| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,607,793 | C→A | 5.7% | E390* (GAG→TAG) | sad ← | succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,607,793 | 0 | C | A | 5.7% | 797.9 / 15.7 | 208 | E390* (GAG→TAG) | sad | succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (98/98); new base A (7/5); total (105/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
Only 100 of 211 total aligned reads displayed.
AGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGATAGTAGTTACCTGCCCCAGC > CP009273/1607646‑1607940 | aGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTc > 1:3113156/1‑148 (MQ=255) gCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCa < 1:3267068/148‑1 (MQ=255) gCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCa < 1:1660500/148‑1 (MQ=255) ccACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCAc > 2:1041848/1‑148 (MQ=255) cACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACt < 2:3093420/148‑1 (MQ=255) tttttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCAt < 1:2698077/148‑1 (MQ=255) ttttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGGCGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCAtt > 1:2251190/1‑148 (MQ=255) ttttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCAtt > 1:2075314/1‑148 (MQ=255) aCGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCa > 1:2596540/1‑148 (MQ=255) cGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAg < 2:165178/148‑1 (MQ=255) ccacccAAGGCCACTCGCGCGTCGCTGGCACAATCACCAGTGAGAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTAACTATCATTAGCCAGtt < 2:3003088/148‑1 (MQ=255) caccaAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTc > 2:2462711/1‑148 (MQ=255) caAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAg < 2:1893766/148‑1 (MQ=255) caAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAg > 1:2498608/1‑148 (MQ=255) aGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGc > 1:1017886/1‑148 (MQ=255) aGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGc > 1:3393889/1‑148 (MQ=255) aGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGc > 1:1491235/1‑148 (MQ=255) aCTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGtt < 1:2656184/148‑1 (MQ=255) cTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTc < 2:3633451/148‑1 (MQ=255) tCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCt < 1:3427159/148‑1 (MQ=255) cgcgTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCa > 1:1727147/1‑148 (MQ=255) gcgTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCAt < 2:2908426/148‑1 (MQ=255) gcgTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCAt < 2:3591714/148‑1 (MQ=255) cGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCttt > 2:1183113/1‑148 (MQ=255) cGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCttt > 1:3203001/1‑148 (MQ=255) cTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTAACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCg > 1:898604/1‑148 (MQ=255) gCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCaa > 2:3256377/1‑148 (MQ=255) acaATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATg < 1:621231/148‑1 (MQ=255) aaTAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGt > 2:3673320/1‑148 (MQ=255) tAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGa < 2:3758508/148‑1 (MQ=255) tAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGa < 1:2147508/148‑1 (MQ=255) tAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGa < 2:1500502/148‑1 (MQ=255) tAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGa > 2:1253729/1‑148 (MQ=255) tAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTAACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGa > 1:1492253/1‑148 (MQ=255) aTTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGcc > 2:289217/1‑148 (MQ=255) tGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCCATGGTGATTGCCGc > 2:24114/1‑148 (MQ=255) gATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCa < 1:2301300/148‑1 (MQ=255) gATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCa < 1:319435/148‑1 (MQ=255) tAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAAc > 1:1747877/1‑148 (MQ=255) aaaCACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACg > 1:3653730/1‑148 (MQ=255) aaaCACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACg < 1:1915073/148‑1 (MQ=255) acacCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACggg > 1:2964475/1‑148 (MQ=255) cacCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACgggg < 1:3499779/148‑1 (MQ=255) cacCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACgggg > 1:3360097/1‑148 (MQ=255) cGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACAt < 1:3786013/148‑1 (MQ=255) cGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACAt > 1:833729/1‑148 (MQ=255) cATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGCTTGCCGCCACGGGGCCAAACAttt > 2:2712032/1‑148 (MQ=255) cATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACAttt > 2:2711372/1‑148 (MQ=255) aTTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATttc < 2:1388346/148‑1 (MQ=255) tCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATttctt < 2:2257143/148‑1 (MQ=255) tCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATttctt > 2:1624124/1‑148 (MQ=255) tCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATttctt < 2:2116790/148‑1 (MQ=255) cAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTcc < 2:185475/148‑1 (MQ=255) cAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTcc < 1:369552/148‑1 (MQ=255) gACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCg > 2:2440253/1‑148 (MQ=255) cGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGaa < 2:822525/148‑1 (MQ=255) cGTGCCGCCATCTGTCTGGCCTGTGTTTAGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGaa > 2:1277494/1‑148 (MQ=255) gTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGaaa < 1:988784/148‑1 (MQ=255) gTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGaaa < 2:3139828/148‑1 (MQ=255) gccgccATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTAACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAAcg < 1:2073575/148‑1 (MQ=255) cATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTc > 1:2137536/1‑148 (MQ=255) aTCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCa < 1:3689242/148‑1 (MQ=255) aTCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCa < 1:2374020/148‑1 (MQ=255) tctgtctgGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCAt < 2:944906/148‑1 (MQ=255) tctgTCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGAGGTCATTTCt > 2:2573356/1‑148 (MQ=255) tctgGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCt > 2:1809893/1‑148 (MQ=255) tctgGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCt > 2:3700429/1‑148 (MQ=255) ggCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTggg < 2:3264307/148‑1 (MQ=255) gCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTgggg < 2:2881620/148‑1 (MQ=255) tgtgTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTaa < 2:2547303/148‑1 (MQ=255) tgtgTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTaa > 2:2651584/1‑148 (MQ=255) gtgtTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAAc > 1:1144356/1‑148 (MQ=255) gtgtTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAAc < 1:2197484/148‑1 (MQ=255) gtgtTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAAc > 1:81734/1‑148 (MQ=255) gtTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACAt > 2:2817602/1‑148 (MQ=255) tttCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCACTGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTCACAtt > 2:2322032/1‑148 (MQ=255) cGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGc < 1:1624124/148‑1 (MQ=255) tCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCa > 2:2995762/1‑148 (MQ=255) cAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAg > 1:1291104/1‑148 (MQ=255) cAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAg > 1:2257177/1‑148 (MQ=255) aGTGGTAAAAATGGTCGCTGAAAGGCCGAACTAACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGa < 1:1886607/148‑1 (MQ=255) gTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGaa < 2:3203001/148‑1 (MQ=255) tGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAAc > 2:1883893/1‑148 (MQ=255) gTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCg < 1:1183113/148‑1 (MQ=255) gTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCg > 1:2736021/1‑148 (MQ=255) tAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGt < 2:3165113/148‑1 (MQ=255) aaaaaTGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGtt < 1:2884018/148‑1 (MQ=255) aaaaTGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTg > 1:304952/1‑148 (MQ=255) aaaTGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTgg > 2:792411/1‑148 (MQ=255) gTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGAt > 1:3563864/1‑148 (MQ=255) gCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGAtagt < 2:60467/148‑1 (MQ=255) aaaGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGATAGTAGtt > 2:44896/1‑148 (MQ=255) aaaGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGATAGTAGtt > 1:454592/1‑148 (MQ=255) aaGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGATAGTAGTTa > 1:2181243/1‑148 (MQ=255) aaGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGATAGTAGTTa > 2:2747337/1‑148 (MQ=255) aGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGATAGTAGTTAc < 2:1733391/148‑1 (MQ=255) ggCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGATAGTAGTTAcc < 2:3185945/148‑1 (MQ=255) gAACTAACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGATAGTAGTTACCTGcc > 2:1127951/1‑148 (MQ=255) aaCTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGATAGTAGTTACCTGccc < 1:2440253/148‑1 (MQ=255) aaCTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGATAGTAGTTACCTGccc < 2:557002/148‑1 (MQ=255) | AGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATTTCTTCCCGAAACGCGGTCATTTCTGGGGTAACATTCGCCAGAACCGTTGGCGGATAGTAGTTACCTGCCCCAGC > CP009273/1607646‑1607940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |