| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,708 | G→T | 16.4% | intergenic (‑25/+283) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,708 | 0 | G | T | 16.4% | 408.2 / 16.9 | 177 | intergenic (‑25/+283) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (61/79); new base T (6/30); total (68/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.51e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 180 total aligned reads displayed.
CAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCG > CP009273/2170561‑2170855 | cAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑Cg < 2:2630733/148‑1 (MQ=255) aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGa < 1:3070578/148‑1 (MQ=255) ttGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑GGAttt > 2:677110/1‑148 (MQ=255) ttGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑AGAttt > 2:677109/1‑148 (MQ=255) aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGGATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCaaaa < 1:354479/148‑1 (MQ=255) aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCaaaa < 2:2247/148‑1 (MQ=255) cGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTT‑TTATTTAaaaaat > 1:2503380/1‑146 (MQ=255) cGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAa‑ta < 2:1463797/148‑1 (MQ=255) tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑AGATTTGAAAA‑TAT‑aa > 2:417909/1‑148 (MQ=255) ttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AAt < 2:1517064/148‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGa < 2:1353951/148‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGa < 1:1862300/148‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGa < 2:1798828/148‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CTATTTCAAAA‑TAT‑AATGaaa < 2:167331/148‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CTATTTCAAAA‑TAT‑AATGaaa < 2:1838022/148‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGaaa < 2:2732481/148‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGaaa < 1:2742981/148‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGaaa < 2:444464/148‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑CGATTTCAAAA‑TAT‑AATTaaa > 2:2948935/1‑148 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑AGATTTAAAAA‑AAT‑AAAGaaa > 1:112764/1‑148 (MQ=255) ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑GGATTTAAAAA‑TAT‑AAtttaat > 2:1141079/1‑143 (MQ=255) ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAat < 1:335910/148‑1 (MQ=255) ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑AAT‑AATTAAat > 2:1843523/1‑148 (MQ=255) caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAatt < 1:3159760/148‑1 (MQ=255) accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAatta < 1:2510472/148‑1 (MQ=255) accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAatta < 2:1026868/148‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAattatt < 2:2153285/148‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑CGATTTCAAAA‑TAT‑AAATAAattatt > 2:455164/1‑148 (MQ=255) cgtGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTg < 1:3174295/146‑1 (MQ=255) cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTg < 2:480558/148‑1 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑AGATTTAAAAA‑AAT‑AAAGAAAATAttttt > 1:1075843/1‑146 (MQ=255) tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑AGATTTCAAAA‑TAT‑AATTAAATTAtttttt > 2:501874/1‑148 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑TGTTTTTAAAA‑AAA‑AATTAAAATAtttttttt > 1:1506801/1‑148 (MQ=255) ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAata < 2:1443990/148‑1 (MQ=255) tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAatat < 1:2087731/148‑1 (MQ=255) tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAatat < 1:3259278/148‑1 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCg < 1:798766/148‑1 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCg < 2:1154370/148‑1 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTT‑TGATTTAAAAA‑AATAAATAAAATAATTTTTTTTTaatttaaa > 1:2301374/1‑142 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCgag < 2:2487438/148‑1 (MQ=255) aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑GGATTTCAAAA‑AAT‑AATGAAAATATTTTTTTTTTAATATAgaga > 2:881091/1‑148 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑TGATTTGAAAA‑TAA‑AAATTAAAAATTTTTTTTTTAATATAGAGATAAcc > 1:2933885/1‑147 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGAt < 2:2869584/148‑1 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGAt < 1:197771/148‑1 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTTAATATAGAGTTAAAGATca > 2:2365009/1‑148 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATca < 1:2613161/148‑1 (MQ=255) ttGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑GTATTTAAAAA‑TAT‑AATGTAATTATTTGTTTTTTAAAATCGAGATAACCATcaa > 2:1057893/1‑147 (MQ=255) aaTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑GGTTTTGAAAA‑TAT‑AATGAAAATATTTTTTTTTTAATATCGAGATAACGATCACaaa > 2:1037559/1‑148 (MQ=255) aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaa < 1:2714290/148‑1 (MQ=255) aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaa < 1:487979/148‑1 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaaa < 1:1127072/148‑1 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGAc < 2:3268791/148‑1 (MQ=255) tAACCGCCGCGCTGTGCTTTTTTCAGCATCTGCTTTGTCGATACCACGTAAATTTTAATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGaaa < 2:2354771/148‑1 (MQ=255) tAACCGCCGCGCTGGGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTGT‑CGATTTAAAAA‑TAT‑AATGAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGaaa < 2:781283/148‑1 (MQ=255) aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACTTACTTTTTCATATCCTGTCGTTTTTTTT‑CGATTTCAAAA‑TAT‑AATCAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAACACGACAATATGaaaa < 2:953093/148‑1 (MQ=255) aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTACAATTAAAAAA‑AAA‑AATAAAATAAATT‑TTTTTAAATAAAGACATAAAGTTAAAAAAAAAAAAAatatttaaa > 1:1397446/1‑143 (MQ=255) aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑CGATTTAAAAA‑TAT‑AATTTAATTATTTTTTTTTTAATATAGAGATAACGATAAAAAAAACGACAATATGataa > 2:238552/1‑148 (MQ=255) acggccgcGGTGTGCGTTGTTCAGAATCTGCTTTTTCTATACCACTTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTAAAAA‑TAT‑AATTAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAat < 2:3200557/145‑1 (MQ=255) aCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGGTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAat > 2:3034707/1‑148 (MQ=255) aCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTT‑GGATTTGAAAA‑TAT‑AATGAAAATAATTTTTTTTAAATATGGAGATAACGATCACAAAAAAGACAATATGaaaaa > 2:2815395/1‑147 (MQ=255) cgccgcGCTGTGCGTTGTTCAGCATCTGCTTTTTCGATACCACGTACATTTTCATATCCTGTCTTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAatta < 2:521734/148‑1 (MQ=255) cgccgcGCTGTGCGTTGTTCAGCATCTGCTTGGTCGATACCCCGTACATTTTCATATCCGGACGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAatta < 2:2981850/148‑1 (MQ=255) gcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑AGATTTCAAAA‑TAT‑AAATAAATTATTTTTTTTTAAATAAAGAGATAACGATCAAAAAAAACACAAAATTAAAAATATTagag > 2:3222796/1‑148 (MQ=255) gtgGGTTGTTCCGAATATTCTTTTTCTATACCACGTAAATTTTCATATCTTGTGTTTTTTTTT‑CGATTTAAAAA‑TAT‑AATTAAATTTTTTTTTTTTAAATATCGAGTTAACTATCACAAAAACGACAATATGAAAATTATTCgaggag < 2:1068356/148‑1 (MQ=255) tgCGTTGTTCAGCAACTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGt < 2:1101821/148‑1 (MQ=255) ttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑GGATTTAAAAA‑AAA‑AAATAAAATAATTTTTTTTAAATATAGAGATAAAGATCACAAAAACGACAAAAAGAAAAATATTGGAGGAGTGcaa > 2:1237016/1‑148 (MQ=255) tttacAGCATCTGCTTTGTCTAAACCACTTACATTTTCATATCGTGTCGTTTGTTTT‑CTATTTCAAAA‑TAT‑AATGAAATTTTTTTTTTTTAAATATCGAGATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAg < 1:520810/144‑1 (MQ=255) gtccaccATCTGCTTTGTCGATCCCACTTAAATTTTCTTCTCCTGACTTTTGTTTT‑CGATTACAAAA‑TAT‑AATCAAATTTTTTTTTTTTAAATATCGATATAACGAACACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAgg < 1:689159/142‑1 (MQ=255) ttCAGAATCTGCTTTGTCGATACCACTTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTTTTTTAAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGc < 2:3304885/148‑1 (MQ=255) tacAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGc < 2:2183411/146‑1 (MQ=255) cAGCATCTTCTTTGTCCACACCACGTATATTTTAATATCCTGTGTTTTTTTTT‑CTATTAAAAAA‑TAT‑AATAAATTTTTTTTTTTTTAAATATCGATATCACGAACACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaa < 1:3056808/148‑1 (MQ=255) cgCATCTGCTTTGTCGATACCACTTACATTTACATACCCTGTCTTTTTTTTT‑CTTTTTAAAAA‑TAT‑AATTAATTTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaa < 1:1904457/147‑1 (MQ=255) agaaTCTGCTTTGTCTATCCCAGCTACTTTTTAATATCCTGTGTTTTTTTTT‑TGTTTAAAAAT‑TAT‑ATTCAATTTTTTTTTTTTTAAATATCGAGAAAACGTTCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaa < 1:885358/145‑1 (MQ=255) aTCTGTTTTTTCGATCCCAGGTACTTTTTCATCTCCTTTCTTTTTTTTT‑CTATTACAAAA‑TAT‑AATGAAATTATTTTTTTTTAAATATCGATATAACGATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaa < 1:2396839/148‑1 (MQ=255) tattattttTCTATACAACCTAAATTTTAATATCCTGTGTTTTGTTTT‑ATATTTAAAAA‑TAT‑AATTAAATTTTTTTTTTTAAAATATCTATAAAACTAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaaa < 1:1188866/143‑1 (MQ=255) cTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTT‑AGATTTGAAAA‑TAT‑AATTAAATTATTTTTTTTTTAATATCGTGATAACGATCACAAAAAAGAAAAAAAGAAAAATATTGGCGGGGTGAAACGCacaaaaaa > 2:1977716/1‑147 (MQ=255) cTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑AGTTTTGAAAA‑TAT‑AATTAAATTATTTTTTTTTTAAATTAGAGTTAAAGATCACAAAAAAGACAATATGTAAATTTTTGGGGGTGGGTAAGGCAAAAAAACGGc > 2:3140523/1‑148 (MQ=255) cTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑AGTTTTAAAAA‑TAA‑AATGAAATTATTTTTTTTTATATATAGAGATAAAAATAACAAAAACGAAAATAAGAAAATTATAAGAGGAGTGAAAGGCaacaaaaagtc > 2:3139917/1‑144 (MQ=255) cGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑GGATTTCAAAA‑TAT‑AATTTAAATATTTTTTTTTATATATAGTGATAAAGAACACAAAAAAGACAAAATTTAAATTATTTGAGGTGGGTAAGGGCAAAAAACTGCCTGCCg > 2:2005964/1‑148 (MQ=255) gTAAATTTTCATATCCTGTCTTTTTTTTT‑CTATTTCAAAA‑TAT‑ATTGAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAg < 2:1256592/148‑1 (MQ=255) aCATTTTCATATCCTGTCGTGTGTTTT‑GGATTTGAAAA‑TAT‑AAAGAAAATATTTTTTTTTAAATATAGAGAAAACGAACACAAAAACGACAATATTTAAATTATTGGATGTGTGTAATGCAAAAAAAAGGGCGCCCCATAGGGAAGcc > 2:2959517/1‑148 (MQ=255) tttttCATTGCCTGTGTTTTTTTTT‑CTTTTAAAAAA‑TAT‑AATAAATTTTTTTTTTTTTAATTATGGATATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGt < 1:532652/147‑1 (MQ=255) tttCATATCCTGTCGTTTGTTTT‑CTATTTAAAAA‑TAT‑AATGAAATTATTTTTTTTTAAATATCTAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 2:2920657/148‑1 (MQ=255) tttCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 2:1271837/148‑1 (MQ=255) cagatCCTGTCGTTTGTTTT‑CTTTTTCAAAA‑TAT‑AATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaa < 2:1222041/145‑1 (MQ=255) cATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaa < 2:1782950/148‑1 (MQ=255) tCCTGTTGTTTTTTTT‑CTTTTAAAAAA‑TAT‑AATTAAATTTTTTTTTTTTAAATATCGATATAACGAAAAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 1:501874/148‑1 (MQ=255) tggcttttttttt‑CTATTTAAAAA‑TAT‑AATTAATTTTTTTTTTTTTAAATATCGATATAACTAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgcgc < 1:1587542/143‑1 (MQ=255) ggtgttttttttt‑CTATTTAAAAA‑TAT‑AATTAATTTATTTGTTTTTAAATATCTATAAAACGAACACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgcgc < 1:981953/143‑1 (MQ=255) tttctttttttt‑CTTTTTAAAAATTTT‑AATAAATTTTTTTTTTTTAAAATATCCATAAAACTAACAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgcgc < 1:1698606/144‑1 (MQ=255) tttgtttT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:729880/1‑148 (MQ=255) ttttttt‑CTATTAAAAAA‑TAT‑AATAAAATTTTTTTTTTTTAAATATCTATATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt < 1:677110/145‑1 (MQ=255) ttgtttT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:306142/1‑148 (MQ=255) ttgtttT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 1:2381717/1‑148 (MQ=255) tgtttT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt > 1:1032232/1‑148 (MQ=255) ttttt‑CTATTAAAAAA‑TAT‑AATTAATTTTTTTTTTTTTAAATATCTATATAACTAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt < 1:969156/147‑1 (MQ=255) gtttT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt < 2:3143954/148‑1 (MQ=255) ttt‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 1:1263350/1‑148 (MQ=255) t‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGc > 2:1083107/1‑148 (MQ=255) gATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCg > 2:2191407/1‑148 (MQ=255) | CAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTTCAAAA‑TAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCG > CP009273/2170561‑2170855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |