| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,480,656 | C→A | 20.1% | I1113I (ATC→ATA) | hrpA → | putative ATP‑dependent helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,480,656 | 0 | C | A | 20.1% | 467.1 / 73.6 | 178 | I1113I (ATC→ATA) | hrpA | putative ATP‑dependent helicase |
| Reads supporting (aligned to +/- strand): ref base C (86/56); new base A (20/16); total (106/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 | |||||||||||
Only 100 of 187 total aligned reads displayed.
GGCAATGTGGAACGGTCTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTACGGC > CP009273/1480509‑1480802 | ggCAATGTGGAACGGTCTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTAtc > 2:3497238/1‑148 (MQ=255) gCAATGTGGAACGGTCTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTAtct > 1:2846931/1‑148 (MQ=255) cAATGTGGAACGGTCTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTAtctc > 1:2518321/1‑148 (MQ=255) aTGTGGAACGGTCTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCt > 1:2448133/1‑148 (MQ=255) aTGTGGAACGGTCTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCt < 2:1541635/148‑1 (MQ=255) aaCGGTCTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGgtg < 2:2216832/148‑1 (MQ=255) ggTCTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTgg < 2:190844/148‑1 (MQ=255) ggTCTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTgg < 1:2959479/148‑1 (MQ=255) gTCTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGa < 1:394512/148‑1 (MQ=255) cTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATa > 1:2475842/1‑148 (MQ=255) ttCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATaa < 1:1832241/148‑1 (MQ=255) ttCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATaa < 1:2878167/148‑1 (MQ=255) ttCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATaa < 1:518772/148‑1 (MQ=255) cGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAAt < 1:3517271/148‑1 (MQ=255) cGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAAt < 1:3517161/148‑1 (MQ=255) cGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGa < 1:3481361/148‑1 (MQ=255) tACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGa < 2:1838275/148‑1 (MQ=255) tgctgctgAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGc > 1:1182427/1‑148 (MQ=255) ctgctgAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCa < 2:829004/148‑1 (MQ=255) gctgAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAAt < 2:142397/148‑1 (MQ=255) ctgAATATTCCATCGCCAATCAAATATTTACATGAAAATTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAAtg < 2:3271532/148‑1 (MQ=255) ctgAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAAtg < 2:3271509/148‑1 (MQ=255) tgAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAAtgg > 1:881439/1‑148 (MQ=255) gAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAAtggt > 1:2964136/1‑148 (MQ=255) gAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAAtggt > 1:3327206/1‑148 (MQ=255) aaTATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAATCCAAGCTGTGACTGTACTTTAACCCGTATGGCAAAGATCTGGAGCTGATCGACGACTTTATCTACTGCGGTTTGGATAAATTGATCTACGCCAAtggtg > 2:2201158/1‑148 (MQ=255) aaTATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAAtgttg > 1:3008813/1‑148 (MQ=255) atatTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAAtggtgg > 2:2903630/1‑148 (MQ=255) atatTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAAtggtgg < 1:3172707/148‑1 (MQ=255) atTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGcc > 1:267983/1‑148 (MQ=255) tCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCg > 2:651506/1‑148 (MQ=255) ccATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCgg > 2:663698/1‑148 (MQ=255) aTCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTc > 1:2409839/1‑148 (MQ=255) aTCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTc > 1:2409783/1‑148 (MQ=255) tCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCt > 2:1215152/1‑148 (MQ=255) gCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTgg < 1:3581097/148‑1 (MQ=255) aaTCAAATATTTACATGAACAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACg < 1:73017/148‑1 (MQ=255) aaTCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATAGATAGACGCCAATGGTGGCCCGGTCTGGACg > 1:3331099/1‑148 (MQ=255) aTCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACgg > 1:3164409/1‑148 (MQ=255) cAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGgaa > 1:2666249/1‑148 (MQ=255) tatTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGaagaag > 1:938004/1‑148 (MQ=255) tttACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGTCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGc < 1:3110041/148‑1 (MQ=255) tttACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGc < 2:1923470/148‑1 (MQ=255) ttACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCt > 1:1746108/1‑148 (MQ=255) tACATGAAAAGTTACCGAACAAAGCCACGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCtt < 2:3534157/148‑1 (MQ=255) aTGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTtgc > 2:1698587/1‑148 (MQ=255) gAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTtgctg < 2:3297466/148‑1 (MQ=255) gAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTtgctg < 2:3297484/148‑1 (MQ=255) aaaaGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTtgctgc > 1:1645296/1‑148 (MQ=255) aaaaGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTtgctgc > 1:503668/1‑148 (MQ=255) aaaaGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTtgctgc > 2:3762280/1‑148 (MQ=255) gTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTgctgcgctg > 2:1326380/1‑148 (MQ=255) ttACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTgctgcgctgc > 1:1556614/1‑148 (MQ=255) aCCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCAt > 2:1029342/1‑148 (MQ=255) aCAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCTGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGaaaa > 1:1922163/1‑148 (MQ=255) aCAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGaaaa > 2:3024165/1‑148 (MQ=255) cAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGaaaaa > 2:1363112/1‑148 (MQ=255) aaaGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAACAAg > 2:3720710/1‑148 (MQ=255) aaGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAgt > 2:3164017/1‑148 (MQ=255) ccAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCtt < 1:2148969/124‑1 (MQ=255) ccAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAgtgcg > 2:3369649/1‑148 (MQ=255) tGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGa > 1:1254840/1‑148 (MQ=255) cTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGa < 1:3724738/148‑1 (MQ=255) tACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACg > 2:2410288/1‑148 (MQ=255) ttAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGacac > 2:2041440/1‑148 (MQ=255) aaCCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACgg < 2:3674608/148‑1 (MQ=255) cccGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACggtg > 1:3282808/1‑148 (MQ=255) cccGTATGGCAAAGTGCTGGAGATTATCGACGACTGTATCTCCTGCGGTGTGTATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACggtg < 1:1666074/148‑1 (MQ=255) ccGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACggtgg > 2:429631/1‑148 (MQ=255) aTGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGa < 1:864784/148‑1 (MQ=255) tgtcacaGTGCTGGAGCTGATCGAGGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCTAACTGAACGACACGGTGGTGGat < 1:595319/142‑1 (MQ=255) tGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGAAGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGat < 1:3272384/148‑1 (MQ=255) ggCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGata > 1:680157/1‑148 (MQ=255) ggCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGata > 1:2689518/1‑148 (MQ=255) gCAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGatat < 1:242993/148‑1 (MQ=255) cAAAGTGCTGGAGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATAtt < 1:1363112/148‑1 (MQ=255) aaGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGc > 2:633031/1‑148 (MQ=255) aGTGCTGGAGCAGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACTCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATAGCg > 2:2470969/1‑148 (MQ=255) gTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGa > 2:1084342/1‑148 (MQ=255) gTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGa < 1:663698/148‑1 (MQ=255) gTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGa > 2:409542/1‑148 (MQ=255) tGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCa < 1:1967271/148‑1 (MQ=255) aGCTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGt < 2:1338072/148‑1 (MQ=255) gCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTc < 2:2488654/148‑1 (MQ=255) cTGATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCg > 1:3311664/1‑148 (MQ=255) gATCGACGACTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAg > 1:511309/1‑148 (MQ=255) aTCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGc > 1:441164/1‑148 (MQ=255) cgacgaCTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCaa < 1:1637169/148‑1 (MQ=255) gacgacTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCaaa < 2:1595860/148‑1 (MQ=255) cgacTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATc > 1:996766/1‑148 (MQ=255) gacTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATcc < 1:1252176/148‑1 (MQ=255) acTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCt > 2:2605896/1‑148 (MQ=255) cTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCtt > 1:3138972/1‑148 (MQ=255) cTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCtt > 2:896050/1‑148 (MQ=255) cTGTATATCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCtt < 2:1965149/148‑1 (MQ=255) aTCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTACgg > 1:3707549/1‑148 (MQ=255) aTCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTACgg > 1:1381123/1‑148 (MQ=255) tctcCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTACGGc > 2:1506991/1‑148 (MQ=255) tctcCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTACGGc > 2:439148/1‑148 (MQ=255) tctcCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTACGGc > 1:3748561/1‑148 (MQ=255) | GGCAATGTGGAACGGTCTTCGCCGTCTACTGCTGCTGAATATTCCATCGCCAATCAAATATTTACATGAAAAGTTACCGAACAAAGCCAAGCTGGGACTGTACTTTAACCCGTATGGCAAAGTGCTGGAGCTGATCGACGACTGTATCTCCTGCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTACGGC > CP009273/1480509‑1480802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |