Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,432,180 A→T 19.8% intergenic (‑187/‑19) msrA ← / → tamA methionine sulfoxide reductase A/translocation and assembly module for autotransporter export, outer membrane subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,432,1800AT19.8% 416.1 / 104.6 187intergenic (‑187/‑19)msrA/tamAmethionine sulfoxide reductase A/translocation and assembly module for autotransporter export, outer membrane subunit
Reads supporting (aligned to +/- strand):  ref base A (78/72);  new base T (22/15);  total (100/87)
Fisher's exact test for biased strand distribution p-value = 4.65e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.95e-01

Only 100 of 199 total aligned reads displayed.

TGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGTTCGTGCGCAGCTT  >  CP009273/4432033‑4432327
                                                                                                                                                   |                                                                                                                                                   
  tAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAgg                                                                                                                                                   <  1:546649/148‑1 (MQ=255)
   aaCAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGa                                                                                                                                                  <  1:588636/148‑1 (MQ=255)
    aCAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGat                                                                                                                                                 >  1:31690/1‑148 (MQ=255)
      aaGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGatat                                                                                                                                               <  1:374124/148‑1 (MQ=255)
      aaGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGatat                                                                                                                                               <  1:1726236/148‑1 (MQ=255)
       agagGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATAtt                                                                                                                                              <  1:1086033/148‑1 (MQ=255)
        gagGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTc                                                                                                                                             <  2:2709529/148‑1 (MQ=255)
             gTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGgag                                                                                                                                        <  1:264323/148‑1 (MQ=255)
               aTTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGaa                                                                                                                                      >  2:1767713/1‑148 (MQ=255)
               aTTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGaa                                                                                                                                      >  2:1077194/1‑148 (MQ=255)
                tttGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGaaa                                                                                                                                     >  2:2452812/1‑148 (MQ=255)
                tttGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGaaa                                                                                                                                     >  1:1211988/1‑148 (MQ=255)
                 ttGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGaaaa                                                                                                                                    <  2:977901/148‑1 (MQ=255)
                  ttcacacaATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAAt                                                                                                                                   <  2:1993172/146‑1 (MQ=255)
                  tGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAAt                                                                                                                                   >  1:2914507/1‑148 (MQ=255)
                     acacaATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAAtgtg                                                                                                                                <  2:1207576/148‑1 (MQ=255)
                     acacaATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAAtgtg                                                                                                                                <  2:1525386/148‑1 (MQ=255)
                     acacaATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAAtgtg                                                                                                                                <  2:135194/148‑1 (MQ=255)
                        caATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTgcgc                                                                                                                             >  2:211740/1‑148 (MQ=255)
                        caATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTgcgc                                                                                                                             <  2:2082532/148‑1 (MQ=255)
                        caATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTgcgc                                                                                                                             >  1:2201044/1‑148 (MQ=255)
                          aTAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCta                                                                                                                           <  1:2072122/148‑1 (MQ=255)
                          aTAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCta                                                                                                                           >  2:2015834/1‑148 (MQ=255)
                             accaccGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTatat                                                                                                                        <  2:1036154/148‑1 (MQ=255)
                               caccGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATcc                                                                                                                      >  2:621108/1‑148 (MQ=255)
                                 ccGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGa                                                                                                                    >  1:2693903/1‑148 (MQ=255)
                                    tGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAg                                                                                                                 >  1:2574717/1‑148 (MQ=255)
                                    tGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAg                                                                                                                 <  2:267707/148‑1 (MQ=255)
                                      aaTAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGtt                                                                                                               <  1:415858/148‑1 (MQ=255)
                                       aTAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTa                                                                                                              >  1:1124339/1‑148 (MQ=255)
                                         aGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATg                                                                                                            >  1:1805404/1‑148 (MQ=255)
                                          ggTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGc                                                                                                           <  2:955094/148‑1 (MQ=255)
                                           gTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGACAAAAGGATATTCAGGAGAACATGTGCGCTATATCCGACAGTTATGCt                                                                                                          >  1:3151783/1‑148 (MQ=255)
                                            tCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCtg                                                                                                         >  2:1128732/1‑148 (MQ=255)
                                            tCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCtg                                                                                                         >  1:2618377/1‑148 (MQ=255)
                                            tCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCtg                                                                                                         >  2:3252343/1‑148 (MQ=255)
                                             cTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTATGCTTTTTAATCGATATTACTGGATTTTTGTTAATCCGTTAAAAGGCGTTCAAGGGGCAGGAAATAAGGATATTCAGCAGAAAAATTGCGCTATATCCGACAGTTATGCtgg                                                                                                        >  2:311377/1‑147 (MQ=255)
                                              tAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCtgtg                                                                                                       <  2:864193/148‑1 (MQ=255)
                                                   tAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGc                                                                                                  <  2:1257966/148‑1 (MQ=255)
                                                     aaaCATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCtt                                                                                                >  1:2813852/1‑148 (MQ=255)
                                                      aaCATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTa                                                                                               <  2:221415/148‑1 (MQ=255)
                                                       aCATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTAc                                                                                              >  2:150789/1‑148 (MQ=255)
                                                       aCATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTAc                                                                                              >  2:1822879/1‑148 (MQ=255)
                                                              aaaTATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCtt                                                                                       >  1:401756/1‑148 (MQ=255)
                                                               aaTATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTa                                                                                      <  1:3313093/148‑1 (MQ=255)
                                                                    ttGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCgg                                                                                 >  2:434650/1‑148 (MQ=255)
                                                                    ttGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCgg                                                                                 >  2:2442676/1‑148 (MQ=255)
                                                                    ttGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCgg                                                                                 >  2:2458234/1‑148 (MQ=255)
                                                                     tGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGa                                                                                >  2:2297353/1‑148 (MQ=255)
                                                                     tGGGGTTTAGTCTGCTTTTTAATCCATATGACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGa                                                                                <  1:2149781/148‑1 (MQ=255)
                                                                      ggggTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGAt                                                                               <  1:1238257/148‑1 (MQ=255)
                                                                       gggTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATc                                                                              <  1:749069/148‑1 (MQ=255)
                                                                            tAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCg                                                                         >  2:261154/1‑148 (MQ=255)
                                                                               tCTGCTTTTTACTCCATATTACGGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTcg                                                                      <  2:2054819/148‑1 (MQ=255)
                                                                               tCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTcg                                                                      >  2:1934516/1‑148 (MQ=255)
                                                                               tCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTcg                                                                      >  1:3079432/1‑148 (MQ=255)
                                                                               tCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTcg                                                                      >  1:161430/1‑148 (MQ=255)
                                                                                cTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTcgc                                                                     >  2:2146743/1‑148 (MQ=255)
                                                                                   cTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTcgccgc                                                                  >  2:1325248/1‑148 (MQ=255)
                                                                                     ttttAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGa                                                                <  1:301711/148‑1 (MQ=255)
                                                                                     ttttAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGa                                                                <  1:2989032/148‑1 (MQ=255)
                                                                                           tCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgtcc                                                          >  1:686223/1‑148 (MQ=255)
                                                                                            ccATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgtccg                                                         >  1:711676/1‑148 (MQ=255)
                                                                                            ccATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgtccg                                                         >  1:220960/1‑148 (MQ=255)
                                                                                             cATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgtccgt                                                        >  1:2115288/1‑148 (MQ=255)
                                                                                             cATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgtccgt                                                        <  1:2582085/148‑1 (MQ=255)
                                                                                              atatTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgtccgtc                                                       >  1:1003255/1‑148 (MQ=255)
                                                                                              atatTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGATATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgtccgtc                                                       >  2:1806204/1‑148 (MQ=255)
                                                                                               tatTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCt                                                      >  1:800062/1‑148 (MQ=255)
                                                                                               tatTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCt                                                      >  2:332485/1‑148 (MQ=255)
                                                                                                atTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTa                                                     >  1:1310357/1‑148 (MQ=255)
                                                                                                 ttACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTAc                                                    <  1:1767713/148‑1 (MQ=255)
                                                                                                 ttACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTAc                                                    <  1:1197302/148‑1 (MQ=255)
                                                                                                     tGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGt                                                >  2:2972271/1‑148 (MQ=255)
                                                                                                       gATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGTAGAAATTGTGCGATATATACGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCg                                              <  1:3048776/148‑1 (MQ=255)
                                                                                                        aTTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGa                                             >  2:1573441/1‑148 (MQ=255)
                                                                                                          ttttGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAgg                                           >  1:2423829/1‑148 (MQ=255)
                                                                                                            ttGTTAAGCCGTTTAACGGCGTTCCAGTGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACTGGTCGAtggg                                         <  2:1552800/148‑1 (MQ=255)
                                                                                                               ttAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTa                                      <  1:101971/148‑1 (MQ=255)
                                                                                                                tAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTAt                                     >  2:3167022/1‑148 (MQ=255)
                                                                                                                 aaGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATc                                    <  1:1367632/148‑1 (MQ=255)
                                                                                                                  aGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCg                                   >  2:2425418/1‑148 (MQ=255)
                                                                                                                     cGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGa                                <  2:2762350/148‑1 (MQ=255)
                                                                                                                            cGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTgg                         >  2:3001471/1‑148 (MQ=255)
                                                                                                                                 ttCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAg                    <  2:86844/148‑1 (MQ=255)
                                                                                                                                  tCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGa                   >  1:2913569/1‑148 (MQ=255)
                                                                                                                                   ccAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGaa                  <  1:867441/148‑1 (MQ=255)
                                                                                                                                   ccAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGaa                  <  2:2155726/148‑1 (MQ=255)
                                                                                                                                   ccAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGaa                  <  1:224241/148‑1 (MQ=255)
                                                                                                                                     aGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACg                >  1:3289231/1‑148 (MQ=255)
                                                                                                                                     aGGGGCAGGAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACg                >  1:190158/1‑148 (MQ=255)
                                                                                                                                      ggggCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGt               <  2:2474350/148‑1 (MQ=255)
                                                                                                                                       gggCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGtt              >  1:143848/1‑148 (MQ=255)
                                                                                                                                        ggCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGTTc             <  1:2371969/148‑1 (MQ=255)
                                                                                                                                         gCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGTTCg            <  2:2770694/148‑1 (MQ=255)
                                                                                                                                         gCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGTTCg            <  1:1515473/148‑1 (MQ=255)
                                                                                                                                          cAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGTTCGt           <  2:2526952/148‑1 (MQ=255)
                                                                                                                                             gAAAAATGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGTTCGTgcg        >  2:492088/1‑148 (MQ=255)
                                                                                                                                                 aaaGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGTTCGTGCGCAGc    <  2:1110585/148‑1 (MQ=255)
                                                                                                                                                  aaGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGTTCGTGCGCAGCt   <  1:2392922/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
TGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGTTCGTGCGCAGCTT  >  CP009273/4432033‑4432327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: