| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,590,878 | A→T | 100% | pseudogene (1367/5323 nt) | yneO ← | pseudogene, AidA homolog |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,590,878 | 0 | A | T | 98.8% | 803.3 / ‑0.5 | 255 | pseudogene (1367/5323 nt) | yneO | pseudogene, AidA homolog |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base T (123/128); total (124/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.19e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 261 total aligned reads displayed.
ATTAACTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCTCCCACA > CP009273/1590733‑1591022 | ttAACTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCa > 1:597380/1‑148 (MQ=255) aCTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGt > 2:614885/1‑148 (MQ=255) tCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAg < 1:1664550/148‑1 (MQ=255) ccccTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAgt < 1:1343473/148‑1 (MQ=255) aCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCg > 2:2923162/1‑148 (MQ=255) ggAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATa < 1:2684758/148‑1 (MQ=255) gAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATAc > 1:3694964/1‑148 (MQ=255) aGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATAcc > 1:2152960/1‑148 (MQ=255) gCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgc > 1:3562789/1‑148 (MQ=255) gCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgc < 1:1393604/148‑1 (MQ=255) cATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgct > 1:1569593/1‑148 (MQ=255) cATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgct > 1:668629/1‑148 (MQ=255) aTTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgctt > 2:931926/1‑148 (MQ=255) ttCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgcttgc < 1:1243496/148‑1 (MQ=255) tcctccGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgcttgct < 1:1074997/148‑1 (MQ=255) tcctccGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgcttgct < 1:2534649/148‑1 (MQ=255) ctccGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCttt < 1:2629071/148‑1 (MQ=255) ctccGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCttt < 1:2801960/148‑1 (MQ=255) tccGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTa < 2:1696499/148‑1 (MQ=255) tccGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTa > 2:3157553/1‑148 (MQ=255) tAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGcc > 2:3534203/1‑148 (MQ=255) tAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGcc < 2:2741164/148‑1 (MQ=255) tAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGcc < 1:1413843/148‑1 (MQ=255) cATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCaaaaa > 1:3481021/1‑148 (MQ=255) cATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCaaaaa > 1:3108117/1‑148 (MQ=255) aTAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCaaaaaa < 2:2852320/148‑1 (MQ=255) aTAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCaaaaaa < 2:318805/148‑1 (MQ=255) aTAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCaaaaaa > 1:3271310/1‑148 (MQ=255) tAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAg < 2:2974708/148‑1 (MQ=255) gCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTa < 2:1825912/148‑1 (MQ=255) gCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGACGATACCGCTTGCTTTATCGCCCAAAAAAGTa > 2:277314/1‑148 (MQ=255) cccGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTaa < 2:2377239/148‑1 (MQ=255) ccGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAat < 2:2221152/148‑1 (MQ=255) ccGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAat < 2:3257649/148‑1 (MQ=255) cGTTGAATTAAGTGTGTCACCATTTCTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAata < 2:1974206/148‑1 (MQ=255) cGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAata < 1:2131163/148‑1 (MQ=255) gTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAatat > 2:469120/1‑148 (MQ=255) ttGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATAtt < 1:1798972/148‑1 (MQ=255) tGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATAttt > 1:3232333/1‑148 (MQ=255) tGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATAttt > 1:152526/1‑148 (MQ=255) aTTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGc > 2:2285757/1‑148 (MQ=255) aTTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGc > 2:361275/1‑148 (MQ=255) tAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGa < 2:225872/148‑1 (MQ=255) tAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGa < 1:52023/148‑1 (MQ=255) tAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGa > 2:1119471/1‑148 (MQ=255) aaGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGAt < 2:2665461/148‑1 (MQ=255) gggTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATAc > 2:3370373/1‑148 (MQ=255) ttGGCACCATGACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGATTTATCGCCCAAAAAAGTAATATTTTGCGATACGa < 2:3311353/147‑1 (MQ=255) gTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGa < 1:1997563/148‑1 (MQ=255) ggCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTCGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAAc < 2:1820112/148‑1 (MQ=255) cACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACtt > 1:2579003/1‑148 (MQ=255) ccATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTAc > 1:431163/1‑148 (MQ=255) tACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGcc < 1:2283725/148‑1 (MQ=255) cATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTAACGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCt > 2:962872/1‑148 (MQ=255) aTTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTa > 2:3716524/1‑148 (MQ=255) tttACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTaa > 2:1782148/1‑148 (MQ=255) ttACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAat > 1:3599452/1‑148 (MQ=255) gATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTg < 2:3057466/148‑1 (MQ=255) aCCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAgg > 2:1474191/1‑148 (MQ=255) cGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGtt < 2:2446388/148‑1 (MQ=255) cTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTc < 1:566790/148‑1 (MQ=255) cTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTc < 1:454143/148‑1 (MQ=255) aCCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCg > 2:3386939/1‑148 (MQ=255) aCCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCg > 2:663975/1‑148 (MQ=255) ccAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGa > 2:795203/1‑148 (MQ=255) aaTTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGcc > 2:2248462/1‑148 (MQ=255) aTTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGccc > 1:2953486/1‑148 (MQ=255) tACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGc > 1:591785/1‑148 (MQ=255) aCCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCa < 1:50951/148‑1 (MQ=255) cGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAac < 1:22225/148‑1 (MQ=255) gACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAaca < 2:358204/148‑1 (MQ=255) aTTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCa < 1:3002897/148‑1 (MQ=255) ttGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCaa < 1:207716/148‑1 (MQ=255) tGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAAt < 2:1049316/148‑1 (MQ=255) aTACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAAtgg > 2:3337303/1‑148 (MQ=255) tACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAAtggt < 1:2771259/148‑1 (MQ=255) aCCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAAtggtg > 2:3775244/1‑148 (MQ=255) cccACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAAtggtgg < 1:1623182/148‑1 (MQ=255) ccACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATggtggt > 2:2304419/1‑148 (MQ=255) ccACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATggtggt > 2:2304378/1‑148 (MQ=255) ccACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGATTGCTTTATCGCACAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATggtggt < 1:1907321/148‑1 (MQ=255) cacaGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCACCACCAATGGTGGta > 2:1338511/1‑148 (MQ=255) cacaGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGta > 2:544898/1‑148 (MQ=255) cacaGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGta < 1:2333416/148‑1 (MQ=255) aGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAg < 1:3430976/148‑1 (MQ=255) aGTATCGAACGATGATGTCGCATCCATCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAg < 1:3382463/148‑1 (MQ=255) tATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGAc > 2:2178404/1‑148 (MQ=255) aTCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACa < 1:2968357/148‑1 (MQ=255) gAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTc < 1:962872/148‑1 (MQ=255) aaCGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCt < 1:614885/148‑1 (MQ=255) cGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCACTGGTGGTCTAGACATTCTTa > 2:2966496/1‑148 (MQ=255) cGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATGGACATTCTTa > 1:764944/1‑148 (MQ=255) cGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTa < 1:1000330/148‑1 (MQ=255) tgatgTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTg < 1:1119471/148‑1 (MQ=255) atgTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGAc < 2:3562789/148‑1 (MQ=255) atgTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGAc < 2:2411692/148‑1 (MQ=255) tgTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGAcc > 2:977839/1‑148 (MQ=255) cGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCTcc < 1:2909403/148‑1 (MQ=255) tccttcAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCTCCcaca < 1:3337303/148‑1 (MQ=255) tccttcAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCTCCcaca > 1:3079693/1‑148 (MQ=255) | ATTAACTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCTCCCACA > CP009273/1590733‑1591022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |