| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,713 | C→A | 24.6% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,713 | 0 | C | A | 24.6% | 313.8 / 27.7 | 179 | intergenic (‑30/+278) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base C (35/84); new base A (19/25); total (70/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 181 total aligned reads displayed.
AGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGC > CP009273/2170570‑2170860 | aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑Caaaa < 1:354241/148‑1 (MQ=255) gCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAat < 1:307970/148‑1 (MQ=255) cGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAata < 2:1463797/148‑1 (MQ=255) cGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑GTATTT‑Taaaaaa > 1:2503367/1‑146 (MQ=255) gTTTCTCCCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAAtat‑a < 2:2750314/148‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGa < 2:1353951/148‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGa < 2:1798828/148‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTT‑CGATTT‑CAAAATAT‑AATTaaa > 2:2949094/1‑148 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CTATTT‑CAAAATAT‑AATGaaa < 2:167331/148‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CTATTT‑CAAAATAT‑AATGaaa < 2:1838022/148‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGaaa < 2:1590621/148‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGaaa < 1:2742981/148‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑CGATTT‑CAAAATAT‑AATTaaa > 2:2948935/1‑148 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑AGATTT‑AAAAAAAT‑AAAGaaa > 1:112764/1‑148 (MQ=255) ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑GGATTT‑AAAAATAT‑AAtttaat > 2:1141079/1‑143 (MQ=255) caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAatt < 1:3159760/148‑1 (MQ=255) caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAatt < 2:2613769/148‑1 (MQ=255) accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAatta < 1:2510418/148‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAattatt < 2:2153285/148‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑CGATTT‑CAAAATAT‑AAATAAattatt > 2:455164/1‑148 (MQ=255) cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTg < 1:1532662/148‑1 (MQ=255) cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTg < 2:480558/148‑1 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑AGATTT‑AAAAAAAT‑AAAGAAAATAttttt > 1:1075843/1‑146 (MQ=255) tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTAtttttt > 2:501896/1‑148 (MQ=255) tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑AGATTT‑CAAAATAT‑AATTAAATTAtttttt > 2:501874/1‑148 (MQ=255) cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTaa < 1:695986/148‑1 (MQ=255) cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTaa < 2:3140885/148‑1 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAat < 1:1801865/148‑1 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAat < 1:771986/148‑1 (MQ=255) ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAata < 2:1443990/148‑1 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCg < 2:1154370/148‑1 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTT‑TGATTT‑AAAAAAATAAATAAAATAATTTTTTTTTaatttaaa > 1:2301374/1‑142 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCgag < 2:2413471/148‑1 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCgag < 1:530562/148‑1 (MQ=255) aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑GGATTT‑CAAAAAAT‑AATGAAAATATTTTTTTTTTAATATAgaga > 2:881091/1‑148 (MQ=255) ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTTTTTTTTAATATGGAGAt > 2:1969733/1‑148 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑TGATTT‑GAAAATAA‑AAATTAAAAATTTTTTTTTTAATATAGAGATAAcc > 1:2933885/1‑147 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGAt < 1:197771/148‑1 (MQ=255) tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATc < 2:374173/148‑1 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTTAATATAGAGTTAAAGATca > 2:2365009/1‑148 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATca < 1:2614460/148‑1 (MQ=255) ttGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑GTATTT‑AAAAATAT‑AATGTAATTATTTGTTTTTTAAAATCGAGATAACCATcaa > 2:1057893/1‑147 (MQ=255) gAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaa < 1:3293498/148‑1 (MQ=255) aaTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑GGTTTT‑GAAAATAT‑AATGAAAATATTTTTTTTTTAATATCGAGATAACGATCACaaa > 2:1037559/1‑148 (MQ=255) aaTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAAATATTTTTTTTTTAATATAGAGATAAAGATCACaaa > 2:1037527/1‑148 (MQ=255) aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaa < 1:487979/148‑1 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaaa < 1:1127072/148‑1 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGAc < 2:3268791/148‑1 (MQ=255) gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTT‑CGATTT‑GAAAATAT‑AATGTAATTATTTGTTTTTTAATATAGAGATAAAGATCACAAAAACGACa > 2:1102619/1‑148 (MQ=255) tAACCGCCGCGCTGTGCTTTTTTCAGCATCTGCTTTGTCGATACCACGTAAATTTTAATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGaaa < 2:2354771/148‑1 (MQ=255) tAACCGCCGCGCTGGGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTGT‑CGATTT‑AAAAATAT‑AATGAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGaaa < 2:781283/148‑1 (MQ=255) aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACTTACTTTTTCATATCCTGTCGTTTTTTTT‑CGATTT‑CAAAATAT‑AATCAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAACACGACAATATGaaaa < 2:953093/148‑1 (MQ=255) aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTACAATTA‑AAAAAAAA‑AATAAAATAAATT‑TTTTTAAATAAAGACATAAAGTTAAAAAAAAAAAAAatatttaaa > 1:1397446/1‑143 (MQ=255) cgccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CTATTT‑CAAAATAT‑AATTAAATTATTTGTTTTTAAATATCGATATAACTATCACAAAAACGACAATATGAAAatta < 2:423675/148‑1 (MQ=255) cgccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAatta < 2:3017914/148‑1 (MQ=255) gcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑AGATTT‑CAAAATAT‑AAATAAATTATTTTTTTTTAAATAAAGAGATAACGATCAAAAAAAACACAAAATTAAAAATATTagag > 2:3222796/1‑148 (MQ=255) gtgGGTTGTTCCGAATATTCTTTTTCTATACCACGTAAATTTTCATATCTTGTGTTTTTTTTT‑CGATTT‑AAAAATAT‑AATTAAATTTTTTTTTTTTAAATATCGAGTTAACTATCACAAAAACGACAATATGAAAATTATTCgaggag < 2:1068356/148‑1 (MQ=255) ttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑GGATTT‑AAAAAAAA‑AAATAAAATAATTTTTTTTAAATATAGAGATAAAGATCACAAAAACGACAAAAAGAAAAATATTGGAGGAGTGcaa > 2:1237016/1‑148 (MQ=255) gtccaccATCTGCTTTGTCGATCCCACTTAAATTTTCTTCTCCTGACTTTTGTTTT‑CGATTA‑CAAAATAT‑AATCAAATTTTTTTTTTTTAAATATCGATATAACGAACACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAgg < 1:689159/142‑1 (MQ=255) ttCAGAATCTGCTTTGTCGATACCACTTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTTTTTTAAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGc < 2:3304885/148‑1 (MQ=255) tacAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGc < 2:2183411/146‑1 (MQ=255) tCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAAATATTTTTTTTTAAATATAGAGATAACGATAACAAAAACGACAATATGTAAAATATTAGAGGTGGGaaatggc > 2:2719528/1‑144 (MQ=255) cAGCATCTTCTTTGTCCACACCACGTATATTTTAATATCCTGTGTTTTTTTTT‑CTATTA‑AAAAATAT‑AATAAATTTTTTTTTTTTTAAATATCGATATCACGAACACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaa < 1:3056808/148‑1 (MQ=255) cgCATCTGCTTTGTCGATACCACTTACATTTACATACCCTGTCTTTTTTTTT‑CTTTTT‑AAAAATAT‑AATTAATTTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaa < 1:1904457/147‑1 (MQ=255) agaaTCTGTTTTGTCTAAACCACTTACATTTTAATATCCTTTCTTTTGTTTT‑ATATTA‑AAAAATAT‑AATTAAATTATTTTTTTTTAAATATCGACAAAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaa < 1:2540428/145‑1 (MQ=255) agaaTCTGCTTTGTCTATCCCAGCTACTTTTTAATATCCTGTGTTTTTTTTT‑TGTTTA‑AAAATTAT‑ATTCAATTTTTTTTTTTTTAAATATCGAGAAAACGTTCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaa < 1:885358/145‑1 (MQ=255) aTCTGCTTTGTCGAGACCACGTACATTTACATATCCTGTCTTTTGTTTT‑CTTTTA‑CAAAATAT‑AATCAATTTTTTTGTTTTTAAATATCGATATAACTAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaa < 1:417909/148‑1 (MQ=255) tattattttTCTATACAACCTAAATTTTAATATCCTGTGTTTTGTTTT‑ATATTT‑AAAAATAT‑AATTAAATTTTTTTTTTTAAAATATCTATAAAACTAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaaa < 1:1188866/143‑1 (MQ=255) cTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑GGATTT‑GAAAATAT‑AATTAAATTTTTTTTTTTTAAATATAGAGATAAAGATAACAAAAACTACAAAATTTAAATTTTTAGAGGGGTGAAATGGaaaaaaaa > 2:2859694/1‑147 (MQ=255) cTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑TGATTT‑AAAAAAAA‑AATTAAAATATATTTTTTTTAATATAGAGATAAACATAAAAAAAAAGACAAAATAAAAAATTTTGGAGGAGGGGAATGCaaaaaaaa > 2:1977942/1‑147 (MQ=255) cTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTT‑AGATTTGAAAAAAAA‑AATTAAATAATTT‑TTTTTTTATATAGATATAAAGATGACAAAAAAGAACAAATGTAAAATAATTGAGGCGTGTATAGCaaaaaaaaagg > 1:3229847/1‑144 (MQ=255) cTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑AGTTTT‑GAAAATAT‑AATTAAATTATTTTTTTTTTAAATTAGAGTTAAAGATCACAAAAAAGACAATATGTAAATTTTTGGGGGTGGGTAAGGCAAAAAAACGGc > 2:3140523/1‑148 (MQ=255) cTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑AGTTTT‑AAAAATAA‑AATGAAATTATTTTTTTTTATATATAGAGATAAAAATAACAAAAACGAAAATAAGAAAATTATAAGAGGAGTGAAAGGCaacaaaaagtc > 2:3139917/1‑144 (MQ=255) cGATACCACGTACATTTTCATATCCTGTCGTGTGTTTT‑GGATTT‑CAAAATAT‑AATTTAAATATTTTTTTTTATATATAGTGATAAAGAACACAAAAAAGACAAAATTTAAATTATTTGAGGTGGGTAAGGGCAAAAAACTGCCTGCCg > 2:2005964/1‑148 (MQ=255) gTACATTTTCTTATCCTGTCTTTTGTTTT‑CTATTT‑AAAATTAT‑AATGAATTTATTTTTTTTTAAATATCGATATAACGATAACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAg < 2:1257701/148‑1 (MQ=255) aCATTTTCATATCCTGTCGTGTGTTTT‑CGATTT‑CAAAATAT‑AATGTAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACCACACAAAGAAAAATATTCGAGGGGTGGAAGGCCAAAAAACGGCCTCCCGCGAgggcacac > 2:2959608/1‑143 (MQ=255) tttCATATCCTGTCGTTTGTTTT‑CTATTT‑AAAAATAT‑AATGAAATTATTTTTTTTTAAATATCTAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 2:2920657/148‑1 (MQ=255) tttCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 2:1271837/148‑1 (MQ=255) tttCATATCCTGTCGTGTGTTTT‑AGATTT‑CAAAAAAA‑AATGTAAATATTTGTTTTTAAATATCGAGATAAAGCAAACAAAAACGACAATAAGCAAATTATTGGTGGGGTGCAAGGCCAAAAAAACGCCTCCCGCTAGGGCACCCGGAg > 2:3198877/1‑148 (MQ=255) cagatCCTGTCGTTTGTTTT‑CTTTTT‑CAAAATAT‑AATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaa < 2:1222041/145‑1 (MQ=255) cATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaa < 2:1782950/148‑1 (MQ=255) gcgtGTCGTTTGTTTT‑CTTTTA‑AAAAATAT‑AATTAAATTATTTTTTTTTAAATATCGAGAAAACCATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 1:501896/145‑1 (MQ=255) ggtgttttttttt‑CTATTT‑AAAAATAT‑AATTAATTTATTTGTTTTTAAATATCTATAAAACGAACACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgcgc < 1:981953/143‑1 (MQ=255) gTCTTTTTTTTA‑AGATTT‑AAAAATAT‑AATGAAATTATTTTTTTTTAAATATCGAGATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGcgcg < 2:2301374/148‑1 (MQ=255) cttttgtttT‑CTATTA‑CAAAATAT‑AATTAAATTATTTGTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg < 1:1663524/146‑1 (MQ=255) gtttttttT‑CTATTT‑CAAAATAT‑AATTAAATTATTTTTTTTTAAATATCGATATAACTATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtgt < 2:616705/148‑1 (MQ=255) ttttttt‑CTATTA‑AAAAATAT‑AATCAAATTTTTTTTTTTTAAATAGCGACATACCCAACAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt < 1:677109/145‑1 (MQ=255) ttgtttT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 1:2381717/1‑148 (MQ=255) ttgtttT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:306142/1‑148 (MQ=255) tgtttT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt > 1:1032232/1‑148 (MQ=255) ttttt‑CTATTA‑AAAAATAT‑AATTAATTTTTTTTTTTTTAAATATCTATATAACTAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt < 1:969156/147‑1 (MQ=255) tttt‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa > 1:2279501/1‑148 (MQ=255) ttt‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 1:1263350/1‑148 (MQ=255) t‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGc > 2:1083107/1‑148 (MQ=255) gATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGGTTTTATGCCg > 2:2191739/1‑148 (MQ=255) aTTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg > 1:2071868/1‑148 (MQ=255) ttt‑CAAAATAT‑AATGAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa < 2:2725282/148‑1 (MQ=255) tt‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt > 1:1468992/1‑148 (MQ=255) t‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATg > 1:2678174/1‑148 (MQ=255) cAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGc > 1:1853537/1‑148 (MQ=255) | AGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTT‑CGATTT‑CAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGC > CP009273/2170570‑2170860 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |