| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,534,363 | C→A | 7.4% | G226C (GGC→TGC) | cysW ← | sulfate/thiosulfate ABC transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,534,363 | 0 | C | A | 7.4% | 596.3 / 17.0 | 161 | G226C (GGC→TGC) | cysW | sulfate/thiosulfate ABC transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (87/62); new base A (9/3); total (96/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 164 total aligned reads displayed.
CACTGCAACATACTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCAAGCAAAATCGCCGCTTCGTC > CP009273/2534218‑2534510 | cACTGCAACATACTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCgg < 1:2463258/148‑1 (MQ=255) aCTGCAACATACTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGa > 1:1765523/1‑148 (MQ=255) cTGCAACATACTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGaa > 2:678659/1‑148 (MQ=255) aCATACTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAaccac > 2:3063168/1‑148 (MQ=255) tACTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGa < 2:3004226/148‑1 (MQ=255) ttttAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACAcc > 2:923716/1‑148 (MQ=255) tAAATACCGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACcgcg < 2:2595769/148‑1 (MQ=255) aaCAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCaa > 2:1854409/1‑148 (MQ=255) cAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAAc > 1:2887518/1‑148 (MQ=255) ggTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCCGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCg > 2:113679/1‑148 (MQ=255) ggTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCg > 2:1139645/1‑148 (MQ=255) taaaaccGCCATCCGCGTTAACCGCGCCGCCGGGGTAACGCCGCCGACGTTTTTGTTGTCCTGCACCAGAAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCa < 1:3061156/142‑1 (MQ=255) gATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCa > 2:2505390/1‑148 (MQ=255) gATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCa > 2:2091862/1‑148 (MQ=255) gATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCa > 2:2091889/1‑148 (MQ=255) gATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCa > 2:2505386/1‑148 (MQ=255) gATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCa > 2:426969/1‑148 (MQ=255) aaTCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAAtt > 1:98829/1‑148 (MQ=255) tCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTgc > 1:1243655/1‑148 (MQ=255) tCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTgc > 2:3207201/1‑148 (MQ=255) tCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTgc > 1:1319754/1‑148 (MQ=255) cGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTgcg > 2:157475/1‑148 (MQ=255) gCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGAGGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTgcgc < 2:563384/148‑1 (MQ=255) aTCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCggg > 1:1310717/1‑148 (MQ=255) tCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGc > 1:2942216/1‑148 (MQ=255) tCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGc > 1:1925104/1‑148 (MQ=255) tCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGc > 2:671034/1‑148 (MQ=255) gCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGtt > 2:1580222/1‑148 (MQ=255) cGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTg > 1:1918776/1‑148 (MQ=255) aaCCGCGCCGCCGCGGTACAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCa < 2:1932423/148‑1 (MQ=255) aCAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCaa > 2:1957323/1‑148 (MQ=255) aCAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCaa > 2:3170904/1‑148 (MQ=255) cAGCTCCGCAGCGGTAAAGGAGACGACGGTGTTGTAGTACTGCTCCAGCAATTCAATCTGTAACGGAAGCGACAGGGTTTCGCCGCGAATCGAGCAGTAAACCACCGACACCTCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAac > 1:10619/1‑148 (MQ=255) cAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAac > 2:73671/1‑148 (MQ=255) cAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAac < 2:3248901/148‑1 (MQ=255) aGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAaca > 1:670933/1‑148 (MQ=255) aGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCGGTACCGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAaca < 1:2368655/148‑1 (MQ=255) cgccgcAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAAcacc < 2:984009/148‑1 (MQ=255) gccgcAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAAcacca < 1:1771700/148‑1 (MQ=255) cAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGcc > 1:760774/1‑148 (MQ=255) ggTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATaa < 2:2904728/148‑1 (MQ=255) aaaGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAagc > 2:1106890/1‑148 (MQ=255) aGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAagcag > 2:2120823/1‑148 (MQ=255) ggAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAagcagc < 1:3133597/148‑1 (MQ=255) gAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAgcg > 1:2917310/1‑148 (MQ=255) gAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAgcg > 1:622685/1‑148 (MQ=255) gCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTAAACACCACGCCATAAAGCAGCGcc < 2:1918776/148‑1 (MQ=255) ccGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGccc > 2:2786750/1‑148 (MQ=255) ccGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGccc > 2:2787463/1‑148 (MQ=255) tgttgtAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGAt > 2:2493514/1‑148 (MQ=255) gttgtAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATg < 1:896974/148‑1 (MQ=255) ttgtAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGt < 2:3232065/148‑1 (MQ=255) ttgtAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGt < 1:1382365/148‑1 (MQ=255) tgtAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGtt > 1:1620342/1‑148 (MQ=255) tgtAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGtt > 1:3257534/1‑148 (MQ=255) tgtAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGtt > 2:2562628/1‑148 (MQ=255) tgtAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGtt < 1:2642865/148‑1 (MQ=255) ttAGTCCTGCTCCATCAATTCAATGTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGACGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTc < 1:2556449/147‑1 (MQ=255) gtAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTc > 1:931495/1‑148 (MQ=255) tAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCg > 2:2892231/1‑148 (MQ=255) aGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCgg < 1:2481256/148‑1 (MQ=255) gTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGt < 1:2447692/148‑1 (MQ=255) gTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGt < 2:1243695/148‑1 (MQ=255) gTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGt < 2:1243655/148‑1 (MQ=255) tCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTa > 1:2162238/1‑148 (MQ=255) ccTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTaa > 2:1647906/1‑148 (MQ=255) ccTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCAGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTaa > 2:3258099/1‑148 (MQ=255) aGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCAGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGAcgc > 1:1094017/1‑148 (MQ=255) aGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCAGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGAcgc > 1:1094026/1‑148 (MQ=255) aTTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACg > 1:412515/1‑148 (MQ=255) cAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGaa < 1:1033122/148‑1 (MQ=255) tCTGTAACGGCAGCGACAGGGTTTCGCCGCGACTCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACAt < 2:2850940/148‑1 (MQ=255) tCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACAt > 1:167862/1‑148 (MQ=255) tCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCAGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACAt < 2:2874731/148‑1 (MQ=255) gaggTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACAt < 1:2844024/145‑1 (MQ=255) cTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATc < 2:2301580/148‑1 (MQ=255) cTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATc > 2:715309/1‑148 (MQ=255) cTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATc > 2:2650379/1‑148 (MQ=255) tGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCt > 1:2435486/1‑148 (MQ=255) gTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTg < 1:2296323/148‑1 (MQ=255) aaCGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGcc > 1:2813527/1‑148 (MQ=255) aaCGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGcc > 1:2813535/1‑148 (MQ=255) cAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCg > 2:2829749/1‑148 (MQ=255) cAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCg > 2:784836/1‑148 (MQ=255) cAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCg > 1:1280622/1‑148 (MQ=255) aGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCgg < 2:3257534/148‑1 (MQ=255) gACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGAcg < 1:3207201/148‑1 (MQ=255) aCAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGAcgc > 2:557686/1‑148 (MQ=255) cAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGAcgcg > 2:2711328/1‑148 (MQ=255) aGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACgcgc < 1:3046518/148‑1 (MQ=255) cgcgAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCAAGCAAAAt < 1:923716/148‑1 (MQ=255) cgAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCAAGCAAAATcg < 1:1531482/148‑1 (MQ=255) cgAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCAAGCAAAATcg > 1:1272427/1‑148 (MQ=255) aaTCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCACGCAAAATcgcc > 2:1914065/1‑148 (MQ=255) aTCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCAAGCAAAATcgccg > 1:1848552/1‑148 (MQ=255) cGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCAAGCAAAATCGCCGCt > 1:3193487/1‑148 (MQ=255) cGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCAAGCAAAATCGCCGCt < 1:986012/148‑1 (MQ=255) gAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCAAGCAAAATCGCCGCtt < 2:2404034/148‑1 (MQ=255) ccGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCAAGCAAAATCGCCGCTTCGt > 1:402503/1‑148 (MQ=255) ccGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCAAGCAAAATCGCCGCTTCGt < 2:1310717/148‑1 (MQ=255) | CACTGCAACATACTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGGTAATGTGACGCGACGGAACATCTGCCAGCCGGACGCGCCAAGCAAAATCGCCGCTTCGTC > CP009273/2534218‑2534510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |