Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,209,662 G→T 11.9% intergenic (‑147/+58) bluR ← / ← bluF repressor of blue light‑responsive genes/anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,209,6620GT11.9% 805.2 / 55.7 249intergenic (‑147/+58)bluR/bluFrepressor of blue light‑responsive genes/anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP
Reads supporting (aligned to +/- strand):  ref base G (111/108);  new base T (12/18);  total (123/126)
Fisher's exact test for biased strand distribution p-value = 3.32e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.52e-01

Only 100 of 260 total aligned reads displayed.

CAATTCCTCCTTGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACATCTCAATTCCTGC  >  CP009273/1209515‑1209806
                                                                                                                                                   |                                                                                                                                                
     cctcctTGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAaacgtaacg                                                                                                                                             >  2:2803582/1‑148 (MQ=255)
      ctcctTGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAaacgtaacgt                                                                                                                                            <  1:142398/148‑1 (MQ=255)
      ctcctTGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAaacgtaacgt                                                                                                                                            >  2:2972804/1‑148 (MQ=255)
       tcctTGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAacgtaacgta                                                                                                                                           <  2:2763237/148‑1 (MQ=255)
       tcctTGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAacgtaacgta                                                                                                                                           >  2:2007960/1‑148 (MQ=255)
         ctTGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTAtt                                                                                                                                         <  2:1141075/148‑1 (MQ=255)
          ttGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTc                                                                                                                                        <  1:2999471/148‑1 (MQ=255)
          ttGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATATTTAATGTGGATTAAATTTAAACTTAACGTATTc                                                                                                                                        >  1:2030053/1‑148 (MQ=255)
           tGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCa                                                                                                                                       >  1:399103/1‑148 (MQ=255)
           tGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCa                                                                                                                                       >  1:3327513/1‑148 (MQ=255)
            gCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCAt                                                                                                                                      <  1:2436458/148‑1 (MQ=255)
               gTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCAtttt                                                                                                                                   >  2:3056232/1‑148 (MQ=255)
                     aaTCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACTTAACGTATTCATTTTCACgat                                                                                                                             >  2:1099790/1‑148 (MQ=255)
                      aTCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACgatg                                                                                                                            <  2:1637071/148‑1 (MQ=255)
                       tctcCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACgatga                                                                                                                           >  2:842719/1‑148 (MQ=255)
                        ctcCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACgatgat                                                                                                                          >  1:80112/1‑148 (MQ=255)
                        ctcCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACgatgat                                                                                                                          <  1:3646058/148‑1 (MQ=255)
                        ctcCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACgatgat                                                                                                                          >  1:1594209/1‑148 (MQ=255)
                           cGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTa                                                                                                                       <  2:3146187/148‑1 (MQ=255)
                                 cTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGaaa                                                                                                                 <  1:2236158/148‑1 (MQ=255)
                                  tGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAAt                                                                                                                >  1:45280/1‑148 (MQ=255)
                                   gTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATc                                                                                                               >  1:228757/1‑148 (MQ=255)
                                   gTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATc                                                                                                               <  2:2913851/148‑1 (MQ=255)
                                     acacGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCAt                                                                                                             >  1:946656/1‑148 (MQ=255)
                                        cGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCAtgtg                                                                                                          >  1:2912716/1‑148 (MQ=255)
                                         gACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGa                                                                                                         <  2:1243465/148‑1 (MQ=255)
                                           cccAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGaaa                                                                                                       >  1:3316086/1‑148 (MQ=255)
                                              aataatACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGaa                                                                                                    >  2:3109755/1‑148 (MQ=255)
                                              aataatACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGaa                                                                                                    <  2:609997/148‑1 (MQ=255)
                                              aataatACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGaa                                                                                                    >  1:520779/1‑148 (MQ=255)
                                                taataCTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAAtg                                                                                                  <  1:2194733/148‑1 (MQ=255)
                                                taataCTTTGTACAAGATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAAtg                                                                                                  <  1:2423887/148‑1 (MQ=255)
                                                   taCTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGc                                                                                               <  1:2058256/148‑1 (MQ=255)
                                                    aCTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCt                                                                                              >  1:1505706/1‑148 (MQ=255)
                                                     cTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTg                                                                                             >  2:3651793/1‑148 (MQ=255)
                                                     cTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTg                                                                                             >  1:1754852/1‑148 (MQ=255)
                                                        tGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACTTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGaaa                                                                                          <  2:1496300/148‑1 (MQ=255)
                                                            cactataCGCTCAAAGTGTACACAGTATAAATAAGATTTCAGCTAAAGTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAatta                                                                                      <  2:3551576/145‑1 (MQ=255)
                                                            cAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAatta                                                                                      <  2:1361840/148‑1 (MQ=255)
                                                              atatACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAattatt                                                                                    <  2:3178914/148‑1 (MQ=255)
                                                              atatACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAattatt                                                                                    <  1:1047887/148‑1 (MQ=255)
                                                               tataCGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTAttt                                                                                   <  2:1507902/148‑1 (MQ=255)
                                                               tataCGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTAttt                                                                                   >  2:2107851/1‑148 (MQ=255)
                                                                ataCGCTAAAATTGTACAAAGTATAAATCAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTAtttt                                                                                  >  2:1978453/1‑148 (MQ=255)
                                                                ataCGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTAtttt                                                                                  >  2:821824/1‑148 (MQ=255)
                                                                    gCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTtct                                                                              <  1:1317689/148‑1 (MQ=255)
                                                                     cTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTtctc                                                                             <  2:1690572/148‑1 (MQ=255)
                                                                     cTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTtctc                                                                             <  2:1205951/148‑1 (MQ=255)
                                                                      tAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTctct                                                                            >  2:32849/1‑148 (MQ=255)
                                                                         aaTTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACTTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGc                                                                         <  1:2838936/148‑1 (MQ=255)
                                                                          aTTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGcc                                                                        >  2:553538/1‑148 (MQ=255)
                                                                            tGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCAc                                                                      >  2:2232030/1‑148 (MQ=255)
                                                                                cAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACTTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTa                                                                  <  1:1677191/148‑1 (MQ=255)
                                                                                cAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTa                                                                  <  1:3447095/148‑1 (MQ=255)
                                                                                   aGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATgg                                                               >  2:2170528/1‑148 (MQ=255)
                                                                                    gTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGa                                                              <  1:1384314/148‑1 (MQ=255)
                                                                                     tataAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGaa                                                             <  2:1754852/148‑1 (MQ=255)
                                                                                      ataaataaGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAg                                                            >  2:3356016/1‑148 (MQ=255)
                                                                                        aaataaGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACTTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAggg                                                          >  1:127534/1‑148 (MQ=255)
                                                                                         aataaGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGa                                                         <  1:848481/148‑1 (MQ=255)
                                                                                          ataaGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGAt                                                        >  2:1668015/1‑148 (MQ=255)
                                                                                          ataaGATTTCAGCTAAATTGGAAGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGAt                                                        <  1:368751/148‑1 (MQ=255)
                                                                                              gATTTCAGCTAACTTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCa                                                    <  1:2641106/148‑1 (MQ=255)
                                                                                                tttCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCAtt                                                  <  1:3089722/148‑1 (MQ=255)
                                                                                                  tCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCa                                                >  2:2878266/1‑148 (MQ=255)
                                                                                                      cTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAAttt                                            >  2:3790559/1‑148 (MQ=255)
                                                                                                        aaaTTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAAtttag                                          >  1:1182643/1‑148 (MQ=255)
                                                                                                         aaTTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAAtttagc                                         <  2:747000/148‑1 (MQ=255)
                                                                                                          aTTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAAtttagct                                        <  1:3256735/148‑1 (MQ=255)
                                                                                                          aTTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAAtttagct                                        <  2:2400472/148‑1 (MQ=255)
                                                                                                                tGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCa                                  <  1:171531/148‑1 (MQ=255)
                                                                                                                 gAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCaa                                 >  2:3724038/1‑148 (MQ=255)
                                                                                                                  aaaCATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCaaa                                <  2:1778796/148‑1 (MQ=255)
                                                                                                                  aaaCATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCaaa                                <  2:3316086/148‑1 (MQ=255)
                                                                                                                   aaCATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAAc                               <  2:946656/148‑1 (MQ=255)
                                                                                                                    aCATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACa                              >  1:3510506/1‑148 (MQ=255)
                                                                                                                      attattTTTAATGTGGATTAAATTTAAACTTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGa                            >  1:1356116/1‑148 (MQ=255)
                                                                                                                      attattTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGa                            <  1:2461634/148‑1 (MQ=255)
                                                                                                                       ttattTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCACTTTAGCTTTAGCAAACAGAt                           >  2:2582341/1‑148 (MQ=255)
                                                                                                                       ttattTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGAt                           >  1:3028444/1‑148 (MQ=255)
                                                                                                                        tattTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGTAAATTATTTTTTGTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGAtc                          >  2:161097/1‑148 (MQ=255)
                                                                                                                        tattTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGAtc                          >  1:1443278/1‑148 (MQ=255)
                                                                                                                        tattTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGAtc                          >  1:3157280/1‑148 (MQ=255)
                                                                                                                          tttttAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGAtctc                        >  2:881672/1‑148 (MQ=255)
                                                                                                                           ttttAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTcc                       <  1:3144948/148‑1 (MQ=255)
                                                                                                                            tttCATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTccc                      >  2:2438465/1‑148 (MQ=255)
                                                                                                                                aTGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGaa                  <  2:228757/148‑1 (MQ=255)
                                                                                                                                 tgtgGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGaaa                 >  1:2801893/1‑148 (MQ=255)
                                                                                                                                  gtgGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAAc                >  1:668428/1‑148 (MQ=255)
                                                                                                                                     gATTAAATTTAAACTTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACAtc             <  1:620448/148‑1 (MQ=255)
                                                                                                                                     gATTAAATTTAAACTTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACAtc             >  1:2556445/1‑148 (MQ=255)
                                                                                                                                     gATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACAtc             >  2:1405813/1‑148 (MQ=255)
                                                                                                                                     gATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACAtc             >  2:2124979/1‑148 (MQ=255)
                                                                                                                                      aTTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACAtct            <  2:1873461/148‑1 (MQ=255)
                                                                                                                                        tAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACATCTCa          >  2:3530942/1‑148 (MQ=255)
                                                                                                                                        tAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACATCTCa          >  1:1043517/1‑148 (MQ=255)
                                                                                                                                         aaaTTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACATCTCaa         <  1:3477262/148‑1 (MQ=255)
                                                                                                                                          aaTTTAAACTTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACATCTCAAt        >  1:2771274/1‑148 (MQ=255)
                                                                                                                                            tttAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACATCTCAATTc      <  2:45280/148‑1 (MQ=255)
                                                                                                                                                aacgtaacgtATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACATCTCAATTCCTGc  <  1:1139543/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
CAATTCCTCCTTGCGGTCACAAATCTCCGTCGCCTGTACACGACCCAATAATACTTTGTACAATATACGCTAAAATTGTACAAAGTATAAATAAGATTTCAGCTAAATTGGATGAAACATTATTTTTAATGTGGATTAAATTTAAACGTAACGTATTCATTTTCACGATGATTTACTGAAATCATGTGAAAGAATGTGCTGAAAATTATTTTTTCTCTGGCCACGCTATGGAAGGGATACCATTCAATTTAGCTTTAGCAAACAGATCTCCCTGAAACATCTCAATTCCTGC  >  CP009273/1209515‑1209806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: