| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,996,056 | A→T | 18.5% | I344I (ATT→ATA) | fliC ← | flagellar filament structural protein (flagellin) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,996,056 | 0 | A | T | 18.5% | 425.0 / 91.8 | 179 | I344I (ATT→ATA) | fliC | flagellar filament structural protein (flagellin) |
| Reads supporting (aligned to +/- strand): ref base A (76/70); new base T (11/22); total (87/92) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.65e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.64e-01 | |||||||||||
Only 100 of 182 total aligned reads displayed.
AGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGTTGGCAGT > CP009273/1995909‑1996202 | gTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTaa < 2:896672/148‑1 (MQ=255) cAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATa > 1:148544/1‑148 (MQ=255) cAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATa > 1:148580/1‑148 (MQ=255) aaaCCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAg < 1:81539/148‑1 (MQ=255) tGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTa > 2:2097137/1‑148 (MQ=255) tGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTa < 2:3278705/148‑1 (MQ=255) tGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTa > 1:743976/1‑148 (MQ=255) tGTTTGCAGATTACCGCCATGTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTa < 2:3161603/148‑1 (MQ=255) tttGCAGATTACCGCCATTTAAATCGGCAGAATAGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAAc > 2:2561392/1‑148 (MQ=255) ttGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACa > 2:2047282/1‑148 (MQ=255) cAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGaa < 2:622742/148‑1 (MQ=255) aGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGaaa < 2:349473/148‑1 (MQ=255) aTTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACa > 2:3071966/1‑148 (MQ=255) aTTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAAGATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACa < 2:1340751/148‑1 (MQ=255) tACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGc < 2:1671967/148‑1 (MQ=255) tACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGc < 2:443196/148‑1 (MQ=255) tACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGc > 2:1705551/1‑148 (MQ=255) aCCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCa < 1:3272877/148‑1 (MQ=255) ccATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCag > 2:2037365/1‑148 (MQ=255) aTTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCagta > 2:1989025/1‑148 (MQ=255) ttAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCagtagt > 2:132466/1‑148 (MQ=255) aaTCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTGTAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTttc > 1:2297301/1‑148 (MQ=255) aTCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTttca < 2:2634242/148‑1 (MQ=255) aTCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTttca > 2:843910/1‑148 (MQ=255) tCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTttcat < 1:1874948/148‑1 (MQ=255) tCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTttcat < 1:2648991/148‑1 (MQ=255) tCGGCAGAATAGTATGTTTTACCATCAATATCGACCCCTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTTGAGAACTGGCGGCACCTGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTttcat < 1:58305/148‑1 (MQ=255) cGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTttcatt < 1:1561031/148‑1 (MQ=255) ggCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTttcattc > 1:1871556/1‑148 (MQ=255) ggCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTttcattc > 1:310919/1‑148 (MQ=255) cAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTcac < 2:976737/148‑1 (MQ=255) cAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTcac < 2:3082378/148‑1 (MQ=255) aGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTcaca > 1:1323903/1‑148 (MQ=255) aGAATCGTATGTTTTACCATCAAAATCGACCACTTCTGTTTTGCCATCATCTACGCCCAGTTTGAACGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTACAAGTTTTAACAGAAACAGCACCACTAGTTTCATTcaca > 1:2972499/1‑148 (MQ=255) gAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACAt < 1:400086/148‑1 (MQ=255) aaTCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATc > 1:1336933/1‑148 (MQ=255) aaTCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATc > 1:146403/1‑148 (MQ=255) aaTCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATc > 2:691183/1‑148 (MQ=255) aaTCGTATGTTTTACCATCAATATAGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATc > 1:20831/1‑148 (MQ=255) aTCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATcc > 1:2415823/1‑148 (MQ=255) cGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTAACATCCGc > 1:632694/1‑148 (MQ=255) tATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAg < 2:1457492/148‑1 (MQ=255) aTGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGc < 2:117832/148‑1 (MQ=255) ttttACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTa > 2:1589018/1‑148 (MQ=255) tttACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTaa < 1:672148/148‑1 (MQ=255) ttACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTaaa < 2:1232871/148‑1 (MQ=255) tACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAg < 2:2144986/148‑1 (MQ=255) tACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAg < 2:1310307/148‑1 (MQ=255) ccATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAATGAt > 1:2017096/1‑148 (MQ=255) aTCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTg < 1:2044072/148‑1 (MQ=255) aTCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTg < 1:269965/148‑1 (MQ=255) tCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGc > 2:2606268/1‑148 (MQ=255) cAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGcc < 2:182443/148‑1 (MQ=255) aaTATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCa < 2:191263/148‑1 (MQ=255) atatCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCAt > 1:650760/1‑148 (MQ=255) tatCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCAtt > 1:2728380/1‑148 (MQ=255) atCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCAttt < 1:2791214/148‑1 (MQ=255) tCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTg > 2:77845/1‑148 (MQ=255) cGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGt > 2:2005138/1‑148 (MQ=255) gACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTa > 1:941311/1‑148 (MQ=255) ccACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATc > 2:1047454/1‑148 (MQ=255) cACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCt < 2:878463/148‑1 (MQ=255) cACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCt < 2:38312/148‑1 (MQ=255) ttCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTa > 1:1708384/1‑148 (MQ=255) cTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAg > 1:1681367/1‑148 (MQ=255) tGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCata > 2:2369765/1‑148 (MQ=255) ccATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATg < 1:2215182/148‑1 (MQ=255) ccATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATg > 1:905691/1‑148 (MQ=255) catcatCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGt < 1:2109793/148‑1 (MQ=255) tcatcTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGGTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTAt > 2:139401/1‑148 (MQ=255) catcTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATc < 2:310919/148‑1 (MQ=255) atcTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCg < 1:2523846/148‑1 (MQ=255) ctcCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGt < 1:2097137/148‑1 (MQ=255) cGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATc < 1:2898921/148‑1 (MQ=255) gCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCa < 1:2561392/148‑1 (MQ=255) cccAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAgcgc < 2:2246026/131‑1 (MQ=255) tttGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTAccc < 2:676258/148‑1 (MQ=255) tttGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTAccc < 2:675770/148‑1 (MQ=255) aCCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTgg > 1:3123994/1‑148 (MQ=255) ccGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGa > 1:1410859/1‑148 (MQ=255) cgcgGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGaa < 1:341547/148‑1 (MQ=255) cgGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATc < 1:90517/148‑1 (MQ=255) cgGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAAGAGATTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATc < 2:2517389/148‑1 (MQ=255) ttGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTg > 1:1422458/1‑148 (MQ=255) gagaACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAg > 2:2929264/1‑148 (MQ=255) gaACTGGCGGCACCGGAAGAGTCAGTATAGGTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGtt < 2:3210956/148‑1 (MQ=255) aCCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTa < 2:2802035/148‑1 (MQ=255) cGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAAc < 1:86495/148‑1 (MQ=255) gAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAg > 1:2850175/1‑148 (MQ=255) gAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAg > 1:1157110/1‑148 (MQ=255) gAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAg > 1:1157216/1‑148 (MQ=255) gAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTAACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCAATACCCTTGGAATCCAGCAGTTTTACTAAGCTAACAg > 1:2991/1‑148 (MQ=255) aaGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGc > 1:2794706/1‑148 (MQ=255) cAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAg > 2:2963784/1‑148 (MQ=255) gTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGt < 2:2311973/148‑1 (MQ=255) gTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGt < 2:1336933/148‑1 (MQ=255) tataGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGtt > 2:1491926/1‑148 (MQ=255) ataGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGTTg > 2:107747/1‑148 (MQ=255) ggTTATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGTTGGCa < 1:2606268/148‑1 (MQ=255) gTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATACTGCAGTTTTAATAAGCTAACAGCACCAAGGTTGGCAg > 1:2149910/1‑148 (MQ=255) | AGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTTTACCATCAATATCGACCACTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAAGAGTCAGTATAGGTAATAGTTTTAACAGAAACAGCACCAGTAGTTTCATTCACATCCGCAGCGTAAAGATTGCCATTTGTATCTTTAAGCGCATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGTTGGCAGT > CP009273/1995909‑1996202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |