| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,914,505 | C→A | 5.5% | V15V (GTG→GTT) | atpE ← | F0 sector of membrane‑bound ATP synthase, subunit c |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,914,505 | 0 | C | A | 5.5% | 695.3 / 11.1 | 183 | V15V (GTG→GTT) | atpE | F0 sector of membrane‑bound ATP synthase, subunit c |
| Reads supporting (aligned to +/- strand): ref base C (68/104); new base A (4/7); total (72/111) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 199 total aligned reads displayed.
GGGATAGCATCCACCAGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAA > CP009273/3914359‑3914652 | gtgATATCATCCACCAGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCTGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCAtcatca < 2:2957224/146‑1 (MQ=255) gATAGCATCCACCAGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATcaca > 1:626855/1‑148 (MQ=255) gATAGCATCCACCAGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATcaca < 2:2031530/148‑1 (MQ=255) aTAGCATCCACCAGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAg < 2:1683920/148‑1 (MQ=255) gCATCCACCAGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCgg < 1:939616/148‑1 (MQ=255) cATCCACCAGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGTCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGc > 1:3135569/1‑148 (MQ=255) ccaccaGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGc > 1:1885821/1‑148 (MQ=255) ccaccaGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGc < 1:3230671/148‑1 (MQ=255) caccaGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGcc > 1:1215048/1‑148 (MQ=255) accaGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCa > 1:1082712/1‑148 (MQ=255) accaGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATAACAGCGGCAGCCa < 1:2646029/148‑1 (MQ=255) ccaGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCAt > 2:1353522/1‑148 (MQ=255) ccaGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCAt > 2:1353912/1‑148 (MQ=255) ccaGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCAt < 1:1509779/148‑1 (MQ=255) aGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGt < 2:1524532/148‑1 (MQ=255) aGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGt > 1:1953552/1‑148 (MQ=255) gACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTa < 1:2248883/148‑1 (MQ=255) gACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTa > 2:2092843/1‑148 (MQ=255) aCCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTAc < 1:163424/148‑1 (MQ=255) ccATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTAcag < 2:2502257/148‑1 (MQ=255) ccATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATAACAGCGGCAGCCATGTAcag > 1:2360263/1‑148 (MQ=255) ccATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATAACAGCGGCAGCCATGTAcag > 1:599228/1‑148 (MQ=255) cATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGTCATGTAcagc < 1:2627967/148‑1 (MQ=255) cATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTAcagc > 2:371332/1‑148 (MQ=255) tAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTAcagcag < 1:3067958/148‑1 (MQ=255) tAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTAcagcag < 1:1424596/148‑1 (MQ=255) aaCGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGa > 2:1552689/1‑148 (MQ=255) aaCGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGa > 1:1504419/1‑148 (MQ=255) aTAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCa > 2:306515/1‑148 (MQ=255) tAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCat < 1:2883206/148‑1 (MQ=255) aaaGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCata > 2:1107573/1‑148 (MQ=255) aaGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCatat < 1:51090/148‑1 (MQ=255) aaGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCatat > 2:1779233/1‑148 (MQ=255) cTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAgg > 1:787113/1‑148 (MQ=255) tGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGt < 1:260021/148‑1 (MQ=255) gAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGtt > 1:3110464/1‑148 (MQ=255) gTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGtttt < 2:1087132/148‑1 (MQ=255) gTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGtttt < 2:1161573/148‑1 (MQ=255) cagcagAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATg < 1:1090308/148‑1 (MQ=255) gcagAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCANCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGAc < 1:1682973/148‑1 (MQ=255) gagGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGt < 1:2517606/148‑1 (MQ=255) agGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGtc < 2:2558480/148‑1 (MQ=255) ggAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATAACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGtct > 1:29731/1‑148 (MQ=255) gAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGtctc > 2:1303998/1‑148 (MQ=255) gAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGtctc < 1:690166/148‑1 (MQ=255) atcagatcagGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCa > 1:1095858/1‑148 (MQ=255) cagatcagGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAgt < 2:3076169/148‑1 (MQ=255) atcagGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAgtttg < 1:2886573/148‑1 (MQ=255) cagGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAgtttgtt > 1:1145932/1‑148 (MQ=255) agGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAgtttgttt < 2:2331071/148‑1 (MQ=255) gggtGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTc < 2:95585/145‑1 (MQ=255) ggTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTc < 2:1442011/148‑1 (MQ=255) gTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCa > 1:1936158/1‑148 (MQ=255) cgcgCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTaa > 1:2351750/1‑148 (MQ=255) cgcgCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTaa < 1:2357362/148‑1 (MQ=255) tGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATAACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACgt < 2:29731/148‑1 (MQ=255) ccTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACgtagta < 1:3300341/148‑1 (MQ=255) ttCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTagtagt > 2:2323116/1‑148 (MQ=255) ttCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTagtagt > 2:2066800/1‑148 (MQ=255) ttCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTagtagt < 1:2377199/148‑1 (MQ=255) aGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTg < 2:1725403/148‑1 (MQ=255) aGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTg < 2:282031/148‑1 (MQ=255) tttACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTaaa > 1:818734/1‑148 (MQ=255) ttACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAAt > 2:197980/1‑148 (MQ=255) cccccGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTaa < 2:2261203/148‑1 (MQ=255) ccccGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAAt > 2:2803872/1‑148 (MQ=255) ccccGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAAt < 1:441602/148‑1 (MQ=255) cccGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATg < 1:1353522/148‑1 (MQ=255) cccGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATg < 1:1353912/148‑1 (MQ=255) cGAGGATGCCGTTCCCGATCGCAGCACAGATTGCCGCCATACACATCATCACAGCGTCAGCCATGTTCATCAGATCAATATTCAGGTTTTCCATGTCAGTCTCCTGTTTTTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGtt < 2:1419076/148‑1 (MQ=255) cGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGtt < 2:352200/148‑1 (MQ=255) gAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGttc < 2:1885821/148‑1 (MQ=255) ggATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGttctt < 1:2554584/148‑1 (MQ=255) ggATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGttctt < 1:1552689/148‑1 (MQ=255) tGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAg < 2:3222185/148‑1 (MQ=255) aTACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGcc > 2:54395/1‑148 (MQ=255) tACCGATCGCAGCACCGATTGCCGCCAGACCCGTCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCa > 1:3211436/1‑148 (MQ=255) gATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGa > 2:1484855/1‑148 (MQ=255) tCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACa > 2:1651233/1‑148 (MQ=255) cGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAg < 1:1303998/148‑1 (MQ=255) cGCAGCACCGAATGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGGAGTAGTGTTGGTAAATTAATGATCTTCAGACGCCATCGACAg > 2:2205469/1‑148 (MQ=255) gcagcaCCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGa < 2:752108/148‑1 (MQ=255) gcagcaCCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGa < 2:3017521/148‑1 (MQ=255) gcaCCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAg < 1:1720601/148‑1 (MQ=255) caCCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGa > 1:723962/1‑148 (MQ=255) cGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGa < 2:2067390/148‑1 (MQ=255) tGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGt < 1:2770535/148‑1 (MQ=255) tGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGt < 1:2772713/148‑1 (MQ=255) tGCCGCCAGACCCATCATAACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGt < 2:2360263/148‑1 (MQ=255) tGCCGCCAGACCCATCATAACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGt < 2:599228/148‑1 (MQ=255) gccgccAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTc > 1:2385725/1‑148 (MQ=255) aGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAAcc < 1:1974247/148‑1 (MQ=255) aGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAAcc > 2:3156001/1‑148 (MQ=255) aGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAAcc < 2:787113/148‑1 (MQ=255) aGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAAcc < 1:307648/148‑1 (MQ=255) aCCCATCATAACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCat < 1:1593960/148‑1 (MQ=255) cccATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCatg > 1:1254458/1‑148 (MQ=255) atcatcACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCatgaag < 2:2271677/148‑1 (MQ=255) tcatcaCAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCatgaaga < 1:2678562/148‑1 (MQ=255) cacaGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATAGACAGATAGACGATCGTCAGAACCatgaagatgaa > 1:711779/1‑148 (MQ=255) | GGGATAGCATCCACCAGACCCATAACGATAAAGAACTGAGTACGCAGCAGAGGAATCAGATCAGGTTGACGCGCTGCGCCTTCCAGGAATTTACCCCCGAGGATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAA > CP009273/3914359‑3914652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |