Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 955,673 T→C 5.5% intergenic (+122/‑47) aroA → / → ycaL 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273955,6730TC 5.5% 447.0 / 13.6 148intergenic (+122/‑47)aroA/ycaL5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone
Reads supporting (aligned to +/- strand):  ref base T (39/99);  new base C (2/6);  total (43/105)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01

Only 100 of 165 total aligned reads displayed.

TGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTATCAGCTC  >  CP009273/955526‑955820
                                                                                                                                                    |                                                                                                                                                   
  gcgcGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttg                                                                                                                                                   <  2:916864/148‑1 (MQ=255)
  gcgcGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttg                                                                                                                                                   <  2:1750569/148‑1 (MQ=255)
   cgcgGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt                                                                                                                                                  <  2:1069860/148‑1 (MQ=255)
   cgcgGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt                                                                                                                                                  <  1:281720/148‑1 (MQ=255)
   cgcgGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt                                                                                                                                                  <  1:281697/148‑1 (MQ=255)
    gcgGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgtt                                                                                                                                                 <  1:221566/148‑1 (MQ=255)
     cgGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGttgttg                                                                                                                                                <  2:223601/148‑1 (MQ=255)
      ggATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGa                                                                                                                                               <  2:1620617/148‑1 (MQ=255)
      ggATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGCTGTTGa                                                                                                                                               <  1:1013006/148‑1 (MQ=255)
      ggATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGCTGTTGa                                                                                                                                               <  1:1012719/148‑1 (MQ=255)
       gATTAGTCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGAt                                                                                                                                              <  2:1021711/148‑1 (MQ=255)
       gATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGAt                                                                                                                                              <  1:126565/148‑1 (MQ=255)
       gATTAGCCAGGCAGCCTGAATGAACAACGGGAAATTAATAGACAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGAt                                                                                                                                              <  1:1800093/148‑1 (MQ=255)
         ttAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATAc                                                                                                                                            <  1:2726551/148‑1 (MQ=255)
              cAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACataat                                                                                                                                       <  2:630287/148‑1 (MQ=255)
               aGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACataata                                                                                                                                      <  1:77112/148‑1 (MQ=255)
                ggCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAatat                                                                                                                                     <  1:293059/148‑1 (MQ=255)
                  cAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATAttt                                                                                                                                   <  2:2841743/148‑1 (MQ=255)
                    gCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtat                                                                                                                                 <  2:2438672/148‑1 (MQ=255)
                    gCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtat                                                                                                                                 <  2:1930120/148‑1 (MQ=255)
                       tgaatgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtatata                                                                                                                              <  2:1562749/148‑1 (MQ=255)
                       tgaatgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtatata                                                                                                                              <  2:1562763/148‑1 (MQ=255)
                       tgaatgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtatata                                                                                                                              <  1:1464842/148‑1 (MQ=255)
                          atgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTTTGTGTCATTTTGTTTAATTGTAGCGGCGCTTGTCAATGTAAGTTTTTGTTAAAAAAAATTTatatatta                                                                                                                           >  2:448085/1‑146 (MQ=255)
                          atgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGa                                                                                                                           <  1:1660367/148‑1 (MQ=255)
                          atgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCGTGTGAGTCATTTTGATTAATGGTAGCGTCGCGTGTCAATGTAAGTTGTTGATACATAATATTTATATATGa                                                                                                                           >  2:407032/1‑148 (MQ=255)
                           tgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAt                                                                                                                          <  2:1705155/148‑1 (MQ=255)
                             aacaacGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTa                                                                                                                        <  1:3240232/148‑1 (MQ=255)
                               caacGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCGTGTCAATGTAAGTTTTTGTTACATAATATTTTTATATTATTAAta                                                                                                                     >  2:411459/1‑147 (MQ=255)
                               caacGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTGAATGTAAGTTGTTGATAAAAAATATTTATATATGATTAAt                                                                                                                      >  2:1359501/1‑148 (MQ=255)
                                 acGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCa                                                                                                                    <  1:500824/148‑1 (MQ=255)
                                 acGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCa                                                                                                                    <  1:1194828/148‑1 (MQ=255)
                                 acGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTATCGTCGCTTGTCAATGTTAGCTGTTGTTACATAATATTTATATATTTTTAAtaa                                                                                                                    >  2:1800558/1‑146 (MQ=255)
                                  cGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCaa                                                                                                                   <  2:314069/148‑1 (MQ=255)
                                  cGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGCTGTTGATACATAATATTTATATATGATTAATCaa                                                                                                                   <  2:1290364/148‑1 (MQ=255)
                                    ggCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCCATGTAAGTTGTTGTTACATAATATTTATATATTATTAATAAACg                                                                                                                 >  2:778754/1‑148 (MQ=255)
                                    ggCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACg                                                                                                                 <  2:1639889/148‑1 (MQ=255)
                                        attaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGgatg                                                                                                             <  1:2040633/145‑1 (MQ=255)
                                         ttaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGgatga                                                                                                            <  2:2217812/146‑1 (MQ=255)
                                            ataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTAGGTCCTTGTGATTCAATTTTTTTAATTGTATCGTCGCGTGTGAAAGTAAGTTGTTTTTTAAAAAAATTTTTATTTTATTAATAAAAGGattatta                                                                                                         >  1:1361754/1‑147 (MQ=255)
                                            ataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTAGGACCTTGTGAGTCATTTTTTTTAATGGTAGCGTCGCGTGTGAATTTAATTTTTTTATAAAAAAAATTTATATATTATTAATAAAAGGGTGttta                                                                                                         >  1:1361275/1‑147 (MQ=255)
                                              aGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCGTTTGTGTGATTTTGATTAATGGTTGCGTGGCGTGTCAATGTAAGTTGTTTTTAAATAATATTTATATATTTTTTATAAACGGATGTTTgac                                                                                                       >  2:2821489/1‑148 (MQ=255)
                                                  aaaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATga                                                                                                   <  1:2671560/148‑1 (MQ=255)
                                                    aTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATgaag                                                                                                 <  2:2060486/148‑1 (MQ=255)
                                                    aTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATgaag                                                                                                 <  2:2057886/148‑1 (MQ=255)
                                                     tctttcttTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGTTTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGTTACATAATATTTATATATGATTAATAAAAGGATTTTTAACATgaaga                                                                                                >  2:1625428/1‑148 (MQ=255)
                                                     tctttcttTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGGCGCGTGTCAATGTTAGTTTTTGATACATAAAATTTATATATTATTAATCAACGGATGATTAACATgaaga                                                                                                >  2:1883870/1‑148 (MQ=255)
                                                      ctttctttATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATgaagaa                                                                                               <  1:2317828/148‑1 (MQ=255)
                                                      ctttctttATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATgaagaa                                                                                               <  1:655974/148‑1 (MQ=255)
                                                        ttctttATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGGCCATGTGTGTGATTTTGATTAATGGTAGCGTCGCGTGTGCAATTAAGTTTTTTTTAAAAAATATTTATATATTTTTTATAAACCGCTGATTAACATGTAGAATa                                                                                             >  2:1688862/1‑148 (MQ=255)
                                                        ttctttATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATa                                                                                             <  1:504150/148‑1 (MQ=255)
                                                        ttctttAGCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATa                                                                                             <  2:2592667/148‑1 (MQ=255)
                                                            ttATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTaa                                                                                         <  2:3238038/148‑1 (MQ=255)
                                                            ttATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTaa                                                                                         <  1:480436/148‑1 (MQ=255)
                                                                cAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTa                                                                                     <  1:440128/148‑1 (MQ=255)
                                                                   aaCGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTActg                                                                                  <  2:3279551/148‑1 (MQ=255)
                                                                        cGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCGTGTCAATGTAAGTTTTTGATACATAAAATTTATATATGATTAATCAAACGATGATTCACATGACGAAAACTAAAATACAGCTGGc                                                                             >  2:1303708/1‑148 (MQ=255)
                                                                          gCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGa                                                                           <  2:2297566/148‑1 (MQ=255)
                                                                             caTTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTg                                                                        <  2:1461842/148‑1 (MQ=255)
                                                                                   cGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACct                                                                  <  1:570190/148‑1 (MQ=255)
                                                                                      cGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGGAAGTTTTTGATACATAATATTTATATATGAATAATAAAAGGATTATTAACATGAAGAATAATAAAATACATCTGGCGATTTCGAACTCTg                                                               >  2:3181463/1‑148 (MQ=255)
                                                                                           tttttCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTgcagca                                                          <  1:2013452/148‑1 (MQ=255)
                                                                                            ttttCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGTTTCACATGAAGAATACGAAATTACTGATGGCGATTGCGACCTCTTCAGCAt                                                         >  2:1587105/1‑148 (MQ=255)
                                                                                            ttttCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCAt                                                         <  2:24382/148‑1 (MQ=255)
                                                                                                 ggACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTg                                                    <  2:1991395/148‑1 (MQ=255)
                                                                                                      ttGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAgg                                               <  2:2578894/148‑1 (MQ=255)
                                                                                                       tgtgAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAggg                                              <  1:2512113/148‑1 (MQ=255)
                                                                                                         tgAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAATAATAAACGGATGATTCACATGAAGAATACTAAATTAATGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGgtg                                            >  1:2132758/1‑148 (MQ=255)
                                                                                                          tagtatttttGTTTAATGTTAGCGTCGATTGTCAATGTAAGTTGTTGATTCATAATATTTATATATTATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTTCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGgtgt                                           <  1:2163423/142‑1 (MQ=255)
                                                                                                          gAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATTTAAGTTGTTTATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTAATGCTGGCGATTTCGACCTCAGCAGCATTACTGACAGGgtgt                                           >  1:1791675/1‑148 (MQ=255)
                                                                                                          gAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGgtgt                                           <  1:499827/148‑1 (MQ=255)
                                                                                                           aGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTTTTTATAAATAATATTTATATATTATTAATAAAACGATGATTAAAAATAAGAAAAATAAAATAAAGCTGGCGATTTCGACCACAGCACCAATAAATAAAGGgtgta                                          >  1:683463/1‑147 (MQ=255)
                                                                                                                  ttGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATAc                                   <  1:2805569/148‑1 (MQ=255)
                                                                                                                    gATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATAccc                                 <  2:2692918/148‑1 (MQ=255)
                                                                                                                     aTTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCa                                >  2:1096345/1‑148 (MQ=255)
                                                                                                                       tAATGGTAGCGTCGCTTGTCAATGTAAGCTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACg                              <  2:1347480/148‑1 (MQ=255)
                                                                                                                         aTGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGt                            <  2:3278459/148‑1 (MQ=255)
                                                                                                                         aTGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATAAATAATATTTATATATTATTAATAAACGGATTATTAACATGAAGAATACTAAATTACTTCTTGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATAACCACGGt                            >  2:1977527/1‑148 (MQ=255)
                                                                                                                           ggTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAACTTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTAt                          <  2:2611368/148‑1 (MQ=255)
                                                                                                                             tAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAATAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTg                        <  1:1394914/148‑1 (MQ=255)
                                                                                                                             tAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTg                        <  2:2744015/148‑1 (MQ=255)
                                                                                                                             tAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTg                        <  1:1359501/148‑1 (MQ=255)
                                                                                                                             tAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTg                        <  1:1333322/148‑1 (MQ=255)
                                                                                                                              aGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGa                       <  2:1926946/148‑1 (MQ=255)
                                                                                                                                   cGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCa                  >  2:306533/1‑148 (MQ=255)
                                                                                                                                     cTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAat                <  1:1466737/148‑1 (MQ=255)
                                                                                                                                      ttGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAata               <  2:3266968/148‑1 (MQ=255)
                                                                                                                                         tCAATTTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGATGAATACTAAATTACTGCTGGCGATTTCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGTTACCAATATgg            <  1:1688374/148‑1 (MQ=255)
                                                                                                                                           cAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGc           >  1:1799249/1‑148 (MQ=255)
                                                                                                                                              tGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTAt        <  2:2079170/148‑1 (MQ=255)
                                                                                                                                              tGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTAt        <  1:3136561/148‑1 (MQ=255)
                                                                                                                                              tGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTAt        <  1:3133622/148‑1 (MQ=255)
                                                                                                                                              tGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTAt        <  1:1573507/148‑1 (MQ=255)
                                                                                                                                                 aaGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCATGGTATTGATACCAATATGGCTATCAg     <  1:411459/148‑1 (MQ=255)
                                                                                                                                                 aaGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTATCAg     >  2:2018561/1‑148 (MQ=255)
                                                                                                                                                  aGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTATCAGc    >  2:2025271/1‑148 (MQ=255)
                                                                                                                                                   gttgttGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTATCAGCt   <  2:1130342/148‑1 (MQ=255)
                                                                                                                                                    ttgttgATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTATCAGCTc  >  1:2001747/1‑148 (MQ=255)
                                                                                                                                                    ttgttgATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTATCAGCTc  <  1:778754/148‑1 (MQ=255)
                                                                                                                                                    ttgttgATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTATCAGCTc  >  2:2786789/1‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTGGCGATTGCGACCTCTGCAGCATTACTGACAGGGTGTCAAAATACCCACGGTATTGATACCAATATGGCTATCAGCTC  >  CP009273/955526‑955820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: