| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 955,568 | A→T | 100% | intergenic (+17/‑152) | aroA → / → ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 955,568 | 0 | A | T | 98.6% | 691.7 / ‑0.1 | 211 | intergenic (+17/‑152) | aroA/ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
| Reads supporting (aligned to +/- strand): ref base A (0/3); new base T (88/120); total (88/123) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 216 total aligned reads displayed.
CGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGA > CP009273/955423‑955714 | gATGGCGATGTGTTTCTCGCTGGTGGCGTTGTAAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACACCGGGCaattaata > 2:3105298/1‑148 (MQ=255) aTGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAg > 1:3005994/1‑148 (MQ=255) aTGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAg > 1:1801165/1‑148 (MQ=255) tGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGc > 2:450588/1‑148 (MQ=255) ggCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGcc > 2:2513309/1‑148 (MQ=255) cGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCaa < 1:3471653/148‑1 (MQ=255) aTGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCCGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAt > 1:1297134/1‑148 (MQ=255) aTGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAt > 1:1247373/1‑148 (MQ=255) aTGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAt > 1:1369698/1‑148 (MQ=255) tgtgTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtc > 2:1257143/1‑148 (MQ=255) tgtgTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtc > 2:212440/1‑148 (MQ=255) tgtgTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtc > 1:2307153/1‑148 (MQ=255) tgtgTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtc < 1:1161618/148‑1 (MQ=255) gtTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtcttt < 2:1556737/148‑1 (MQ=255) gtTTCTCGCTGGTGGCGGTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtcttt < 2:2574664/148‑1 (MQ=255) ttCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtctttct > 2:2172905/1‑148 (MQ=255) ttCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtctttct < 1:2039512/148‑1 (MQ=255) ctcGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATctttcttt < 2:1216561/148‑1 (MQ=255) ctcGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATctttcttt < 2:806333/148‑1 (MQ=255) tcGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTa > 2:1539231/1‑148 (MQ=255) ggtggCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCaaa < 2:1039226/148‑1 (MQ=255) gtggCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCaaaa < 2:3742143/148‑1 (MQ=255) gtggCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCaaaa < 2:3332875/148‑1 (MQ=255) gtggCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCaaaa < 1:3055498/148‑1 (MQ=255) aGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACAt > 1:186661/1‑148 (MQ=255) gATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACAtt > 2:547062/1‑148 (MQ=255) aTACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTg > 1:1570035/1‑148 (MQ=255) acacCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTc > 1:2883717/1‑148 (MQ=255) acCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCgg > 2:666166/1‑148 (MQ=255) cAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCg < 2:1588395/148‑1 (MQ=255) cAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCg < 2:2307640/148‑1 (MQ=255) cAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCg < 2:932076/148‑1 (MQ=255) cAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCg < 2:273351/148‑1 (MQ=255) cAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCg < 2:3220386/148‑1 (MQ=255) gTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑tt < 1:3105018/148‑1 (MQ=255) tGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑ttt > 1:2675575/1‑148 (MQ=255) gACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑tttt > 2:51768/1‑148 (MQ=255) aCGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑ttttt < 1:3698750/148‑1 (MQ=255) aCGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑ttttt > 1:2103184/1‑148 (MQ=255) gATTCTTGATCCCAAATGACCGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGATTGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑ttttttt < 2:2465313/148‑1 (MQ=255) aTTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑tttttttt < 2:1640728/148‑1 (MQ=255) ttCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCCGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑tttttttta > 2:3576225/1‑147 (MQ=255) cTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGTGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCgg < 1:3358725/148‑1 (MQ=255) tGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGAc < 2:3183760/148‑1 (MQ=255) aTCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCt < 1:448681/148‑1 (MQ=255) cccAAATGCACGGCCAAAACAGTTCCGGTTTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAACTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTtg < 2:3699685/148‑1 (MQ=255) ccAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTtgt < 1:1966883/148‑1 (MQ=255) ccAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTtgt < 1:1714411/148‑1 (MQ=255) cAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTtgtg > 2:1263188/1‑148 (MQ=255) aaaTGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGa < 2:2334555/148‑1 (MQ=255) aaaTGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGa > 1:584218/1‑148 (MQ=255) cGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑ttt > 2:144157/1‑148 (MQ=255) gCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTGGGACCATGTGTGTGA‑TTTTg > 1:1062992/1‑148 (MQ=255) gCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTATGACCGTGTTAGTCA‑ttttt > 1:1453371/1‑147 (MQ=255) ccAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGa < 1:1257152/148‑1 (MQ=255) cAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGAt < 2:575931/148‑1 (MQ=255) aaaaCATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGAtt < 2:470968/148‑1 (MQ=255) aaaCATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACTTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCATGTGTGTCA‑TTTttatta > 2:2297524/1‑148 (MQ=255) aaCATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTGGGACCTTGTGTGTCA‑TTTTGTTTaa > 1:1809069/1‑148 (MQ=255) aaCATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTaa < 1:1539231/148‑1 (MQ=255) aCATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAAt < 2:1171880/148‑1 (MQ=255) aCATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAAt < 2:1172165/148‑1 (MQ=255) cATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATg < 2:3446568/148‑1 (MQ=255) aTTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATgg > 2:2406728/1‑148 (MQ=255) ttCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTTGGACCATGTGTGTGA‑TTTTGTTTAATTGtt > 1:398486/1‑147 (MQ=255) tattTCGAGCAGCTGGCGCGGATTAGCCCGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TGTTTTTTTGGTCCGTGTGGGTGC‑TTTTGATTTTTGGTAGCGtgggg > 1:1091131/1‑144 (MQ=255) tattTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATTGTAGCGTCGCt > 2:2750536/1‑148 (MQ=255) tattTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCTTGTGAGTCA‑TTTTTATTAATGGTAGCGTCGCt > 2:1746618/1‑148 (MQ=255) ttCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTTAATGAACAACGGGCAATTAATAGCCAAATATTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGt < 1:167519/148‑1 (MQ=255) tCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATACCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGt < 1:3608497/148‑1 (MQ=255) cagcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGt < 2:1490243/148‑1 (MQ=255) cagcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGt < 2:3391999/148‑1 (MQ=255) agcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTa < 2:2074029/148‑1 (MQ=255) gcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTaa > 2:2354527/1‑148 (MQ=255) gcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCGTGTCaagggaa > 1:3488188/1‑143 (MQ=255) gcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCATGTGGGTCA‑TTTTGTTTAATGGGTGGGGCGCGTGTGAATGtta > 1:2360570/1‑146 (MQ=255) cTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAg < 2:38669/148‑1 (MQ=255) gcgcGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttg < 2:2228947/148‑1 (MQ=255) cgcgGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttg < 1:519728/148‑1 (MQ=255) aTTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATa < 1:3579556/148‑1 (MQ=255) aTTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGNCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATa < 1:1933784/148‑1 (MQ=255) ttAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCATTTGAGTCA‑TTTTGATTAATGGTATCGTCGCGTGTGAAAGTAActtttttaaaa > 2:388196/1‑143 (MQ=255) tAGCCAGTCAGCCAGAATGAACAACGGTCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTTTCGGGG‑TTTTTTTTCGTACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACa < 2:3685806/148‑1 (MQ=255) tAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCGTGTGAGTCA‑TTTTTATTAATGGTAGCGTCGCTTGTGAAAGTAAGtttttgtttaa > 1:943526/1‑143 (MQ=255) cAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACataat < 2:1517271/148‑1 (MQ=255) aGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATTGAATTTGTTGATACataata > 2:3797247/1‑148 (MQ=255) aGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACataata < 2:726523/148‑1 (MQ=255) aGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTGTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACataata < 1:2520975/148‑1 (MQ=255) gaatgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTGGGACCATGTGAGTCA‑TTTTTATTAATTGTAGCGTCGCGTGTGAATTTTAGTTTTTGATAAAAAAAATTTttatat > 1:319612/1‑148 (MQ=255) aatgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTGGGACCTTTTGTGTGA‑TTTTTATTAATTGTATCGTCGCTTGTGAAAGTAAGTTTTTTTTAAATAATATTTatatatt > 1:2503393/1‑147 (MQ=255) aatgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTTAATGTAAGTTGTTGATACATAATATTTATATATg < 1:2844889/148‑1 (MQ=255) aatgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCGTTTGAGTAA‑TTTTGTTTAATTGTAGCGTCGGTTTGGAATGGAAGTTTTTGATAAAAAAAAATTATATATg > 2:1710166/1‑148 (MQ=255) atgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGTGTCA‑TTTTTATTAATGGTAGCGTCGCGTGTGCATGTAATTTTTTGTTAAATAATATTTttatatta > 2:79122/1‑146 (MQ=255) atgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGa < 1:666166/148‑1 (MQ=255) tgaaCAACGGGCTTTTAATAGACATATCTTTCTTTATAAAAACGTCGGCATTTTGTCGTCT‑TTTTTTTTCGGAACTTGTTTTTCA‑TTTTTATTTATGGTAGCTTAGCTTGTAATTGTAAGTTGTTGATACATAATATTTATATTTGAt < 2:1930075/148‑1 (MQ=255) tgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAt < 1:1473435/148‑1 (MQ=255) aacaacGGGCAATTAATAGCCAAATCTTTCTTTATCAACACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTa < 1:478645/148‑1 (MQ=255) aacaacGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTTATTAATGGTAGCGTCGCTTTTGAAAGTAAGTTGTTTATACATAATATTTATATATGATTa > 2:731345/1‑148 (MQ=255) acGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTGGGACCTTGTGTGTCA‑TTTTGATTAATTGTAGCGTCGCGTGTGAAATTAAGTTTTTTTTAAATAATATTTTTTTAttatttataa > 1:2192094/1‑146 (MQ=255) taaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTTTGTTTCA‑TTTTGATTAATGGTAGCGTCGCTTTTAAATGTAAGCTGTTGATACATAAAATTTATTTATGTTTAATCAACGgatga > 2:929957/1‑148 (MQ=255) | CGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCA‑TTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGA > CP009273/955423‑955714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |