| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,386,008 | G→T | 100% | Q35K (CAG→AAG) | ycjY ← | S9 homolog non‑peptidase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,386,008 | 0 | G | T | 98.4% | 738.5 / 6.6 | 245 | coding (103/921 nt) | ycjY | S9 homolog non‑peptidase family protein |
| Reads supporting (aligned to +/- strand): ref base G (2/0); major base T (94/145); minor base . (4/0); total (100/145) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.55e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 251 total aligned reads displayed.
AACTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTG > CP009273/1385863‑1386152 | aaCTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTAt < 1:356687/148‑1 (MQ=255) aCTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTtata < 1:1205567/148‑1 (MQ=255) aCTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTtata > 2:3476018/1‑148 (MQ=255) aCTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTtata < 1:2796829/148‑1 (MQ=255) cTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATAc < 1:3584411/148‑1 (MQ=255) cTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑CATTGCCTtataa > 2:2700399/1‑147 (MQ=255) gACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AAATGCCTTATACTg > 2:1073527/1‑148 (MQ=255) aCGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGa < 2:2632305/148‑1 (MQ=255) aCGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGa < 2:3732848/148‑1 (MQ=255) cgcgGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTGTTTTAAGCCCCCCCCCGGGGGTGTTAACA‑C‑AAATTCCGGATACTGAc > 1:1020498/1‑148 (MQ=255) gCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGt < 1:1212895/148‑1 (MQ=255) gCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGt < 2:2781053/148‑1 (MQ=255) gCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGt < 2:3170689/148‑1 (MQ=255) cgccgcCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTGTTTAAAGCCCCCACCAGGGTGAGATAACA‑C‑AAATTCCATATAATGACGGGGTtc > 2:336188/1‑148 (MQ=255) gccgccACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTtca < 2:2423816/148‑1 (MQ=255) gccgccACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTtca < 2:1646296/148‑1 (MQ=255) gccgccACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTtca < 1:2210806/148‑1 (MQ=255) ccACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCaa < 1:2446629/148‑1 (MQ=255) ccACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCaa < 2:756368/148‑1 (MQ=255) cTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTGTTTAAAGCCCCCCCCAGGGGGAGATAAAA‑C‑AAATTGCGGATACTGAAGGGTTTAATaaaaat > 1:2309048/1‑146 (MQ=255) tttCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTGTTTAAAGCCCCCACCAGGGTGAGATAAAA‑C‑AATTGCCTTATACAGACGGGTTTCATCAAAatt > 1:1900326/1‑148 (MQ=255) ttCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTCTTTAAAGCCCCCAACAGGGTGAGATAACA‑C‑AAATGCCATATACAGACGGGTTTCATCAAAtttt > 2:767591/1‑148 (MQ=255) cACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTgg < 2:498328/148‑1 (MQ=255) cACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTgg < 2:218133/148‑1 (MQ=255) cACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTgg < 2:2146528/148‑1 (MQ=255) aCCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGa < 1:103143/148‑1 (MQ=255) aCCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGa < 1:3504249/148‑1 (MQ=255) tGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTTTTTAACGCCCCCCCCGGGGTGGGCTAAAA‑C‑AAATTCCTTATAATGACGGGGTTGATCAAATTTTTGTgggc > 1:3387511/1‑147 (MQ=255) tGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTGTTTTAACCCCCCCCCAGGGTGAGATAACA‑C‑AAATGCCGTATAAAGCCGGGTTTAAACAAAATTTTGTGGGa > 1:216081/1‑148 (MQ=255) gATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGaa < 1:137627/148‑1 (MQ=255) aaGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTGTTTAACGCCCCCACCTGGGTGTGATAACA‑C‑AATTGCCGTATACTGACGGGGTTCATCAAATTTTTGTGGGAAATa > 2:860569/1‑148 (MQ=255) gATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGa < 2:2988935/148‑1 (MQ=255) aTGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTGTTTTAAGCCCCCCCCGGGGGGAGATTAAA‑C‑AAGTTCCTTATAATGTCGGGTTTGATGAAATTTTGTGGGGGAatatat > 1:423254/1‑148 (MQ=255) gCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCa < 2:2818551/148‑1 (MQ=255) gTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACt < 2:1439778/148‑1 (MQ=255) tCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCAGGGTGAGATAACC‑C‑AATTGCCTTATACGGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTg > 2:533195/1‑148 (MQ=255) aaGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGa < 2:240368/148‑1 (MQ=255) aaGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTTTTGGTTAAAGCCCCCCCCCGGGGGGGTTAACACC‑AATTGCGT‑ATAAAGAACGGTTTGATAAAAAATTTGGGGGGAATAGATCaaagcaca > 1:1770283/1‑141 (MQ=255) aTAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAag < 1:1776100/148‑1 (MQ=255) tAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACCCCCCCACCGGGGTGAGATAACA‑C‑AAATTCCGTATAATGACGGGGTTCATCAAATTTTGGAGGGAAAAACATCACAGCAGAAAAaga > 2:635415/1‑148 (MQ=255) aGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAagag < 1:1662544/148‑1 (MQ=255) aGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAagag < 2:2227815/148‑1 (MQ=255) aGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAagag < 2:300067/148‑1 (MQ=255) aGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTGTTTAAACCCCCCCCCCGGGGGGGCTAACA‑CAAATTGCGT‑ATAATTACGGGTTTGATCAAAATTTTGAGGGACATAGATCAATGCAGACAAagac > 1:2054059/1‑147 (MQ=255) aGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTCTTTAACGCCCCCACCGGGGTGTGATAACA‑C‑AATTTCCGTATACAGACGGGTTTAATCAAATTTTTGTGGGAAAAAGATCACAGCAGACAAagag > 1:2540588/1‑148 (MQ=255) gTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAgaga < 1:1884751/148‑1 (MQ=255) gTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAgaga < 2:403061/148‑1 (MQ=255) gTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAgaga < 2:1633740/148‑1 (MQ=255) aCAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATgg < 1:885831/148‑1 (MQ=255) aCAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATgg < 2:1241996/148‑1 (MQ=255) aCAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATgg < 2:1914121/148‑1 (MQ=255) aCAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATgg < 1:1359863/148‑1 (MQ=255) aCAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATgg < 1:3390465/148‑1 (MQ=255) aTCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTgg < 2:3782598/148‑1 (MQ=255) cTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGatta < 1:3185571/148‑1 (MQ=255) ttttCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTTTTGTTTAAAGCCCCCACCAGGGGGATATAAAA‑C‑AATTTCCTTATAAAGACGGGTTTAATAAAAAATTTGTGGGAAATAAATAACAGGAGACAAAGACAATGTTTGatttt > 1:3108671/1‑146 (MQ=255) cGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAAAGCCCCCCCCGGGGTGAGATAACA‑C‑AATTGCCGTATAATGAAGGGTGTCATCAAAATTTTGAGGGAAATAGATCAATGCAGACCAAGAGATGGTGGGAGTATTGCTg > 2:2690301/1‑148 (MQ=255) gCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTGTTTAACCCCCCCACCGGGGTGAGATAAAA‑C‑AAATGCCGTATACTGACGGGTTTCATCAAATTGTGGTGGGAAATAGATCACTGCAGACAAAGAGATGGGTTGATTATTGCTGt > 2:3374034/1‑148 (MQ=255) cAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTGTTTAACGCCCCCACCAGGGGGAGATAACA‑A‑AATTGCCTTATAAAGACGGGTTTCATCAAAATTTGGAGGGAAATAGATCACAGCAGACAAAGAGATGGTTGGATTATTGCGGTTa > 2:1597839/1‑148 (MQ=255) tttttGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCAGGGTGAGATAACA‑C‑AATTGCCTTATACAGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACCAAGAGATGGTTGGATTATTGCTGTTAGTGa > 2:2529709/1‑148 (MQ=255) tttttGGCATAGGTTCCGGCCGTTTGTTCTTTAACCCCCCCACCAGGGTGAGATAAAA‑A‑AAATGCCTTATAATGACGGGTTTCATAAAATTTTTGAGGGAAATATATCACAGCAGACAAAGAGATGGTTGGATTATTTCTTTTattta > 2:833292/1‑144 (MQ=255) ttttGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGaa < 1:630557/148‑1 (MQ=255) ttGGCATAGGTTCCGGCCGTTTGTTCTTTAACCCCCCCACCAGGGTGAGATAAAA‑C‑AAATGCCTTATAATGAAGGGTTTCATAAAATATTTGAGGGAAATAGATCACAGCAGACAAATAGATGGTTGGATTATTTCTGTTAGTGAAGc > 2:1530056/1‑148 (MQ=255) ggCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTg < 2:1421600/148‑1 (MQ=255) cATAGGTTCCGGCCGTTTGTTCTTTAAAGCCCCCACCTGGGTGAGATAACA‑C‑AAATTCCTTATAAAGACGGGTTTCATCAAATTTTTGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGGTAGTGAAGCttaa > 2:2528186/1‑145 (MQ=255) aTAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACt < 2:274910/148‑1 (MQ=255) aTAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACt < 2:2757348/148‑1 (MQ=255) aTAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACt < 2:2173873/148‑1 (MQ=255) tCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTttatta < 2:943694/148‑1 (MQ=255) tCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTttatta < 1:1577628/148‑1 (MQ=255) tCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTttatta < 1:3476018/148‑1 (MQ=255) ggCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATtc < 1:780559/148‑1 (MQ=255) ggCCGATTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATtc < 2:3415662/148‑1 (MQ=255) cGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATtcatc > 1:2293437/1‑148 (MQ=255) tttGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTcatcat > 1:2999435/1‑148 (MQ=255) ttGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCAtt > 1:915544/1‑148 (MQ=255) tCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGt > 2:2039056/1‑148 (MQ=255) ttAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTcc > 1:2685037/1‑148 (MQ=255) ttAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTcc > 1:669163/1‑148 (MQ=255) cGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCAt < 1:2815339/148‑1 (MQ=255) cccACCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCAGTCCGTTCCTCATGGAg < 2:216284/148‑1 (MQ=255) aCCTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTg < 2:3068935/148‑1 (MQ=255) ccTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGt < 2:2205495/148‑1 (MQ=255) ccTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGt > 2:1123064/1‑148 (MQ=255) ccTGGGTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGt > 2:2931415/1‑148 (MQ=255) gggTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCgg < 1:336188/148‑1 (MQ=255) gggTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCgg > 2:1262901/1‑148 (MQ=255) gggTGAGATAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCgg < 2:3537356/148‑1 (MQ=255) gagaTAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCg < 2:3231218/148‑1 (MQ=255) aTAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGttt < 1:3719047/148‑1 (MQ=255) aTAACA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGttt > 2:1696123/1‑148 (MQ=255) aaCA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTa < 2:1411561/148‑1 (MQ=255) aaCA‑C‑AATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTa < 1:860569/148‑1 (MQ=255) aca‑c‑AATTGCCTTAAACTGACGGGATTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGAGTATTGCTGTTAGTGAAGCTGACTTGATTATTCATCATTCCGTTCCTCATGGAGGTGTCGGTTCGGTTTaa > 2:1800245/1‑148 (MQ=255) ttGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACGATATAATACATCATTCCGTTCCTCCCCGAGTTGTCGGTTCGTTTTAACGGTTg < 1:3639454/148‑1 (MQ=255) tGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTgg > 1:3786594/1‑148 (MQ=255) tGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTgg < 1:3258135/148‑1 (MQ=255) tGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTgg > 1:3053449/1‑148 (MQ=255) gCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGt < 1:3066985/148‑1 (MQ=255) ccTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTg < 1:29036/148‑1 (MQ=255) | AACTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGATAACA‑C‑AATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTG > CP009273/1385863‑1386152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |