| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,652,308 | G→T | 7.4% | intergenic (+55/‑284) | gadE → / → mdtE | gad regulon transcriptional activator/anaerobic multidrug efflux transporter, ArcA‑regulated |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,652,308 | 0 | G | T | 7.4% | 729.3 / 6.7 | 230 | intergenic (+55/‑284) | gadE/mdtE | gad regulon transcriptional activator/anaerobic multidrug efflux transporter, ArcA‑regulated |
| Reads supporting (aligned to +/- strand): ref base G (127/75); new base T (2/26); total (129/101) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 230 total aligned reads displayed.
CATTAAAGATTCAGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTGTCGTTGACC > CP009273/3652162‑3652452 | caTTAAAGATTCAGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGa < 1:233080/148‑1 (MQ=255)caTTAAAGATTCAGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGa < 2:3305506/148‑1 (MQ=255) aTTAAAGATTCAGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGAt < 2:1998870/148‑1 (MQ=255) ttAAAGATTCAGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGAtt > 1:2349145/1‑148 (MQ=255) tAAAGATTCAGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGAttt > 2:598498/1‑148 (MQ=255) gATTCAGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCAtt > 2:1961291/1‑148 (MQ=255) gATTCAGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCAtt > 2:1970100/1‑148 (MQ=255) gATTCAGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCAtt < 1:3192170/148‑1 (MQ=255) tCAGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTAcc < 2:2656540/148‑1 (MQ=255) cAGAAATTCAACATTATGTACCAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTAccc < 1:2538449/148‑1 (MQ=255) aGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTAcccc < 1:2689299/148‑1 (MQ=255) gAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTAccccc > 1:2871309/1‑148 (MQ=255) aaaTTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCg > 1:2384282/1‑148 (MQ=255) aTTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGt > 2:3431411/1‑148 (MQ=255) aTTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGt > 2:235678/1‑148 (MQ=255) aTTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGt > 1:2966881/1‑148 (MQ=255) aTTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGt > 2:1072198/1‑148 (MQ=255) tCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTTATTTCATTACCACCGGTGa > 1:2787763/1‑148 (MQ=255) cAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGAt < 1:458924/148‑1 (MQ=255) cAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGAt < 1:3267516/148‑1 (MQ=255) aaCATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGAtt < 2:1459175/148‑1 (MQ=255) aaCATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGAtt < 2:3359673/148‑1 (MQ=255) aCATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTa < 1:1892445/148‑1 (MQ=255) ttATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTa > 1:3399840/1‑148 (MQ=255) gTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAgg < 1:63316/148‑1 (MQ=255) gTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAgg > 1:151890/1‑148 (MQ=255) aGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAgg < 2:1842216/148‑1 (MQ=255) aGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAgg < 1:1055151/148‑1 (MQ=255) tGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTa > 1:1005214/1‑148 (MQ=255) gAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTaa > 2:3065696/1‑148 (MQ=255) aaaCTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTaaa < 1:3649752/148‑1 (MQ=255) aaaCTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTaaa < 1:3649877/148‑1 (MQ=255) aCTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAAc > 1:1710983/1‑148 (MQ=255) tAAGACGTATTAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGa < 2:3778502/148‑1 (MQ=255) aaGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGAc > 1:3027043/1‑148 (MQ=255) aGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACt > 1:3206802/1‑148 (MQ=255) gACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACtt > 1:697394/1‑148 (MQ=255) ttATGAGCGAAATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGTACATAAGCAAATTAAATTTATGGCTGGCATGCCGAGGGATGCAGATGCTTATTTCATTACCCCCGTTGATTACTAAAGGAGAGGCTAAAACGACTTTAt < 2:890292/147‑1 (MQ=255) gTATGTGCGTCATGGTCACCCTGGTTATCAAATATTTTTTTTAGTCTGGACATAAGCAACTGAATTTGATGGCTGGAATGACGAGGGATGCTGTGGCTGTTTTCATTACCCCGGGTTTTTACTAATGGAGAGGCTAAAACGACTTTAt < 2:1280926/148‑1 (MQ=255) tttGAGCGAAATCGTCACCGTGGTTATCACATCTTTTTTTTAGTCAGGACATAAGCAACTTAAATTGTTGGCTGGATTGACGTGGTATGCATATGCTGTTTTCTTTACCCCCGGTGATTAATAAAGGAGAGGCTAACACGACTTTAtt < 2:736766/146‑1 (MQ=255) tATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTAtt > 2:1191823/1‑148 (MQ=255) tATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTAtt > 2:2919555/1‑148 (MQ=255) aTGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTc > 1:1234383/1‑148 (MQ=255) gAGCGACATCGTCACCCGGGGTATCACTTCTTATTTTTAGTCAGGACATAAGCAACTGAATTTGATGGCTGGCTTGACGTGGGATGCAGATGCTTATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTccc < 2:1541849/148‑1 (MQ=255) cGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTg > 2:3690844/1‑148 (MQ=255) cGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTg > 1:2067448/1‑148 (MQ=255) aCATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGt > 1:1123415/1‑148 (MQ=255) tCGTCACCCTGGTTATCACATCTTATTTTTTGTCAGGACATAAGAAACTGAATTTGTTGGCTGGCATGACGTGGGATGCAGATGCTTTTTTCTTTACCCCCGGTGATTAATAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTAtg < 2:838265/148‑1 (MQ=255) cGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTAtgt > 1:3725799/1‑148 (MQ=255) ccccTGGTTATCACAACTTATTTTTAGTCAGTAAATAAGCAACTGATTTTTTTGGGTGGCATGACGAGGGATGCATTTGCTTTTTTCATTACCCCGGGTTTTTACTAAAGGAGCGGCTAAAACGACTTTATTCCCCTGGTATGTGTAt < 2:2297566/147‑1 (MQ=255) ggttATCACATCTTATTTTTAGTCAGCACATACCCAACTCAATTTGTTGGCGGGCATGACGTGGGATGCAGATGCTGATTTCATTCCCCCCGTTTATTAATAACGGAGCGGCTAAAACGACTTTATTCCCCTGGTATGTGTATccacc < 1:598498/145‑1 (MQ=255) tATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGt > 2:1512358/1‑148 (MQ=255) tATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGt > 1:3400640/1‑148 (MQ=255) cacaTCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGa > 2:2628716/1‑148 (MQ=255) cacaTCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGa > 2:3306136/1‑148 (MQ=255) cacaTCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGa > 1:1566752/1‑148 (MQ=255) cacaTCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGa > 1:1567214/1‑148 (MQ=255) tCTTATTTTTAGTCTGTACATACGCAACTGAAATTGATGGGTGGCATGACGAGGGATGCTGATGCTTTTTTAATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAAccc < 2:3693297/148‑1 (MQ=255) tCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAAccc > 2:3496076/1‑148 (MQ=255) cTTATTTTTAGTCAGGACATAAGAAACTCAAATTGTTGGCGGGCATGCCGAGGGATGCCGAGGCTGATTTCTTTACCCCCGGTTATTACTAAAGGAGAGGCTAACACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCt < 1:3799989/148‑1 (MQ=255) ttATTTTTAGTCAGAAAAAAAGCAACTTAATTTGATGGCTGCCATGACTTGGGATGAATATGCTGATTACATACCCCCCGGTTATTAAAAAAGGAGACCCAAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCtt < 1:396196/148‑1 (MQ=255) tATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTc > 2:952855/1‑148 (MQ=255) tCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGa > 1:47739/1‑148 (MQ=255) tCAGGACATAAGAAACTCAAATTGATGGCTGGCATGACGAGGTATGCTGTTGCTTATTTCATTACCCCCGGTTATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGa < 2:402421/148‑1 (MQ=255) aTAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTgg > 2:529362/1‑148 (MQ=255) tAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGc > 1:3797553/1‑148 (MQ=255) aaccAACTTAATTTGTTGGGTGGCTTGACGTGGGATGCATATGCTTATTTAATTCCCCCCGTTGATTAATAACGGAGCGGATAACACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCa < 1:2064014/145‑1 (MQ=255) aaGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCa > 1:2172425/1‑148 (MQ=255) aaGAAACTTAATTTGTTGGCTGGCATGACGAGGGAGGCATTTGCTTATTTAATTACCCCGGGTTATTACTAAAGCAGAGGCTAACACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCa < 1:2308904/148‑1 (MQ=255) gCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAgg > 2:1009497/1‑148 (MQ=255) cAACTGAAATTGATGGCTGGCATGACGTGGGATGCATATGCTGATTTCATTACCCCCGGTGATTACTAACGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGa < 2:2820587/148‑1 (MQ=255) cAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGa > 2:2101708/1‑148 (MQ=255) aaCTTAATTTGATGGCTGGAATGACGTGGTATGAAGAGGCTTATTTAATTACCCCGGGTTATTACTAAAGGAGAGCATAACACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGaa < 1:1811634/148‑1 (MQ=255) aaCTTAAATTGTTGGCTGGCATGACGAGGTTTGCTGTTGCTTTTTTAATCACCCCGGGTTTTAACTAACGGAGAGGATAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGaa < 1:3565279/148‑1 (MQ=255) aaCTGAAATTGATGGCTGGCATGACGTGGGATGCAGATGCTTATTTCATTACCCCCGGTGATTACTAACGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGaa < 1:1255406/148‑1 (MQ=255) aCTTAAATTGAGGGCGGGCATGACTAGGTATGCTGTTGCTGATTTCATTACCCCCGGTTATAACTAACGGAGAGGCAAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAAc < 1:1177710/148‑1 (MQ=255) tGAATTTGATGGCTGGCATGACGAGGGATGCAGATGCTGTTTTCATTACCCCCGGTGATTACTACAGGCGAGGCAAACACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTg < 2:2570882/148‑1 (MQ=255) taaaTTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGt < 2:180556/147‑1 (MQ=255) gAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTTATTTCTTTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGt < 2:911675/148‑1 (MQ=255) atttgttgGCTGGCATGACGAGGGATGCAGATGGTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAACACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTg < 2:2384282/146‑1 (MQ=255) ttGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGc > 1:410437/1‑148 (MQ=255) agggctggcATGACGAGGGATGCAGATGCTGTTTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGa < 2:2230191/146‑1 (MQ=255) gctggcATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACg > 2:3556905/1‑148 (MQ=255) cATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAAc < 2:3027043/148‑1 (MQ=255) cATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAAc > 2:524922/1‑148 (MQ=255) cATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAAc < 2:1119410/148‑1 (MQ=255) tGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACAt > 1:2147205/1‑148 (MQ=255) tGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCAAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACAt < 1:3118389/148‑1 (MQ=255) gACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACAtt > 2:2573618/1‑148 (MQ=255) aCGTGGGATGCAGTTGCTGATTTCATTACCCCCGGTGATTACTAACGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACAttt < 2:1412413/148‑1 (MQ=255) gaggCATATGCTTATTTCATTACCCCCGTTTATTACTAAAGGAGAGGATAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTg < 1:1358898/145‑1 (MQ=255) gaggCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAACACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTg < 2:2613238/145‑1 (MQ=255) gATGCAGATGCTGATTTCATTACCCCCGGTGATTACTACAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTg < 1:2635658/148‑1 (MQ=255) aTGCATTTGGTGATTTCATTACCCCCGGTTATTACTAAAGGAGAGGATAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTGt < 2:116738/148‑1 (MQ=255) aTGCAGTTGCTTTTTTATTTACCCCCGGTTATTAATAAAGGAGCGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAGCATTTTTTTTGt < 1:435396/148‑1 (MQ=255) gATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTGTCGTTg > 1:86348/1‑148 (MQ=255) gATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTGTCGTTg > 1:1852957/1‑148 (MQ=255) aTGCTGATTTCATTACCCCCGGTTATTACTAAAGGAGCGGATAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTGTCGTTGa < 2:2871309/148‑1 (MQ=255) gCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTGTCGTTGAcc > 1:2909120/1‑148 (MQ=255) gCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTGTCGTTGAcc < 2:1723406/148‑1 (MQ=255) | CATTAAAGATTCAGAAATTCAACATTATGTACAAGCTGAAACTAAGACGTATGAGCGACATCGTCACCCTGGGTATCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTGTCGTTGACC > CP009273/3652162‑3652452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |