| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 576,183 | G→T | 13.7% | intergenic (‑282/‑107) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 576,183 | 0 | G | T | 13.7% | 353.8 / 6.9 | 131 | intergenic (‑282/‑107) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| Reads supporting (aligned to +/- strand): ref base G (69/38); new base T (2/22); total (71/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.79e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 132 total aligned reads displayed.
TTGTGACATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCG > CP009273/576036‑576326 | ttGTGACATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATg > 2:1623165/1‑148 (MQ=255) tgtgACATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGt < 2:1533685/148‑1 (MQ=255) cATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGtattta < 2:384399/148‑1 (MQ=255) aTGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGtatttat < 1:2348011/148‑1 (MQ=255) aTGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGtatttat < 2:1340613/148‑1 (MQ=255) tGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGtatttatt < 2:1269752/148‑1 (MQ=255) tGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGtatttatt < 1:2046848/148‑1 (MQ=255) tGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGtatttatt < 2:1269681/148‑1 (MQ=255) gTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTatttattt > 1:1624559/1‑148 (MQ=255) gatgatAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTaaa > 1:795434/1‑148 (MQ=255) gatgatAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTaaa > 1:2719190/1‑148 (MQ=255) atgatAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTaaaa < 1:3106658/148‑1 (MQ=255) atgatAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTaaaa < 2:2014965/148‑1 (MQ=255) tgatAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAAt > 1:546344/1‑148 (MQ=255) tgatAATTATTATCATTTTGTGGGTCCTTTCCCGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATTAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAAt > 1:2252629/1‑148 (MQ=255) tgatAATTATGATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCCTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAAt < 2:1673130/148‑1 (MQ=255) gatAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATa > 1:84756/1‑148 (MQ=255) atAATTATTCTCATTTGGTGGGTCCTTTCCGGCGAGCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATAc < 2:2496348/148‑1 (MQ=255) atAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTCTTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATAc > 2:868174/1‑148 (MQ=255) tAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGTCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATaaa > 1:1050894/1‑146 (MQ=255) aaTTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATaaca > 2:1787468/1‑145 (MQ=255) cttattcTCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATAcccc < 1:1831863/147‑1 (MQ=255) ttattaTCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATAccccc > 1:139661/1‑148 (MQ=255) ttattaTCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATAccccc > 1:650824/1‑148 (MQ=255) ttattaTCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTATTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATAccccc > 1:651215/1‑148 (MQ=255) tattatCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTATGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCt > 2:2166427/1‑148 (MQ=255) tatCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGaa > 2:2880997/1‑148 (MQ=255) tCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGaaaa > 1:195530/1‑148 (MQ=255) aTTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAaaaga < 2:1670708/148‑1 (MQ=255) ttttGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAaaagaa > 2:2815278/1‑148 (MQ=255) tgtgGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAgg < 2:2358141/148‑1 (MQ=255) tgGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGaa < 2:2441012/148‑1 (MQ=40) gggTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGaaa > 2:1589259/1‑148 (MQ=39) ggTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAAc > 1:1152962/1‑148 (MQ=39) ccTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGAc > 2:3108466/1‑148 (MQ=39) ccTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGAc > 2:41393/1‑148 (MQ=39) ccTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTGATTTAAAATACCCCCTGAAAAGAAAGGAAACGAc > 2:2169273/1‑148 (MQ=255) tttCCGGCGATCCGTCTGGTTACGGGGGGGCGACCTCGCGGTTTTTCGATATTTTTTAAAATTTTCCGTTTTATGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATTTTTTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAg < 2:2747333/148‑1 (MQ=11) tttCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAg > 2:1739388/1‑148 (MQ=39) cGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGa > 2:1014039/1‑148 (MQ=38) taTCCTACTGGTTAGGGGGCGGCGACCTCGGGGTTTTTGGATTTTTTTTAAATTTTTCCGGTTTAAGGTGTTTCGT‑TTATTCTTCGTCTTAAA‑TTATTTTTTTTATTAAAAATACCCCCTCAAAACAAAGCACACGACAGGTGCTGaa < 2:1263042/147‑1 (MQ=255) aCAGGTTACGGGGCGGCGACCTCGCGGGTTTTGGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATTTATTTATTTAAAATAACCCCAGAAAATAAATGAAAAGACAGGTGCTGTAAGCGAg > 1:292158/1‑148 (MQ=14) aCAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACCGGTGCTGAAAGCGAg > 1:479522/1‑148 (MQ=255) cAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGc > 2:628318/1‑148 (MQ=39) ttACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATTAAAATTTTCCGTTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAA‑TTAATGTATTTATTTAAAATACCCCCTCAAAACAAAGCAAACGACAGGTGCTGAAAGCGAGCtttt < 2:1823884/148‑1 (MQ=14) ggggggCGACCTCGGGGTTTTTCTATTTTTATTAAAATTTTCGGGTTTACGGTTTTTCGG‑TTCTGCTTCGTCGTAAC‑TTATTTTATTTTTTTAAAATACCCCCTGAAAAAAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGcc < 2:1229523/148‑1 (MQ=14) gggCGGCGACCTGGGGGTTTTTCGATATTTATTAAATTTTGCCGGTTTATGGTGTTTCCG‑TTATTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAATGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGcc < 2:3312856/148‑1 (MQ=14) ggggcgACCGCGGGGTTTTTCGATTTTTATAAAATTTTTCGGTTTTATGTTTTTTCCT‑TTCTTCTTCGTCTTAAC‑TTAATTTATTTATTTAAAATACCCCCTCAAAAGAAAGCACACGACAGGTGCTGAAAGCGAGCTTTTTGGCctc < 2:692426/146‑1 (MQ=255) gggctACCGCGGGGGTTTTCGATTTTTATTAAAATTTCCGGGTTGATGTGGTTTCGT‑TTCTTCTTCGTCTAAAC‑TTAATGTATTTCTTAAAAAACCCCCCTAAAAACAAACCACACGACAGGTGCTGAAAGCGAGCTTTTTGGCctct < 2:1448760/147‑1 (MQ=255) cggcgACCTGGGGGGTTTTGGATATTTATTAAATTTTTCGGTTTTAGGGTGTTGCCT‑TTCTGTTTGGTGTTAAA‑TTATTTTTTTTATTAAAAAAACCCCCTAAAAACAACGCACACGACAGGTGCTGAAAGCGAGCTTTTTGGCctct < 2:1449101/148‑1 (MQ=255) cccTCGGGGTTTTTCGCTTTTTTTCAAATTTTTCCGTTTTATGGTGTTGCCT‑TTCTTCTTCGTCTTAAC‑TAAATTTATTTTTTAAAAATCCCCCCTCAAAAAAAAGCAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGt < 1:2757524/147‑1 (MQ=255) tCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTc > 1:2474618/1‑148 (MQ=255) ttttCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTtctc > 1:1065250/1‑148 (MQ=255) tttCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTctct > 2:2084507/1‑148 (MQ=255) ttATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGtttttttg > 1:2333620/1‑145 (MQ=255) ttATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTACTTTCTCTGTTTTTGtg > 1:1802373/1‑147 (MQ=255) tGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGt > 2:2158700/1‑148 (MQ=255) aatttttCGGTTTTATGTTTTTTCTG‑TTTTTCTTCTTCTTAAA‑TTATTTTATTTATTAAAAAACCCCCATCAAAATAATGCAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGa < 1:3033339/145‑1 (MQ=9) aatttttCGGGTTTATGGTGTTTCCG‑TTCTTGTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGa < 2:3247187/145‑1 (MQ=255) aatttttCCGTTTTTTGGTTTTTCTG‑TTATTCTACTTCTTAAT‑TTTTTTTATTTATTTAAAAAACCCCCTAAAAATAAAGCAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGa < 1:3033622/145‑1 (MQ=14) aaaTTTTCCGTTTTATGTTTTTTGCT‑TTTTTATTCTTATTAAT‑TTATTTTATTTATTAAAAATACCCCATCAAAATAAAGTAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGa < 2:1050894/148‑1 (MQ=9) aaTTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGaa > 1:1644118/1‑148 (MQ=255) ttttCTGGTTTATTTTGTTTCGG‑TTTTTGTTCGTCTTAAT‑TTATTTTATTTATTAAAAAAACCCCCTCAAAACAACCCACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAAtg < 1:1014039/148‑1 (MQ=9) ttttCGGGTTTTAGGTGTTTCCG‑TTTTTCTTCGTCTTAAA‑TTATTTTTTTTATTTAAAATACCCCCTGAAAATAACGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAAtg < 2:3126363/148‑1 (MQ=14) tttgcgggTTTACGTTGTTTCGT‑TTCTTCTGCGTCGTAAC‑TAAATGTATTTTTTAAAAAGACCCCCTCAAAATACAGTACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAAtg < 2:2033101/142‑1 (MQ=14) ggattAAGGTGTTACCG‑TACTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGACAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAAt < 2:540261/145‑1 (MQ=255) ggTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTCAAAATAACGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAAt < 2:139661/148‑1 (MQ=255) ttttggTGTGTCGG‑TTCATATGCGTCTAAAA‑TTATTTTTTTTAATAAAAAAACCCCCTCAAAAAAACGCACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGa < 1:362169/144‑1 (MQ=9) ttAAGGTGTTTCCG‑TTCTTCTTCGTCTTAAC‑TTAATTTATTAATTTAAAATACCCCCTGAAAAGAACGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGa < 2:78029/148‑1 (MQ=255) tgtTTCCT‑TTCTTCGTCGTCAAAAA‑TTATTGTATTTATTAAAACACCCCCCAAAAAACAACCCACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTcaa < 1:738271/148‑1 (MQ=14) tgtTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTGCGTTGTCTGTTTTTGTGCGTGGTATGGGGCATGGGAGTgaa > 1:3107660/1‑148 (MQ=14) gtgttCCGTTTCTTCTCGGCCGTACA‑TTACTTTTTTTATTAAAAAAACCCCTTTAAAATAAAGTAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTca < 1:3261563/145‑1 (MQ=14) tttCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTTTCCGTGGGATGTGCAATGGAAGTcaaca > 1:2123790/1‑148 (MQ=255) ttCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTGCATTATCTGGTTTTTTGGGGGGTAGGTGCACTGGAAGTccacaa > 1:2224398/1‑148 (MQ=14) ccG‑TTCTTCTTCTTCGTAAC‑TTAATTTATTTATTAAAAATCCCCCCTGAAAATAAAGCAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACaaaa < 2:2252629/148‑1 (MQ=14) ccG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAACGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACaaaa < 2:2719190/148‑1 (MQ=255) cctttcttctacGTCTTAAA‑TTATTGTATTTATTTAAAATACCCCCTCAAAATAACGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACaaaa < 2:795434/145‑1 (MQ=14) ccttagttcttcGTCTAAAA‑TTATTGTATTAATTAAAAATACCCCCTGAAAAAAAAGCACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACaaaa < 2:2251633/142‑1 (MQ=14) tttcttgtgcGTCGTAAA‑TTATTTTATTTAATAAAAAACCCCCCTTAAAAGAAAGGACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAag < 2:2252137/147‑1 (MQ=14) ttcttcttcGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTGTCCTTTCTCTGTTTTTGTGCGTGGGATGTGCCATGGAAGTCAACAAAAagc > 1:1539519/1‑148 (MQ=255) tcttcttcGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAagca > 2:706948/1‑148 (MQ=255) cttcttcGTC‑TAACATAAATTTATTTTTTAAAAACACCCCCTCAAAACAAAGCACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAagcag < 1:1623165/148‑1 (MQ=14) ttcttcGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAagcagc < 2:546344/148‑1 (MQ=255) tcttcGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgct > 2:1289951/1‑148 (MQ=255) tcgtcgTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTTTGCGTGGAATGTGCAATGGAAGTCAAAAAAAAGCAgctggc > 1:1040529/1‑148 (MQ=255) tcgtAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTGTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAACCAGCTGGCGGa > 1:2131613/1‑148 (MQ=255) cgtAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTGCGTTATCTGTTTTTGTGGGGGGGATGTGCAATTGAAGTCAAAAAAAAGAAgcggggtgtc > 1:850903/1‑146 (MQ=14) cgtAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGAc > 2:1263581/1‑148 (MQ=255) tAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTGCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAt > 2:5149/1‑148 (MQ=255) tAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCGTTCTCTGTTTTTGTCCGTGGAATGTGCAAAGGAAGTCAACAAAAAGCAGCTGGCAGACAt > 2:4885/1‑148 (MQ=255) aaC‑TTTATGTATTTATTTAAATTACCCCCTGAAAAGAATGGACACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAtt < 2:2626993/148‑1 (MQ=255) aaC‑TTAATTTATTTATTTAAAATACCCCCGTAAAACAAAGCAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAtt < 2:3202463/148‑1 (MQ=14) aaC‑TTAATTTATTTATTTAAAAACCCCCCTGAAAATAAACTAAACGACAGGTGCTGAAAGCGAGCTTTTTGTCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAtt < 2:1536772/148‑1 (MQ=14) aaC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCCACAAAAAGCCgctggctgtcctt > 1:2858801/1‑143 (MQ=255) aC‑TTATTGTATTTATTTAAAATACCCCCTTAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAttt < 2:1098027/148‑1 (MQ=255) aC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAttt > 2:2402041/1‑148 (MQ=255) aC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAttt > 2:2623965/1‑148 (MQ=255) aC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTGTGCTTTCTCTGTTTTTGTGCGTGGTATGTGGAATGGTAGTGAACAAAAAGCAGCTGGGTGACAttt > 1:1985674/1‑148 (MQ=14) aC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTGTGCTGTATCTGTTTTTGTGCGTGGACTGTGCAATGGAAGTCAACAAAAAGCAGCAGGCTGACAatt > 1:1985562/1‑148 (MQ=14) c‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAtttt > 2:2591975/1‑148 (MQ=255) | TTGTGACATGTAGATGATAATTATTATCATTTTGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCG‑TTCTTCTTCGTCGTAAC‑TTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCG > CP009273/576036‑576326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |