| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,576,075 | G→T | 10.4% | pseudogene (558/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,576,075 | 0 | G | T | 10.4% | 692.7 / 37.5 | 201 | pseudogene (558/3567 nt) | hsdR | pseudogene, premature stop codon, host restriction; endonuclease R |
| Reads supporting (aligned to +/- strand): ref base G (98/82); new base T (6/15); total (104/97) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.62e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 203 total aligned reads displayed.
CTGTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGAAGTCATAATCTTTAGTGACCAGAC > CP009273/4575928‑4576220 | cTGTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCg > 2:1403195/1‑148 (MQ=255)cTGTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCg > 1:3192545/1‑148 (MQ=255) gTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGAc > 1:2081949/1‑148 (MQ=255) gTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGAc > 1:676085/1‑148 (MQ=255) gTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGAc < 1:1844513/148‑1 (MQ=255) tttGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACtt < 2:3174652/148‑1 (MQ=255) tGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCt > 1:1012852/1‑148 (MQ=255) gCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTg < 1:1696295/148‑1 (MQ=255) cAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGcc < 2:2157618/148‑1 (MQ=255) ttCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGa > 1:2310896/1‑148 (MQ=255) ttCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGa > 2:339896/1‑148 (MQ=255) ttCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGa > 2:2638949/1‑148 (MQ=255) ccGCGTTCTTCTCGGCGAGCTGTGCGTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGt < 1:505072/148‑1 (MQ=255) cgcgTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTc < 1:1190009/148‑1 (MQ=255) cgcgTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTc < 1:1190297/148‑1 (MQ=255) cgTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTg < 2:2310896/148‑1 (MQ=255) cgTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTg > 2:821816/1‑148 (MQ=255) tcttctCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTgcgc > 2:2361028/1‑148 (MQ=255) tcttctCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTgcgc > 1:2741456/1‑148 (MQ=255) tcttctCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTgcgc > 1:581364/1‑148 (MQ=255) ttctCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGTCTGCGCtt < 2:164186/148‑1 (MQ=255) ttctCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCtt < 1:433182/148‑1 (MQ=255) tcGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCttttt < 1:1387289/148‑1 (MQ=255) tcGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCttttt < 2:1066956/148‑1 (MQ=255) ggCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTtct < 2:653716/148‑1 (MQ=255) gAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGTCTGCGCTTTTTCTCGc < 1:531788/148‑1 (MQ=255) aGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCa > 1:350444/1‑148 (MQ=255) gCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCAc > 1:369096/1‑148 (MQ=255) cTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGTCTGCGCTTTTTCTCGCAcc > 1:2622705/1‑148 (MQ=255) cTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCAcc < 1:1218931/148‑1 (MQ=255) gtgCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACctg > 2:467868/1‑148 (MQ=255) tgCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACctgc < 2:1465107/148‑1 (MQ=255) aGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCaa > 2:1589114/1‑148 (MQ=255) gTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAg < 1:1277614/148‑1 (MQ=255) cGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCtgt < 1:3018965/148‑1 (MQ=255) aaGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCtgttgt < 1:1739163/148‑1 (MQ=255) ggCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGttt > 2:2621371/1‑148 (MQ=255) gCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGtttt < 1:2845966/148‑1 (MQ=255) gCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGtttt < 1:406843/148‑1 (MQ=255) cTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTc < 1:2537845/148‑1 (MQ=255) ggTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGc > 2:1740787/1‑148 (MQ=255) tttGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCAc < 1:1064303/148‑1 (MQ=255) gcgcTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTc < 2:147390/148‑1 (MQ=255) gcgcTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTc < 2:2501750/148‑1 (MQ=255) cgcTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTcc < 2:2985620/148‑1 (MQ=255) cgcTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTcc < 2:1545704/148‑1 (MQ=255) cgcTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTcc < 1:293450/148‑1 (MQ=255) gcTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCt < 1:1403195/148‑1 (MQ=255) cTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTg < 1:2258588/148‑1 (MQ=255) cTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTg < 2:789341/148‑1 (MQ=255) ttCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTgg > 2:2852784/1‑148 (MQ=255) ttCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTgg < 2:3274157/148‑1 (MQ=255) tCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGt > 1:543072/1‑148 (MQ=255) cGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTg < 2:1224677/148‑1 (MQ=255) ggTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGa < 2:350444/148‑1 (MQ=255) gTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCa < 2:2356786/114‑1 (MQ=255) gTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCa > 1:2356786/1‑114 (MQ=255) ttCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATag < 1:821816/148‑1 (MQ=255) ccTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATagag > 1:3030467/1‑148 (MQ=255) tgctgTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGt < 1:2056795/148‑1 (MQ=255) tgctgTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGt > 2:1918474/1‑148 (MQ=255) gctgTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGTGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGtt > 2:234954/1‑148 (MQ=255) tgTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGtttt < 2:538227/148‑1 (MQ=255) tttGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTca > 1:916974/1‑148 (MQ=255) tttGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTca > 2:3081807/1‑148 (MQ=255) tttGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTca > 1:2111480/1‑148 (MQ=255) ccTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTcaccac > 1:1913437/1‑148 (MQ=255) ccTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTcaccac > 1:2258530/1‑148 (MQ=255) ccTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTcaccac > 1:1090114/1‑148 (MQ=255) ccAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTc < 2:512800/148‑1 (MQ=255) cAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTcc > 2:1260463/1‑148 (MQ=255) gAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCgg > 2:2035500/1‑148 (MQ=255) gAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCgg < 1:1773645/148‑1 (MQ=255) aaTGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGc < 2:1564184/148‑1 (MQ=255) aTGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCa > 1:1296808/1‑148 (MQ=255) gCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAaca < 2:1077056/148‑1 (MQ=255) atatAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTTATAGAGGTTTTCACCACGTTCCGGCAACACaa < 2:1025206/148‑1 (MQ=255) tataGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACaaa > 2:751588/1‑148 (MQ=255) tataGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACaaa > 1:62957/1‑148 (MQ=255) taGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAaca < 1:810198/148‑1 (MQ=255) aGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAacac > 1:1460453/1‑148 (MQ=255) gCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAAcacc > 2:441884/1‑148 (MQ=255) ccGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAAcaccg > 2:2668671/1‑148 (MQ=255) ccGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAAcaccg > 2:2786689/1‑148 (MQ=255) cGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAAcaccgg > 1:2361269/1‑148 (MQ=255) ttCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAAcaccggca < 2:2111480/148‑1 (MQ=255) ttCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAAcaccggca > 1:840755/1‑148 (MQ=255) tCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAAcaccggcac > 1:2076722/1‑148 (MQ=255) ggCAACCAGCTTCTGCTGTTGCGCTTCTACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCggg < 1:3095308/148‑1 (MQ=255) cAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGaa < 1:2361028/148‑1 (MQ=255) aCCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGACGt > 1:521567/1‑148 (MQ=255) ccAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGAAGTc < 2:2840421/148‑1 (MQ=255) ccAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGAAGTc > 2:2768778/1‑148 (MQ=255) aGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGAAGTCAt > 2:1039074/1‑148 (MQ=255) cTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGAAGTCATaa > 1:1056255/1‑148 (MQ=255) cTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGAAGTCATaa > 1:2856203/1‑148 (MQ=255) ttCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGAAGTCATAAt < 2:417502/148‑1 (MQ=255) tCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGAAGTCATAATc > 2:3191325/1‑148 (MQ=255) gctgTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGAAGTCATAATCttt > 2:1392381/1‑148 (MQ=255) tCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGAAGTCATAATCTTTAGTGACCAGAc > 1:458987/1‑148 (MQ=255) | CTGTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAATGGCGATATAGCCGTTCAGGGCAACCAGCTTCTGCTGTTGCGCTTCGACTTCTGCCTGAGTCTGCGCTTTTTCTCGCACCTGCTGTTCAAGCTGTTGTTTTAGCGTCAGCACTTCCTGGTGATAGAGGTTTTCACCACGTTCCGGCAACACAAACACCGGCACCGGGAAGTCATAATCTTTAGTGACCAGAC > CP009273/4575928‑4576220 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |