| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,594,268 | C→T | 100% | intergenic (‑125/+120) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/inner membrane putative ABC superfamily transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,594,268 | 0 | C | T | 98.3% | 961.4 / 4.4 | 293 | intergenic (‑125/+120) | rpoH/ftsX | RNA polymerase, sigma 32 (sigma H) factor/inner membrane putative ABC superfamily transporter permease |
| Reads supporting (aligned to +/- strand): ref base C (4/1); new base T (156/132); total (160/133) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 293 total aligned reads displayed.
ACTTTGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAA > CP009273/3594123‑3594412 | ttGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCt > 2:186797/1‑148 (MQ=255) gCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTtg < 1:1181138/148‑1 (MQ=255) ttttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGa < 1:641263/148‑1 (MQ=255) ttttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGa > 2:3317620/1‑148 (MQ=255) tttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGaa > 1:2441063/1‑148 (MQ=255) tttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGaa > 2:2559719/1‑148 (MQ=255) tGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATa > 1:3029791/1‑148 (MQ=255) gtcagtcaTTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATaa < 2:678797/148‑1 (MQ=255) ttCAAATCCTCTCAATCGATATCTTCTGGAGCTTCAGTGGTATCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACAGTGATTTTATCCAAAAGTTCAATGTAAGCTTGTGAATAAATTACTca > 1:2283586/1‑148 (MQ=255) aaTCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACaaa > 2:1068930/1‑148 (MQ=255) aaTCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACaaa < 2:162013/148‑1 (MQ=255) ccTCTCACTCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAAtg < 2:2674557/148‑1 (MQ=255) ccTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAAtg > 1:523632/1‑148 (MQ=255) tctcAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAAtgtg < 2:753015/148‑1 (MQ=255) tctcAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAAtgtg > 2:1752324/1‑148 (MQ=255) ctcAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGa > 1:3153662/1‑148 (MQ=255) aaTCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACAt < 2:339204/148‑1 (MQ=255) aaTCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACAt < 2:48305/148‑1 (MQ=255) tCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGATCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATag < 2:1950233/148‑1 (MQ=255) tCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGATTTAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATag < 2:3192128/148‑1 (MQ=255) atatCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAgaga < 2:212236/148‑1 (MQ=255) tatCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGACTAAATTACGCACAAAATGTGACATAGAGAt > 2:181999/1‑148 (MQ=255) tatCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGAt < 1:965743/148‑1 (MQ=255) cttctGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGaa < 2:2546681/148‑1 (MQ=255) tGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATAc < 1:3247974/148‑1 (MQ=255) ggCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATAcc > 1:3126645/1‑148 (MQ=255) gcgcTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCg > 1:1261149/1‑148 (MQ=255) gcTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCggg < 2:3677489/148‑1 (MQ=255) cTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTCTCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGa < 1:2783218/148‑1 (MQ=255) tCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAag < 1:1693539/148‑1 (MQ=255) cAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAaga < 1:1219798/148‑1 (MQ=255) cAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAaga > 2:2622481/1‑148 (MQ=255) aGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAagag < 1:1455576/148‑1 (MQ=255) gTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAgaga < 2:529728/148‑1 (MQ=255) gCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACgg < 1:294749/148‑1 (MQ=255) gCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACgg < 2:277767/148‑1 (MQ=255) gCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACgg < 1:1421085/148‑1 (MQ=255) caacaaCTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACggg < 2:2869732/148‑1 (MQ=255) caacaaCTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACggg > 2:950726/1‑148 (MQ=255) aacTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGtct < 1:3059201/148‑1 (MQ=255) cTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTctct < 1:1053334/148‑1 (MQ=255) cTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTctct > 2:2216327/1‑148 (MQ=255) tgCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTc > 1:1785005/1‑148 (MQ=255) agagCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTg > 1:194306/1‑148 (MQ=255) gagCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGc > 1:56476/1‑148 (MQ=255) cTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTAc > 2:844896/1‑148 (MQ=255) tAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACgg > 2:3534598/1‑148 (MQ=255) aaGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGa < 1:3225789/148‑1 (MQ=255) agagCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGaa > 1:627717/1‑148 (MQ=255) agagCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGaa > 2:1574244/1‑148 (MQ=255) aaCGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCAt < 2:2995466/148‑1 (MQ=255) aaCGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCAt < 1:1797134/148‑1 (MQ=255) cGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTg > 2:735391/1‑148 (MQ=255) cGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTg < 2:1324911/148‑1 (MQ=255) gTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAgg > 2:1449369/1‑148 (MQ=255) aTCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGaa > 1:3371355/1‑148 (MQ=255) tCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGaaa > 1:3386239/1‑148 (MQ=255) cATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAag < 2:2473977/148‑1 (MQ=255) cATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAag > 1:2583644/1‑148 (MQ=255) cATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAag < 2:1610174/148‑1 (MQ=255) aTTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAaga < 1:1275714/148‑1 (MQ=255) tCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGt < 2:3368552/148‑1 (MQ=255) tCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGt < 1:2559460/148‑1 (MQ=255) tCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGt < 1:3319198/148‑1 (MQ=255) tCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGt < 1:1606340/148‑1 (MQ=255) cACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAATAGACAACGGGGTCTCTTTCACAGATAAGGAAACCAAATCAGGGAAAAAGta > 1:826559/1‑148 (MQ=255) cACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCAGCTACGGAACCCATTGCAGGGAAAGAGta > 2:2521310/1‑148 (MQ=255) cTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGtata < 2:1646138/148‑1 (MQ=255) ttATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGGATAACACg > 1:785420/1‑148 (MQ=255) tCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGACATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCtt < 2:1996405/148‑1 (MQ=255) tCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCtt > 1:2675593/1‑148 (MQ=255) tCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCtt < 2:3580566/148‑1 (MQ=255) cAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGTGTATAACACGCttt < 1:2880681/148‑1 (MQ=255) gACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGACCCCATTGCAGGGACAGAGTATAACACGCTTtta > 2:3088429/1‑148 (MQ=255) gACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATTACACGCTTtta > 1:2176655/1‑148 (MQ=255) gACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTtta < 2:2917273/148‑1 (MQ=255) aCCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTttat > 1:108128/1‑148 (MQ=255) aCCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTttat > 2:1779554/1‑148 (MQ=255) aCCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTttat < 2:2577947/148‑1 (MQ=255) ccGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTttatt < 1:1360195/148‑1 (MQ=255) cGTGATTTTATCCCCAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTttatta < 1:2169856/148‑1 (MQ=255) cGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTttatta < 1:2004401/148‑1 (MQ=255) taTTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACTCACAAAATGTGACATAGAGATGAATTACCGGGAAGAGACATCGGGGTCTCTTTCCCTGCTACGGAAACCATTGCAGGGAAAGAGTATAACACGCTTTTATTAGTc < 2:2283586/147‑1 (MQ=255) gATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACTCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTc < 1:1282858/148‑1 (MQ=255) ttATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGc < 2:2441055/148‑1 (MQ=255) tCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTa > 2:1414269/1‑148 (MQ=255) ccACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGGTACGGAACCCATTGCAGGGCAAGAGTATAACACGCTTTTATTATTAAGGCGTaa > 1:1628145/1‑148 (MQ=255) ccACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTaa > 1:1757053/1‑148 (MQ=255) ccACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTaa < 1:3527213/148‑1 (MQ=255) cacaAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTaaa < 1:186797/148‑1 (MQ=255) cacaAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTaaa > 1:3810301/1‑148 (MQ=255) caAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGt > 1:2068540/1‑148 (MQ=255) caAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGt > 1:2425023/1‑148 (MQ=255) caAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGt > 1:820241/1‑148 (MQ=255) aaGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTg < 2:1803656/148‑1 (MQ=255) aGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTgg < 2:3740625/148‑1 (MQ=255) ttCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCg > 2:474546/1‑148 (MQ=255) tCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGt > 2:3371917/1‑148 (MQ=255) tCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGt > 2:3786319/1‑148 (MQ=255) aTGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTaaa > 1:3675719/1‑148 (MQ=255) | ACTTTGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAA > CP009273/3594123‑3594412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |