| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,461,041 | A→T | 93.8% | pseudogene (1393/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,461,041 | 0 | A | T | 93.8% | 486.2 / 17.0 | 158 | pseudogene (1393/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base A (5/5); new base T (87/61); total (92/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 158 total aligned reads displayed.
GATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGA > CP009273/1460900‑1461185 | gatgaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGTATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCg > 2:3341343/1‑148 (MQ=255)gatgaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCg > 2:42772/1‑148 (MQ=255) aCGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCaa < 2:2405913/148‑1 (MQ=255) ggCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCCACGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACg < 2:3454875/148‑1 (MQ=255) gCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACgg < 2:1494377/148‑1 (MQ=255) gCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACgg < 2:2498048/148‑1 (MQ=255) gCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACgg < 2:3355938/148‑1 (MQ=255) acaacaacGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGa > 1:1956404/1‑148 (MQ=255) caacaacGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGAt > 2:2859452/1‑148 (MQ=255) caacGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAAc > 2:860606/1‑148 (MQ=255) acGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACaa > 1:104631/1‑148 (MQ=255) acGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACaa > 2:14349/1‑148 (MQ=255) acGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACaa > 1:1554358/1‑148 (MQ=255) cGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAg > 1:2189702/1‑148 (MQ=255) cGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAg < 1:1178529/148‑1 (MQ=255) cAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGc > 2:1845414/1‑148 (MQ=255) ccaccGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCAt > 1:593511/1‑148 (MQ=255) ccaccGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCAt > 1:1231825/1‑148 (MQ=255) caccGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATg < 2:1842374/148‑1 (MQ=255) accGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGa < 1:1954951/148‑1 (MQ=255) accGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGa > 1:1291521/1‑148 (MQ=255) ccGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGAc > 1:2081573/1‑148 (MQ=255) ccGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGAc > 1:3678064/1‑148 (MQ=255) ttGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGt < 1:305618/148‑1 (MQ=255) aaGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATc < 2:1592334/148‑1 (MQ=255) ggATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCg > 1:1775646/1‑148 (MQ=255) ggATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCg > 1:258138/1‑148 (MQ=255) gATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCgg > 1:2286622/1‑148 (MQ=255) gATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCgg < 1:3022856/148‑1 (MQ=255) aTTCCACCGGTACGGAAATTGCTGGCTATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGa > 1:1975133/1‑148 (MQ=255) aTTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGa < 1:1952659/148‑1 (MQ=255) aTTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGa > 1:2866723/1‑148 (MQ=255) tCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGt < 2:1366981/148‑1 (MQ=255) cACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTcc < 2:3178067/148‑1 (MQ=255) ccGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCAt > 2:1637079/1‑148 (MQ=255) tACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGt > 1:80923/1‑148 (MQ=255) aCGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTa < 1:371287/148‑1 (MQ=255) aCGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTa > 1:1022640/1‑148 (MQ=255) aCGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTa > 1:3214042/1‑148 (MQ=255) gAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGACGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATcc > 2:914185/1‑148 (MQ=255) aTTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGa > 2:2292490/1‑148 (MQ=255) aTTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGa < 2:3687716/148‑1 (MQ=255) tGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGAtt > 1:1209242/1‑148 (MQ=255) cTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGa < 2:299379/148‑1 (MQ=255) tGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGAc < 2:1786970/148‑1 (MQ=255) ggCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACg > 2:1715276/1‑148 (MQ=255) gtaaTAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAg > 2:352248/3‑125 (MQ=11) gtaaTAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAg < 1:352248/123‑1 (MQ=11) gtaaTAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAg > 2:1730457/3‑125 (MQ=11) aTAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGa < 2:1221711/148‑1 (MQ=255) ggAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGc > 1:1395723/1‑148 (MQ=38) ggAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGc > 1:1168626/1‑148 (MQ=38) gAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGcc < 2:2189702/148‑1 (MQ=38) aaagTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTAt < 2:1954388/122‑1 (MQ=1) gATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTc > 2:3644120/1‑148 (MQ=38) gATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTc > 2:1121817/1‑148 (MQ=38) aTTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCa > 2:3471605/1‑148 (MQ=38) ttCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCaa < 2:2777447/148‑1 (MQ=255) cAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATa < 1:1171315/148‑1 (MQ=255) cAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAGCTCCGGCGACAGCTCATCGGTGGATAACATCGGGACCATGACCGTAACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATa < 1:887814/148‑1 (MQ=14) gACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACg > 1:3110802/1‑148 (MQ=255) aCGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGa < 1:1414099/148‑1 (MQ=255) cGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGaa < 1:2015898/148‑1 (MQ=255) cGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGaa < 1:1734826/148‑1 (MQ=255) gCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAgg < 2:3068501/148‑1 (MQ=255) tCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCgag > 2:217898/1‑148 (MQ=255) ggATGTCAGCGGCGGCGGTCACGGTCTTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCCTCGTCAATAACGAAGGCGAGAGc > 2:2651183/1‑148 (MQ=255) ggATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGc > 1:2344652/1‑148 (MQ=255) ggATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGc < 1:3708476/148‑1 (MQ=255) ggATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGc < 1:3529294/148‑1 (MQ=255) gATGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCa < 2:3749257/148‑1 (MQ=255) aTGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCAc < 1:277265/148‑1 (MQ=255) aTGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCAc > 2:2734459/1‑148 (MQ=255) tGTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACt < 2:2041597/148‑1 (MQ=255) gtccccggcggccgACACGGGTGTGAAATGACCGGCCTCAGCGCCACGTCGGCTCACACGGGCACACTGACCGTCCCCGCTCCGCTGTCGACCGCTCTCCAGCTTGACGGCGACCAGGCGATCGTCAAGAACGAAGGCGAGAGCACTa < 2:2549107/143‑1 (MQ=255) gTCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTa < 2:2549428/148‑1 (MQ=255) tCAGCGGCGGCGGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTAt > 1:1553572/1‑148 (MQ=255) cAGCGGCGGCGGTCACTGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAGGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATc < 2:3380885/148‑1 (MQ=255) cAGCGGCGGCGGTCACGGTAGTGATATCTCCGGCGACAGCGCAACGGTGGATCACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATc < 2:3380408/148‑1 (MQ=255) gcggcggcgGTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCAc > 1:2886963/1‑148 (MQ=255) cggcggcggTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATTGTCAATAACGAAGGCGAGAGCACTATCAcc < 2:764265/148‑1 (MQ=255) cggcggcggTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCAcc > 1:1697466/1‑148 (MQ=255) cggcggcggTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCAcc > 2:450219/1‑148 (MQ=255) gcggcggTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCaa < 1:2183824/148‑1 (MQ=255) gcggcggTCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCaa < 1:772757/148‑1 (MQ=255) tCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATggcggc > 1:282203/1‑148 (MQ=255) tCACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATggcggc > 2:2146048/1‑148 (MQ=255) cACGGTATTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggca > 1:2362244/1‑148 (MQ=255) aTTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccggca > 2:3188444/1‑148 (MQ=255) aTTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccggca > 1:2753102/1‑148 (MQ=255) aTTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccggca > 1:1823888/1‑148 (MQ=255) aTTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccggca > 1:386275/1‑148 (MQ=255) aTTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccggca > 1:386259/1‑148 (MQ=255) aTTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccggca > 2:2068030/1‑148 (MQ=255) aTTGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccggca > 1:1824895/1‑148 (MQ=255) ttGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccggcac > 1:2524494/1‑148 (MQ=255) tGATATCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTAACACCAATGGCGGCACCGGCACt > 1:1278864/1‑148 (MQ=255) tGATATCTCCGGAGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAACGATCAGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAAAAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACt > 1:3182844/1‑148 (MQ=17) tatCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAg < 1:931316/148‑1 (MQ=255) atCTCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGa > 1:2242312/1‑148 (MQ=255) | GATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGA > CP009273/1460900‑1461185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |