg > 1:1742991/1‑148 (MQ=255)tttCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTGTGAATGTTGTAAGGAggg > 1:3086999/1‑148 (MQ=255) tctcTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTTTAAAAGTTTTAAGGAGGGaa > 1:1204688/1‑148 (MQ=255) ctattcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGacg > 2:179301/4‑146 (MQ=255) tcttctTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGc < 1:1174612/148‑1 (MQ=255) tcttctTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAAAGTTGTACGGAGGGAAGc > 2:3268262/1‑148 (MQ=255) ttcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGTTGTACGGAGGGGAGctc > 2:112675/1‑148 (MQ=255) tcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGTCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGctct > 2:1818003/1‑148 (MQ=255) tcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGctct < 2:2574168/148‑1 (MQ=255) ttttGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTgg < 2:308151/148‑1 (MQ=255) ttttGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTgg > 2:1035537/1‑148 (MQ=255) ttGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCt < 1:515446/148‑1 (MQ=255) tGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCtt < 1:2353889/148‑1 (MQ=255) ggCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCttt < 1:1786243/148‑1 (MQ=255) gctgctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTTTTCGGAGGGAAGCTCTGGCTTTc > 2:261609/1‑148 (MQ=255) gctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTAAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑Acc > 2:536904/1‑148 (MQ=255) ccGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGc < 2:2767622/148‑1 (MQ=255) ccGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGc < 2:1611151/148‑1 (MQ=255) cGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCg < 2:873117/148‑1 (MQ=255) gCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGtt < 2:218040/148‑1 (MQ=255) gCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGtt < 1:763691/148‑1 (MQ=255) gCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGtt < 2:3230902/148‑1 (MQ=255) cGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGttt < 1:1826127/148‑1 (MQ=255) cGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTTTCAAAGTTTTTAGGGGGGCAGCGCTGGGGTTC‑ACCcgcgggt > 1:1169154/1‑145 (MQ=255) tGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTg < 2:1232764/148‑1 (MQ=255) cTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTAAATGTTTTTCGGAGGGAACCTATGGCTGTC‑ACCCGCGTTTTGCaa > 1:3207883/1‑147 (MQ=255) ttttACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGTAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGt < 1:578232/148‑1 (MQ=255) tCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGc < 1:2710064/148‑1 (MQ=255) tCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATAAATTTTTTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGGTTTTGAGttggttggg > 1:2818201/1‑147 (MQ=255) cgcgTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGtt < 2:1868531/148‑1 (MQ=255) cgTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTTTTCGGTGGGAAGCTCTGGGGTTCAACCGCGGTTTTGC‑GTGGGGTGGcccctttt > 1:830183/1‑142 (MQ=255) cgTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTg < 1:2239236/148‑1 (MQ=255) tACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGTTGTAAGGAGGGAAGCTCTGGCTTTC‑ACCGGCGGTTTGCAGTGCGGTGGGCCGTTTGTc > 2:724236/1‑148 (MQ=255) tACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTCTCAAAGTTGTACGGGGGGAAGCTCTGGCTTTG‑ACCGGCGTGTTGGAGGGGGGTGGGCAGgttttg > 1:1532844/1‑145 (MQ=255) cAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCg < 1:2846529/148‑1 (MQ=255) aGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGa < 1:427400/148‑1 (MQ=255) aGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGa < 2:258591/148‑1 (MQ=255) ttGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATc < 1:718252/148‑1 (MQ=255) tGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATcc < 2:386959/148‑1 (MQ=255) aaTCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCAt < 2:1575742/148‑1 (MQ=255) aaTCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCAt < 2:1575870/148‑1 (MQ=255) tCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTGTTGCAGTGCGGTGGCCAGGTTGTCAAAACCGATCCATTGACGCCTCa > 2:3309735/1‑148 (MQ=255) cTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGACGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAg > 2:2439930/1‑148 (MQ=255) ttCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGt < 2:2462842/148‑1 (MQ=255) tCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTCAATGTTGTTCGGAGGGTAGCTCTGGCTTTC‑AACGGCGTTTTTCAGTGCGTTGGGCCGTTTGTGAAAACCCATCCCATGAAGCATCCGTg > 1:2746038/1‑148 (MQ=255) tGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCCATGTTGTACGGAGGGAAGCGCTGGCGTTC‑ACCGGCCGTTTTCAGTGCGGTGGCCAGTTTGTCCAAACCGATCCCATGACGCATCAGTgggg > 2:2013875/1‑148 (MQ=255) gACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGa < 1:724236/148‑1 (MQ=255) aCGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGGCAATGTTGTACGGAGGGGAGCTCTGGCGTTC‑ACCGGCGGGTTGGAGTGCGGTGGCCAGGTTGTGAAAACCGATCCCTTGTAGCCTCAGTGGGGAt > 2:1613083/1‑148 (MQ=255) aCGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGAt < 2:1008398/148‑1 (MQ=255) ggAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATaa < 1:6638/148‑1 (MQ=255) ggAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTAAGGAGGGAAGCTCAGGCGTTC‑ACCGGCGTTTTTCAGTGCGTTGGCCAGTGTGTCAAAACCCATACCAAGTCCCAACAGTGGGGTTaa > 1:3012187/1‑148 (MQ=255) aaaCCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAAt < 1:2020161/148‑1 (MQ=255) cTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGaa < 2:3223449/148‑1 (MQ=255) cTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGaa < 1:2154607/148‑1 (MQ=255) cTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGaa < 1:2465475/148‑1 (MQ=255) cTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGaa < 1:2816127/148‑1 (MQ=255) cTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTAAGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAAACGATCCATTGACGCCTCAGTGGGGATAAATCGaa > 2:2854563/1‑148 (MQ=255) gCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCCATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTTCAGGGCGGTGGCCCGGGTGTCAAAACCCATACCTTGACGCATCAGTGGGGCTCAAtagcagg > 2:3184907/1‑142 (MQ=255) gCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGt < 2:2558221/148‑1 (MQ=255) gCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGt < 1:777547/148‑1 (MQ=255) ccAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGtt < 2:375461/148‑1 (MQ=255) ccAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGtt < 2:1717775/148‑1 (MQ=255) ccAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGtt < 1:2202813/148‑1 (MQ=255) cgcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGc < 1:1817957/148‑1 (MQ=255) cgcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGc < 2:3245444/148‑1 (MQ=255) cgcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGc < 2:990009/148‑1 (MQ=255) cgcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAAAGTTGTACGGAGGGAAGCTCTGGCGTTC‑ACCGGCGTTTTGCAGTTCGTTTGCCAGTTTGTCAAAACCCATGCAATGACGCAACAGTGGGGATAAATAGAAGTTAAGc > 2:1994350/1‑148 (MQ=255) cgcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTGTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGc < 2:932968/148‑1 (MQ=255) gcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCa < 1:2873642/148‑1 (MQ=255) gcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCa < 1:2874222/148‑1 (MQ=255) cAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTCAATGTTGTACGGAGGGAAGCTCTGGCGTTC‑ACCGGCGTTTTGCAGTGCGTTGGGCAGGTTGTCAAAACCGATCCAATGACGCATCAGTGGGGATAAATAGAAGTTACGCaa > 2:1656968/1‑147 (MQ=255) cAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCAt < 2:1639561/148‑1 (MQ=255) cAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCAt < 2:3276752/148‑1 (MQ=255) aaGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATa < 2:512018/148‑1 (MQ=255) tAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATTTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGGCCGTTTGTCAAAAACCATCCAGTTACGCCTCAGTGGGGATAAATCGAAGTTACGCATAgggat > 2:2599465/1‑144 (MQ=255) aTGCGGTAGTGGTTATCGTCGCTTTTCTCAATTTTGTACGGAGGGCAGCTCTGGCTTTC‑ACCCGCGTTTTGCAGTGCGTTGGGCAGTTTGTCAAAAACCATCCATTGACCCATCAGTGGGGAAAAAAAGAAATTAAGCAAAGTCAttt > 2:2428638/1‑148 (MQ=255) aTGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTAAGGAGGGAAGCTCTGGCCTTC‑AACGGCGTTTTGCAGTGCGGTGGCCAGTTTGTCAAAACCCATCCAATGACGCATCAGGGGGGATAAATAGAAGTTAAGCATacgaattt > 2:2428607/1‑141 (MQ=255) gTAGTGGTTATCGTCGCTTTTCTCACTGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCt < 1:2936267/148‑1 (MQ=255) tAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCtt < 2:1328553/148‑1 (MQ=255) aGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTc < 2:1781730/148‑1 (MQ=255) ggTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTaa < 1:282882/148‑1 (MQ=255) aTCGTCGCTTTTCTCAAAGTTGTACGGAGGGAAGCACTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCACTTTGTCAAAAACCAAACATTGACGCCACAGGGGGGATAAATAGAAGTTACGCATAGTCAATTCTACTTCAaagaag > 2:1096524/1‑148 (MQ=255) tcgtcgCTTTTCTCAATGTTTTACGGAGGGAAGCTCAGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGTCCAGTTTGTCAAAAACCATACAATTAAGCATCAGTGGGGATAAATCGAAGTTACGCATAGTAATTTATACTTCTAAAAAGc > 2:796694/1‑148 (MQ=255) cgtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCg < 1:1613083/148‑1 (MQ=255) cgtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCg < 1:1343813/148‑1 (MQ=255) gtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTATGAAGCGa < 1:678670/148‑1 (MQ=255) gtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGa < 1:429877/148‑1 (MQ=255) gtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGa < 1:1064153/148‑1 (MQ=255) gtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGa < 1:2095201/148‑1 (MQ=255) cgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTTCAGTGCGTTGGCCAGTTTGTGAAAAACGATACATTGACGCATCAGGGGGGATAAATAGAAGTTAAGCATAGTCATTTCTCCTTATAAGAATCGagt > 1:2870458/1‑148 (MQ=255) cgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagt < 1:3213510/148‑1 (MQ=255) ttttCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaag < 1:1383853/148‑1 (MQ=255) tttCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaagt < 2:1177434/148‑1 (MQ=255) tttCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaagt < 2:1528737/148‑1 (MQ=255) tttCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaagt < 2:2235587/148‑1 (MQ=255) aTGTTGTACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCa > 2:1892495/1‑148 (MQ=255) gttgtACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCaaa < 2:2746038/148‑1 (MQ=255) tACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCg < 1:3246031/148‑1 (MQ=255) tACGGAGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCg < 1:1608553/148‑1 (MQ=255) cggaggGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGaa < 1:536904/148‑1 (MQ=255) | TTTCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGCGGGAAGCTCTGGCTTTC‑ACCGGCGTTTTGCAGTGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGAA > CP009273/3860015‑3860303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |