| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 994,840 | T→G | 19.1% | F57V (TTC→GTC) | elfC → | putative outer membrane fimbrial subunit export usher protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 994,840 | 0 | T | G | 19.1% | 340.3 / 87.0 | 189 | F57V (TTC→GTC) | elfC | putative outer membrane fimbrial subunit export usher protein |
| Reads supporting (aligned to +/- strand): ref base T (67/85); new base G (20/17); total (87/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 198 total aligned reads displayed.
CACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATG > CP009273/994693‑994987 | cacaGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAATGATGATCCCTCAATGGTGGCCGATTTGTCTCGtt < 1:1103212/148‑1 (MQ=255)cacaGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGtt > 1:3252044/1‑148 (MQ=255) acaGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGttt < 1:1021882/148‑1 (MQ=255) acaGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGttt < 1:2731054/148‑1 (MQ=255) caGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTc > 1:2270886/1‑148 (MQ=255) ccTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGaa > 1:713124/1‑148 (MQ=255) tGTTAAGCTCTGGTGGAGTGCCATCGTTTTTTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGTTCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGaaaa < 1:1397812/148‑1 (MQ=255) gTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGaaaaa > 1:3046257/1‑148 (MQ=255) tAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAgg < 2:2120485/148‑1 (MQ=255) tAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAgg < 1:519682/148‑1 (MQ=255) tAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAgg > 2:213385/1‑148 (MQ=255) tAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAgg > 1:1968611/1‑148 (MQ=255) tAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAgg < 1:211331/148‑1 (MQ=255) tAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAgg > 2:791516/1‑148 (MQ=255) tAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAgg > 2:3177382/1‑148 (MQ=255) aGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGAc > 1:963479/1‑148 (MQ=255) gCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGACa > 1:3124033/1‑148 (MQ=255) gCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGACa > 1:3123809/1‑148 (MQ=255) ctctGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACaa < 1:81423/148‑1 (MQ=255) ctGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGAGaaaa < 2:573249/148‑1 (MQ=255) ggtggAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGTCGATTTGTCTCGTTTCGAAAAAGGACaaaaaa < 2:2256662/148‑1 (MQ=255) ggtggAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACaaaaaa > 1:127358/1‑148 (MQ=255) tggAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATa < 1:1013306/148‑1 (MQ=255) tggAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGACAAAAAATa < 1:782181/148‑1 (MQ=255) tgAGTGACATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGATGATACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCTATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACATAAAATaa < 2:1612337/147‑1 (MQ=255) aGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGACAAAAAATAACg < 2:2099548/148‑1 (MQ=255) cGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGt > 1:2668756/1‑148 (MQ=255) tttATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGTTTTGTCTCGTTTCGAAAAAGGAAAAAAAATAACGCCAGGGGttt < 2:2170216/148‑1 (MQ=255) ggtggGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCgtg > 2:1395993/1‑148 (MQ=255) gggtggtggTGTTTGTGTCGGCAGCGTACAATGCACAAGCTTAAACCTGGTTGGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCTATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGa < 2:2384690/145‑1 (MQ=255) ggtggtggTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTTAAACCTGGTTCGATCCTGCTTTTTTCAAAGAGTATCCCTCAATGGTGGCCGTTTGGTCTCGTTTCTAAAATGCACAAAAAAACACGCCAGGGGTTTATCGTGTCGat < 2:1492799/146‑1 (MQ=255) ggtgggggTGTTTGTGTCGGCAGCTTTCACTGCACAAGCTTAAACCTGTTTCGATCCGGATTTTTTCAAACATGACCCCTCATGGGTGGCCTATTTGTCTCGTTTCGAAAAAGGAAAAAAAAAAACGCCAGGGGTTTATCGTGTCGat < 2:1492813/146‑1 (MQ=255) gtggtgTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGTTTCGATCCTGCTTTTTTAAAAGATTATCCCTCAATGGTGGCCTTTTTGTCTCGTTTCTAAAAAGGAAAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTg < 2:700422/148‑1 (MQ=255) gtggtgTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTg < 2:2465874/148‑1 (MQ=255) gtgtTTGTGTCGGCCGCTTTCAATCCACACGCTGAAACCTGTTTCCATCGTGCTTTTTTCAAAGATGAGCCCTCACGGGGGGCCGATTTGTCTCGTTTCTAAAAAGCACAAAAAAACACGCCAGGGGTTTATCGTGTCGATATTGTTc < 2:3046242/148‑1 (MQ=255) gtgtTTGTGTCGGCAGCTTTCAATGAACAAGCTTAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTc < 2:3222710/148‑1 (MQ=255) tgtgTCGGCAGCTTTCAATGCACAAGCTGAAACCTGTTTCTATCCTGATTTTTTAAAATATGATCCCTCAATGGTGGCCGTTTTGTCTCGTTTCTAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAAt < 2:779935/148‑1 (MQ=255) tgacGGCCGCTTACAATCCACAAGCTCAAACCTGGTTCGCTCCTGATTTTTCAAAAGATGCCCCCTAACTGGGGGCCTTTTTGTCTCGTTTCTAAAACGCACAAAAAATCACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCa < 1:235931/145‑1 (MQ=255) gtCGGCAGCGTTCAATGCAAACGCTTAAACCTGGTTCGATCCTGATTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCTTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAg < 2:2436503/148‑1 (MQ=255) tCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGa < 2:3252044/148‑1 (MQ=255) ggCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACa < 1:3035913/148‑1 (MQ=255) gCAGCGTTCAATGCACAAGCTGAACCCTGGTTCGATCCTGCTTTTTAAAACGATGATCCCACAAGGGGGGCCTATTTGTCTCGTTTCGAAAAAGGACAAAAAATCACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACaa < 1:1367348/148‑1 (MQ=255) gCAGCGTAAAATGCACACGCTCAAACCTGGTTCGATCCTTATTTTTTCAAAGATGACCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGTAAAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACaa < 1:1367352/148‑1 (MQ=255) ccgctttCAATGCCCAAGCTGAACGGGGTTTCGTTCCTGCTTTTTCAAATGATGAACCCTCAGGGGTGGCCGTTTTGTCTGTTTTCGAAAACGCAAAAAAAAAAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAAt < 1:152274/143‑1 (MQ=255) cGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGt > 1:4530/1‑148 (MQ=255) cGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGt > 2:2009808/1‑148 (MQ=255) gTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTa < 2:3123809/148‑1 (MQ=255) gTTAAATGCACAAGCTTAAACCGGTTTCGATCCTGATTTTTTAAAAGATGATCCCTCATTGGTGGCCGATTTTTCTGGTGTCTAAAAAGTAAAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTa < 2:3124033/148‑1 (MQ=255) tCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATCTTGTTCTGAATCAGACAATTGTAGa > 1:907179/1‑148 (MQ=255) aaTGAACAAGATTAACCCTGGTTCGATCCTGATTTTTTCAAAGATGATCCCTCAATGGTGGCCGTTTTGTCTCGTGTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATa < 2:3025271/148‑1 (MQ=255) aatgattaaaCCTGGTTCTATCCTTTTTTTTACAAAGATGATCCCTCATTGGTGGCCTTTTTGTCTCGTTTCTAAAAAGCACAAAAAAAAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCa < 1:213385/141‑1 (MQ=255) gCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACg > 1:591851/1‑148 (MQ=255) gAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCa > 1:3261610/1‑148 (MQ=255) tGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTttg > 2:1682601/1‑148 (MQ=255) tGGTTCGATCCTGCTTTTTTAAAATATGATCCCTCAATGGTGGCCGTTTTGTCTCGTTTCGAAAAAGGAAAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTttg < 2:815515/148‑1 (MQ=255) ggTTCGAGCCTGCTTTTTTCAAAGAGGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTttgt < 2:1927178/148‑1 (MQ=255) tttCGATCCTGTTTTTTACAAAGATGATCCCTCATTGGGGGCCTATTTGTCTCGTTTCTAAAAAGGAAAAAAAATCACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTttgtt < 2:127358/147‑1 (MQ=255) ttCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTttgttg > 1:2486237/1‑148 (MQ=255) ttCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTttgttg > 2:341118/1‑148 (MQ=255) tCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTga > 2:57935/1‑148 (MQ=255) taTCCTGCTTTTTTCAAAGATGATCCCTCATTGGTGGCCGATTTGTCTCTTTTCGAAAATGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTgaga < 2:2144304/147‑1 (MQ=255) gATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTgaga > 2:2293883/1‑148 (MQ=255) aTCCTTCTTTTTTCAAAGATGATCCCTAAAGGGGGGCCTATTTGTCTCGTTTCTAAAAAGCAAAAAAAATCACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGAt < 1:2948107/148‑1 (MQ=255) cttgattttttCAAAGTTCACCCCTCATGGGTGGCCGTTTTTTCTGGTTTCGAAAAAGGAAAAAAAATCACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATaa < 1:2313031/143‑1 (MQ=255) ccTGCTTTTTTCAAATATGATCCCTCACTGGTGGCCTATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATaa < 2:2452793/148‑1 (MQ=255) gCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGc > 2:425603/1‑148 (MQ=255) gCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGc > 2:425630/1‑148 (MQ=255) gCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGc > 2:3113743/1‑148 (MQ=255) cTTTTTTCAAAGATGATCCCTCAATGGTGGCCTATTTGTCTCTTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGcc < 2:2416963/148‑1 (MQ=255) ttttttCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCa > 2:1571799/1‑148 (MQ=255) ttCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACACTTGTAGATACGCGCAACGTCAATTTTGTTGTGATAACGCCAgaga > 2:2596809/1‑148 (MQ=255) aaaaaTATGACCCCTAATTGGGGGCCGTTTGGTCTCTTTTCTAAAAACCAAAAAAAAAAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGaa < 1:2537619/146‑1 (MQ=255) cAACGATGATCCCTCATTGGTGGCCTTTTTGTCTCGTTTCCAAAAAGCACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAg < 1:541269/148‑1 (MQ=255) cAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAg > 2:104557/1‑148 (MQ=255) aaaGATGACCCCTATTGGGTGGCCTTTTTGTCTCTTTTCTAAAAAGCAAAAAAAAACACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAgg < 1:2064505/148‑1 (MQ=255) aaGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAggg > 2:588900/1‑148 (MQ=255) aGATGAGCCCTAATTGTTGGCCGATTTGTCTCTTTTCTAAAAAGTAAAAAAAATCACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAgggg < 1:2435180/148‑1 (MQ=255) gatCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTg > 2:1195770/1‑148 (MQ=255) agcccTCAATGGTGGCCGATTTGTCTGGTGTCCAAAACGCACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTgc < 2:850908/146‑1 (MQ=255) ccTCATTGGTGGCCTATTTGTCTCGTTTCTAAAAAGCAAAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTgccgc < 1:3196505/148‑1 (MQ=255) ccTCAATGGTGGCCGATTTGTCTCTTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTgccgc < 2:146866/148‑1 (MQ=255) tCAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCt > 1:728616/1‑148 (MQ=255) cattggtggCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTg < 2:1614715/145‑1 (MQ=255) cAATGGTGGCCGATTTGTCTCGTGTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTg > 2:2269903/1‑148 (MQ=255) aTGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCCGACAATTTTAGATACGCGCAACGTCAATTTTGTTGAGATAAAGCCAGAGAAGGGGATTGCCGCCTGtt > 1:2460383/1‑148 (MQ=255) tggtggCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGttt > 1:2861234/1‑148 (MQ=255) tggtggCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGttt > 1:1855007/1‑148 (MQ=255) gtggCCGATTGGTCTCGTTTCCAAAAAGCAAAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTga < 1:2394780/148‑1 (MQ=255) tGTCTCTTGTCTAAAAAGTACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAg < 2:2213945/148‑1 (MQ=255) ttctcTTTTCTAAAAATTAAAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGc < 2:1968611/147‑1 (MQ=255) tctcGTGTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGcc > 2:438340/1‑148 (MQ=255) ctcGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCt > 2:2186665/1‑148 (MQ=255) tcGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTg > 2:2559909/1‑148 (MQ=255) tcGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTg > 1:2904504/1‑148 (MQ=255) tcGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTg > 1:2904490/1‑148 (MQ=255) cttttCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTgg < 2:1904279/146‑1 (MQ=255) cGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAAAATTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTgg > 2:1946836/1‑148 (MQ=255) cGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAAAATTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTgg > 2:277060/1‑148 (MQ=255) ttCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATg > 2:508772/1‑148 (MQ=255) ttCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATg > 2:128656/1‑148 (MQ=255) | CACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGATACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATG > CP009273/994693‑994987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |