| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 295,695 | T→G | 14.0% | E317D (GAA→GAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 295,695 | 0 | T | G | 14.0% | 353.0 / 17.3 | 190 | E317D (GAA→GAC) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| Reads supporting (aligned to +/- strand): ref base T (49/110); new base G (29/2); total (78/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.37e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 204 total aligned reads displayed.
TCGATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCATC > CP009273/295549‑295842 | tcgATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGttt > 2:82497/1‑148 (MQ=255)tcgATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGttt > 1:313779/1‑148 (MQ=255) tCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCgg > 2:651271/1‑148 (MQ=255) tCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCgg > 2:3116943/1‑148 (MQ=255) tCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCgg > 2:2951660/1‑148 (MQ=255) tCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCgg > 2:2671797/1‑148 (MQ=255) tCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCgg > 2:1043188/1‑148 (MQ=255) cgcgATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGc < 2:2051127/148‑1 (MQ=255) cgcgATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGc < 1:3709567/148‑1 (MQ=255) cgcgATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGc > 1:3605807/1‑148 (MQ=255) gcgcCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCggg < 1:2746844/148‑1 (MQ=255) cgcCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGc < 1:2951660/148‑1 (MQ=255) cgcCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGc < 1:1043188/148‑1 (MQ=255) ccATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTACGGCGTGCCG‑CCGGGccg > 1:1903647/1‑146 (MQ=255) cATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCGGCGGGGCC‑CCCGGCacg > 1:3223735/1‑146 (MQ=255) aTCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCGGCGGGGCG‑CCGGGCCGGt > 1:1397539/1‑148 (MQ=255) tCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCGGCGGGCCGCCCGGGCGGGt > 1:1715094/1‑148 (MQ=255) gACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGTGCCG‑CCGGGCAGGTTTcc > 2:344919/1‑148 (MQ=255) aCCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTGCGGCGTGCCG‑CCGGGCCGGGTTCCa > 1:3103339/1‑148 (MQ=255) aCCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTACGGCGGGCCG‑CCGGGCCGGTTTccc > 1:3102482/1‑147 (MQ=255) ccGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAg > 2:3594482/1‑148 (MQ=255) gggggCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGAc < 2:13882/148‑1 (MQ=255) gggCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTACAGACCa > 2:147461/1‑148 (MQ=255) cTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCt < 2:2419422/148‑1 (MQ=255) ttCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCtt < 2:2656810/148‑1 (MQ=255) cGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTc < 2:1005644/148‑1 (MQ=255) cGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTc < 1:459087/148‑1 (MQ=255) cGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTc < 1:497347/148‑1 (MQ=255) gCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCa < 2:1830969/148‑1 (MQ=255) ccGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCAt < 1:382813/148‑1 (MQ=255) cGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCAtg < 1:3487371/148‑1 (MQ=255) ggCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCAtgtg < 2:1654768/148‑1 (MQ=255) cgcacgcaTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCTGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTgag < 2:1183202/148‑1 (MQ=255) caTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCg < 2:885071/148‑1 (MQ=255) tGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCGGCGGGGCG‑CCGGGGCGGTTTGCAGACCCCCGTTACTGTGAGGTATCggg > 1:1493588/1‑147 (MQ=255) cGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGAt < 1:3260156/148‑1 (MQ=255) ggtCCCTTCCGGCAAATCACGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGAtt < 1:2878478/146‑1 (MQ=255) ttCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGAttt < 1:2792883/148‑1 (MQ=255) tCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCGGCGGGCCC‑CCCGGCCGGTTTACAGACCCCCTTTAAAGTTAGATAGCGGTGAtttt > 1:1982967/1‑148 (MQ=255) ccGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGct < 1:645509/148‑1 (MQ=255) ccGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGct < 1:1499118/148‑1 (MQ=255) cGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGctc < 2:3042870/148‑1 (MQ=255) aTCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGGGCCG‑CCCGGGCGGTTTACAGTCCACCGTTCATGTGTGATAGCGGTGATTTTACCGCGCGGGTCg > 2:1387044/1‑148 (MQ=255) aTCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTGAGGTGAGATAGCGGTGATTTTACCGCTCTGGTCg > 2:1124412/1‑148 (MQ=255) aTCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGGGCCG‑CCGGGCAGGGTTCCAGACCAGCATTCATGTGAGATAGCGGTGATTTTCCCGCTCGGGTCg > 2:2138155/1‑148 (MQ=255) cAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGc < 2:2082217/148‑1 (MQ=255) gCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTACGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGGTTTTCCCGCTCTGGTCGGCAcc > 2:2964753/1‑148 (MQ=255) cGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCg < 2:1194378/148‑1 (MQ=255) tGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGAt < 2:287778/148‑1 (MQ=255) gCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATAc < 1:2818357/148‑1 (MQ=255) gCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATAc < 1:903737/148‑1 (MQ=255) gAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGGGCCG‑CCCGGCAGGTTTCCATACCAGCTTTCAAGTGACATAGAGGTGAGATTCCCGCTCTGGTCTGCAACGATACGc > 2:2780805/1‑148 (MQ=255) aGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTGCGGCGTGCCG‑CCGGGCAGGTTTACAGAACAGCTTTCATGTGAGATACCGGTGATTTTACCCCTCAGGGCGGCACCGATAAGCa > 2:1731941/1‑148 (MQ=255) aGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCCGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGcc > 2:2206482/1‑147 (MQ=255) aGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGGTTTTCCCGCTCTGGTCGGCACCGATACGCa > 2:291698/1‑148 (MQ=255) aGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGTGCCG‑CCCGGCAGGTTTCCAGACCACCATTCATGTGTGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCa > 2:3624137/1‑148 (MQ=255) aGCCGCAGACCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTACGGCGTGCCG‑CCGGGCAGGTTTACAGACCACCTTTCATGTGAGATAGCGGGGAATTTAACCCACTGGTCGGCACCCATAAGCa > 2:1504225/1‑148 (MQ=255) gCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCaa < 2:2255831/148‑1 (MQ=255) gCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCaa < 2:2526652/148‑1 (MQ=255) gCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCaa < 1:3420216/148‑1 (MQ=255) gCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTACCGCGGGCCG‑CCGGGCCCGTTTCCAGACCAGCTTTCATGTGAGATATCGGTGATTTTCCCGCTCTGGTCGGCACCCAGACGCaa > 2:1073512/1‑148 (MQ=255) gCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTg < 2:376230/148‑1 (MQ=255) cAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGc < 2:714551/148‑1 (MQ=255) ggCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCCGGTTTCCAGACCAGCTTTCCTGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTg > 2:2244148/1‑148 (MQ=255) gCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCGGCGGGCCG‑CCCGGCCGGGTTGCAGACCACCATTCATGTGTGATAGCGGGGTTTTTTCCGCCGGGGTCGGGACCCCAAAGCAAGTGCTGa > 1:2135589/1‑148 (MQ=255) ggTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAgg < 2:3249791/148‑1 (MQ=255) gTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAggg < 2:3605580/148‑1 (MQ=255) gTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAggg < 2:3493422/148‑1 (MQ=255) tATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTACAGACCAGCGTTCATGTGTGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCACTTGCGGAAGGGt > 2:2357428/1‑148 (MQ=255) tGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTgg < 1:1988182/148‑1 (MQ=255) tGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCGGCGGGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGTGATAGCGGGGTTTTTACCGCGCTGGGCGGCACCGATACGCAACTGGGGAAGGGTgg > 2:1708422/1‑148 (MQ=255) tGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGTGCCG‑CCGGGCAGGGTTACAGACCAGCGTTCATGGGAGATAGCGGTGTTTTTCCCGCTCGGGTCGGCACCGATAAGCACGTGGGGAAGGGTgg > 2:3602510/1‑148 (MQ=255) ttCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTGCGGCGGGCCG‑CCGGGCAGGTTTCCAGACCCCCGTTGATGTGAGGTAGCGGTGATTTTACCGCTCTGGTCGGCACCCCGAAGCCAGTGCGGAAGGGTgggggggg > 2:1075285/1‑147 (MQ=255) ttCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCCCGTTTCCAGAACAGCATTCATGTGAGATATCGGTGATTTTACCGCGCTGGTCGGCACCCATAAGCAATTGCGGAAGGGTgggggggc > 2:2661779/1‑148 (MQ=255) ttCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCCTGCCG‑CCCGGCAGGTTTCCAGACCAGCCTTCATTTTAGATAGCGGGGATTTTGCCGCTAGGGTCGGCACCGATACGCAAGTGCTGAAGGGTggcggggc > 2:1510857/1‑148 (MQ=255) tCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGGGCCG‑CCCGGCAGGTTTCCAGACCAGCTTTCATGTGTGTTAGCGGGGATTTTACCGCGCTGGTCGGCACCGATACGCAACTGCGGAAGGGTggcgggggg > 2:1428299/1‑146 (MQ=255) gCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgtgg < 2:337414/148‑1 (MQ=255) cGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgtggt < 2:1374406/148‑1 (MQ=255) cGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgtggt < 1:1576352/148‑1 (MQ=255) cGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgtggt < 2:3271932/148‑1 (MQ=255) cGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgtggt < 1:2025543/148‑1 (MQ=255) cGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgtggt < 1:82957/148‑1 (MQ=255) tAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGgtgt < 1:246569/148‑1 (MQ=255) agagTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGtt < 1:3254532/148‑1 (MQ=255) tCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGaa < 2:3103339/148‑1 (MQ=255) tCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGaa < 2:3102482/148‑1 (MQ=255) cGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAAt < 1:2687304/148‑1 (MQ=255) cGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAAt < 2:3533715/148‑1 (MQ=255) tttGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATaga < 2:1561892/148‑1 (MQ=255) tttGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATaga < 2:1561946/148‑1 (MQ=255) tttGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATaga < 2:1232713/148‑1 (MQ=255) gCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAggg < 2:3743833/148‑1 (MQ=255) ccgccgTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCgggg < 2:1493588/148‑1 (MQ=255) cgccgTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCggggg < 1:2328147/148‑1 (MQ=255) ccgTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTACCCCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGGGGTGTTATTGGGAATAGAGGGGCGGGGGAg > 1:2509130/1‑148 (MQ=255) cgTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGc < 2:3415503/148‑1 (MQ=255) gTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCa > 1:1406522/1‑148 (MQ=255) tttCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCAt > 2:2317423/1‑148 (MQ=255) tttCCGGCGTGCCG‑ACGGGCAGGTTTCCAGACCAGCATTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACAGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGTGGCGGGGGAGCAt > 2:3235675/1‑148 (MQ=255) ttCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCATc > 2:1267726/1‑148 (MQ=255) | TCGATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCATC > CP009273/295549‑295842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |