| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,242,509 | C→T | 87.6% | L26F (CTC→TTC) | ubiC → | chorismate‑‑pyruvate lyase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,242,509 | 0 | C | T | 87.6% | 614.3 / 71.4 | 219 | L26F (CTC→TTC) | ubiC | chorismate‑‑pyruvate lyase |
| Reads supporting (aligned to +/- strand): ref base C (9/18); new base T (80/110); total (89/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
Only 100 of 219 total aligned reads displayed.
TGCTTTACATCTCCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCGTTA > CP009273/4242365‑4242654 | tGCTTTACATCTCCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCg < 1:236434/148‑1 (MQ=255) tttACATCTCCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACt > 1:1532918/1‑148 (MQ=255) ttACATCTCCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTg > 2:2382044/1‑148 (MQ=255) aCATCTCCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGc > 1:1254072/1‑148 (MQ=255) cATCTCCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTCAAGAGATCCCTGCCCTGGATCCGCACCTGTTCGACTGGCt > 2:1752319/1‑148 (MQ=255) cATCTCCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCt > 1:1153539/1‑148 (MQ=255) cttccccGTTAACACCTTTTATG‑GTTACAATTGCATTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTg < 1:820946/144‑1 (MQ=255) aTCTCCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTg < 2:2661260/148‑1 (MQ=255) aTCTCCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTg > 2:776864/1‑148 (MQ=255) aTCTCCCGTAAACA‑CTTTTCTGCGATACAATGCCTTAACGATATGTAACGGATAGTTCGGCATGTCACAACCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTg > 1:835902/1‑148 (MQ=255) tctcCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGt < 1:3194045/148‑1 (MQ=255) tctcCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGt > 1:1950963/1‑148 (MQ=255) tctcCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGt < 1:1358511/148‑1 (MQ=255) cGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTg > 1:2514508/1‑148 (MQ=255) aaCA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGTATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTggagg < 2:2936708/148‑1 (MQ=255) aca‑cTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTggagga > 1:2108416/1‑148 (MQ=255) cTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTc > 2:375318/1‑148 (MQ=255) tttCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCa > 2:2528997/1‑148 (MQ=255) gATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACaaa < 1:722815/148‑1 (MQ=255) gATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACaaa < 1:2381883/148‑1 (MQ=255) gATACAATGCCTTGACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACaaa < 1:2057717/148‑1 (MQ=255) aTACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACaaaa < 1:1576370/148‑1 (MQ=255) aTACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACaaaa < 2:518327/148‑1 (MQ=255) aTACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACaaaa > 1:2249983/1‑148 (MQ=255) tACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAAc > 2:413597/1‑148 (MQ=255) aCAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACg > 1:2324446/1‑148 (MQ=255) aCAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACg > 2:2422083/1‑148 (MQ=255) cAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGt < 1:2341402/148‑1 (MQ=255) aaTGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGtt < 1:527781/148‑1 (MQ=255) gCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTg > 2:2318730/1‑148 (MQ=255) gCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTg > 2:658118/1‑148 (MQ=255) gCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTg > 1:2867771/1‑148 (MQ=255) gTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAAcagcag < 1:3077147/148‑1 (MQ=255) gTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGaaa > 2:1235144/1‑148 (MQ=255) aaCGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGaaaaa < 2:1545745/148‑1 (MQ=255) aCGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAAc > 1:700714/1‑148 (MQ=255) cGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACg > 1:1263082/1‑148 (MQ=255) ggAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACgg < 2:1599261/148‑1 (MQ=255) ggAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACgg < 2:1440152/148‑1 (MQ=255) gagTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTaa > 2:1175289/1‑148 (MQ=255) gagTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTaa > 1:2815035/1‑148 (MQ=255) ttCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCg < 2:1963904/148‑1 (MQ=255) ttCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCg < 1:1207040/148‑1 (MQ=255) cGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTg < 1:1828170/148‑1 (MQ=255) cATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACg < 2:2336270/148‑1 (MQ=255) tGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgat > 2:2681682/1‑148 (MQ=255) tGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgat < 2:3251259/148‑1 (MQ=255) gTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgatg < 2:781452/148‑1 (MQ=255) gTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgatg < 1:2037771/148‑1 (MQ=255) tCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgatga < 2:1783245/148‑1 (MQ=255) cacaCCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgatgat < 1:1850045/148‑1 (MQ=255) cacaCCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgatgat < 1:179941/148‑1 (MQ=255) acacCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATc < 1:200587/148‑1 (MQ=255) ccGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGa < 1:3220200/148‑1 (MQ=255) ccGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGa < 1:3148762/148‑1 (MQ=255) ccGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGa < 1:2571997/148‑1 (MQ=255) ccGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGa > 1:251036/1‑148 (MQ=255) ccGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGa < 2:1075339/148‑1 (MQ=255) ccGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGa < 1:2904856/148‑1 (MQ=255) cgTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAgg > 1:1676235/1‑148 (MQ=255) tAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGtt < 1:697891/148‑1 (MQ=255) tAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGtt > 1:2274320/1‑148 (MQ=255) gtgcgCTGCGCTATGCTAAAGAGATCCCGGCACTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATTAAAAAACGTTTTTAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGaa < 1:2390896/148‑1 (MQ=255) tgcgctgcgcTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAAt > 1:3097043/1‑148 (MQ=255) cgctgcgctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGa > 2:2377495/1‑148 (MQ=255) cgctgcgctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGa > 2:717652/1‑148 (MQ=255) ctgcgctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGaaa < 2:522082/148‑1 (MQ=255) ctgcgctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGaaa < 1:2180074/148‑1 (MQ=255) tgcgctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAAt > 2:2921024/1‑148 (MQ=255) gcgctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATc > 2:1466783/1‑148 (MQ=255) cgctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATcc < 1:1520564/148‑1 (MQ=255) cgctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATcc < 2:2158483/148‑1 (MQ=255) cgctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATcc < 1:1018060/148‑1 (MQ=255) gctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATccc < 2:2016078/148‑1 (MQ=255) gctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATccc < 2:2524221/148‑1 (MQ=255) tATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCg > 1:909826/1‑148 (MQ=255) aTTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCga > 1:2670305/1‑148 (MQ=255) gagaTCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGc > 2:3286921/1‑148 (MQ=255) gagaTCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGc > 2:878817/1‑148 (MQ=255) gagaTCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGc > 1:914910/1‑148 (MQ=255) agaTCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGcc > 2:1678036/1‑148 (MQ=255) gaTCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCg < 1:850464/148‑1 (MQ=255) aTCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCgc > 1:710853/1‑148 (MQ=255) ccctgccctgGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCgctg < 2:2513548/148‑1 (MQ=255) ccctgccctgGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCgctg < 2:3105929/148‑1 (MQ=255) cctgcccttGATCAGAAACTGTTCGAATGTCTGTTGCTTGAGGATTCCATTACAAAACGTTTTGAACAGGAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGATGTGCCgctgc < 2:2537513/148‑1 (MQ=255) ctgccctgGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCgctgct > 2:2729013/1‑148 (MQ=255) ccctgGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGcc > 2:2125354/1‑148 (MQ=255) ccctgGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGcc > 2:460940/1‑148 (MQ=255) tgGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGaa > 1:1693113/1‑148 (MQ=255) ggATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGaaa > 2:55900/1‑148 (MQ=255) aTCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAaga < 2:2514468/148‑1 (MQ=255) ccGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGt < 2:2785679/148‑1 (MQ=255) ccGCAACTGGTCGACTGGCTGTTGCTGGAGGATTCCCTGACAAAACGTTTTGAACAGCCGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCTGATTGAAATCCCCGAAGAAGTGCCGCTGCTGCCGAAAGAGt < 2:1867108/148‑1 (MQ=255) cGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGtc < 2:1908589/148‑1 (MQ=255) cGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGtc > 1:1895079/1‑148 (MQ=255) aaCTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCg < 1:1193712/148‑1 (MQ=255) aCTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCGt < 1:2698078/148‑1 (MQ=255) aCTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCGt < 1:1562878/148‑1 (MQ=255) aCTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCGt < 2:843866/148‑1 (MQ=255) | TGCTTTACATCTCCCGTAAACA‑CTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCGTTA > CP009273/4242365‑4242654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |