| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,388,406 | G→T | 100% | R308L (CGC→CTC) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,388,406 | 0 | G | T | 100.0% | 718.3 / NA | 213 | R308L (CGC→CTC) | mppA | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (110/103); total (110/103) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 215 total aligned reads displayed.
GGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCGCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGCCGTTTGAACAAATGA > CP009273/1388261‑1388549 | ggggATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGctcg < 1:2414312/148‑1 (MQ=255) gggATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGt > 1:3238228/1‑148 (MQ=255) gggATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGt < 2:331687/148‑1 (MQ=255) gATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCATAAGCTGTTGAAGGATATTCAGGTGCAGGTTTATAAGCCGCAGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTc > 2:2455562/1‑148 (MQ=255) ttGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCt > 2:890641/1‑148 (MQ=255) tGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTg > 2:1695953/1‑148 (MQ=255) atCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCAt < 2:751893/148‑1 (MQ=255) aCCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTaa < 1:2116299/148‑1 (MQ=255) cGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGt < 2:117550/148‑1 (MQ=255) gAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTa < 1:2879019/148‑1 (MQ=255) aTCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATg > 2:3273742/1‑148 (MQ=255) aTCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATg > 2:787510/1‑148 (MQ=255) aTCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATg < 2:1496190/148‑1 (MQ=255) tCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGa > 2:1013249/1‑148 (MQ=255) tCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGa < 1:1055972/148‑1 (MQ=255) ttCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGa < 1:147171/148‑1 (MQ=255) tCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGAt > 2:2058957/1‑148 (MQ=255) cccGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATa > 2:3131160/1‑148 (MQ=255) ccGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAg < 2:3048938/148‑1 (MQ=255) ccGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAg < 1:2915636/148‑1 (MQ=255) cGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGTGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGa < 2:142331/148‑1 (MQ=255) cGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGa > 1:123109/1‑148 (MQ=255) gAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAATAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGAt > 2:135421/1‑148 (MQ=255) gAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGAt > 1:1359694/1‑148 (MQ=255) aaaaTATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATcg > 1:87216/1‑148 (MQ=255) aaaTATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATcgc > 1:2900584/1‑148 (MQ=255) atatGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATcgccg < 1:5003/148‑1 (MQ=255) tatGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATcgccgc > 2:641677/1‑148 (MQ=255) gTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCtg > 1:3302724/1‑148 (MQ=255) gTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCtg > 2:1569001/1‑148 (MQ=255) tATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCtga < 2:1178886/148‑1 (MQ=255) cAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCtgatga < 1:473179/148‑1 (MQ=255) cAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCtgatga > 2:3027004/1‑148 (MQ=255) cAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCtgatga > 2:2252718/1‑148 (MQ=255) aGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGAc < 1:612907/148‑1 (MQ=255) gAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGAcc > 1:1843990/1‑148 (MQ=255) gAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGAcc > 1:1184745/1‑148 (MQ=255) aaGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCg > 1:187370/1‑148 (MQ=255) aaGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCg > 1:1727069/1‑148 (MQ=255) cTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGaaa < 2:1056358/148‑1 (MQ=255) gTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGaaaaa < 1:193062/148‑1 (MQ=255) tGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGt > 2:813369/1‑148 (MQ=255) tGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGt > 1:2643837/1‑148 (MQ=255) aGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTAtt > 2:311192/1‑148 (MQ=255) aGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTAtg > 2:2565412/1‑147 (MQ=255) tatTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAggg < 1:1946855/148‑1 (MQ=255) tatTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAggg < 1:10998/148‑1 (MQ=255) atTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGa > 2:1941395/1‑148 (MQ=255) atTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGa < 1:1191764/148‑1 (MQ=255) tCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACg < 2:2003349/148‑1 (MQ=255) tCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACg < 2:1387670/148‑1 (MQ=255) cGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACggg < 2:2259452/148‑1 (MQ=255) ggCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGa > 2:361829/1‑148 (MQ=255) gTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGc > 2:3310576/1‑148 (MQ=255) ttATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGACGAAAAGCCa > 1:1659466/1‑148 (MQ=255) cTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTacac < 1:2706088/148‑1 (MQ=255) gggACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAg < 2:3154229/148‑1 (MQ=255) gggACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAg < 1:2751543/148‑1 (MQ=255) ggACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGa > 2:2274572/1‑148 (MQ=255) ggACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGa > 1:2134008/1‑148 (MQ=255) aCCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATg > 1:316958/1‑148 (MQ=255) ccTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGt < 1:311192/148‑1 (MQ=255) tattattatGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTa < 1:1892539/148‑1 (MQ=255) tattattatGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTa < 2:2548349/148‑1 (MQ=255) attattatGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTAc > 1:372671/1‑148 (MQ=255) attattatGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTAc > 1:319810/1‑148 (MQ=255) attattatGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTAc > 1:1985452/1‑148 (MQ=255) attattatGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTAc > 1:708100/1‑148 (MQ=255) ttattatGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTAcc > 2:2780451/1‑148 (MQ=255) tattatGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACcg > 1:3041803/1‑148 (MQ=255) tattatGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACcg > 2:2618472/1‑148 (MQ=255) tatGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCgg < 2:429734/148‑1 (MQ=255) tatGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCgg > 2:2753237/1‑148 (MQ=255) atGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCggg < 1:1499485/148‑1 (MQ=255) tGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGa < 1:2562026/148‑1 (MQ=255) gCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGAt < 1:2810525/148‑1 (MQ=255) gCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGAt > 1:2646456/1‑148 (MQ=255) cGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGAtt < 1:2547621/148‑1 (MQ=255) cGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGAtt < 1:890641/148‑1 (MQ=255) ttAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTAc > 1:1292656/1‑148 (MQ=255) ttAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTAc < 2:2366903/148‑1 (MQ=255) tAACACGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACg > 2:2801965/1‑148 (MQ=255) cacGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCg > 2:2200714/1‑148 (MQ=255) cGCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGa > 2:3078707/1‑148 (MQ=255) gCAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGaa < 2:657094/148‑1 (MQ=255) cAAAAAGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAAc < 2:2479566/148‑1 (MQ=255) aaaaGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCt < 1:111251/148‑1 (MQ=255) aaaaGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCt > 1:663085/1‑148 (MQ=255) aaaGGGCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCtt > 1:1516342/1‑148 (MQ=255) gggCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGc > 2:266624/1‑148 (MQ=255) gCCGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGCCg < 1:2058957/148‑1 (MQ=255) ccGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGCCGt < 1:2252718/148‑1 (MQ=255) cgtcGGCAGATCAGCTCGTTCGTCTGGCATTTAGTATGACTATAGATCGCCGCCTGATGAACGTATTAGTATTAGTGACGGTCGAAAAGCCAGAGTGGCATTTTACACCAGATGTTTACGCGGTATTTTCGCCGGAACCTTAGCCGtt < 2:2812831/145‑1 (MQ=255) cGACGGCAGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGCCGtt < 1:2455562/148‑1 (MQ=255) aGATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGCCGTTTGAACaa < 1:1440244/148‑1 (MQ=255) gATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGCCGTTTGAACaaa < 1:1186629/148‑1 (MQ=255) gATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGCCGTTTGAACaaa > 2:2605499/1‑148 (MQ=255) gATCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGCCGTTTGAACaaa > 2:1458229/1‑148 (MQ=255) tCAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGCCGTTTGAACAAATg > 1:2494576/1‑148 (MQ=255) cAGCTCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGCCGTTTGAACAAATGa < 2:1509052/148‑1 (MQ=255) | GGGGATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCGCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTATTAGGGACGGGCGAAAAGCCAGCGTGGCATTTTACACCAGATGTTACCGCGGGATTTACGCCGGAACCTTCGCCGTTTGAACAAATGA > CP009273/1388261‑1388549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |