| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,178,915 | C→G | 15.2% | intergenic (‑135/+88) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,178,915 | 0 | C | G | 15.2% | 538.1 / 19.0 | 184 | intergenic (‑135/+88) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Reads supporting (aligned to +/- strand): ref base C (27/126); new base G (28/2); total (55/129) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.39e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 186 total aligned reads displayed.
GGTCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAG > CP009273/2178768‑2179062 | ggTCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGc > 1:3424248/1‑148 (MQ=255) gTCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCg < 2:3292522/148‑1 (MQ=255) tCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCga < 1:2085379/148‑1 (MQ=255) gACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCgatg < 2:387794/148‑1 (MQ=255) gACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCgatg < 1:2108699/148‑1 (MQ=255) aCTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGGggtga > 1:501190/1‑148 (MQ=255) tGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATaa < 2:1747047/148‑1 (MQ=255) tGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATaa > 2:3445929/1‑148 (MQ=255) gCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCATGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATaaa < 1:2622058/148‑1 (MQ=255) gCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGATaaa > 2:3456916/1‑148 (MQ=255) cATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGGGGTGTTAAAt > 2:482419/1‑148 (MQ=255) aGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGc < 1:1088864/148‑1 (MQ=255) gCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAgagg < 2:2700209/148‑1 (MQ=255) tGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGAt < 1:607516/148‑1 (MQ=255) tGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTTGGATTATAAATAACAGaggagggt > 1:1994680/1‑146 (MQ=255) tGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACGTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGAt < 2:3434105/148‑1 (MQ=255) ccATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATgg < 2:2062467/148‑1 (MQ=255) ccATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATgg < 2:354437/148‑1 (MQ=255) cATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGt < 1:1721741/148‑1 (MQ=255) tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTaa < 1:2351095/148‑1 (MQ=255) tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGGCGTGTGGTTGCGATGATAAAAAGGCGAGGAGGTTGGTaa > 2:1658249/1‑148 (MQ=255) aaCGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTGGGTGATTAATAGCAGAGGCGGAGGGTTAt > 2:2319878/1‑148 (MQ=255) aaCGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGGTGGGGTGGTAAATAACAGCGGCGGGTgggggt > 1:692138/1‑144 (MQ=255) gTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTc < 1:3307583/148‑1 (MQ=255) gTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTc < 2:79765/148‑1 (MQ=255) aagCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGGGGTGTTAAAAAGCAGGGGAGGGTGGTGATGTGCCgcgc > 1:2190008/1‑148 (MQ=255) gCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTGGGTTTGGATTTTAAAAAGCAGATGAGGATTGTAATTTACAGCGCAc > 2:1469297/1‑148 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCAcgcg < 2:3168465/148‑1 (MQ=255) aCCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTCGAGGATAAAAAGCAGCGGAGGATGGTAAAGTCCAGCGCACCCGGTg > 2:2972770/1‑148 (MQ=255) aCCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGAAGATAAATCGCAGAGGAGGTTGGTTATTTGCAGCGCACGCGGTg > 2:2704284/1‑148 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTaaa < 2:2292961/148‑1 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTaaa < 1:3547562/148‑1 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTaaa < 1:3190693/148‑1 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTCGATTATAAATAGCCGAGGAGGATGGTAATTTCCAGCGCACGCGTTTTaaa > 2:2788221/1‑148 (MQ=255) ggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATAGCAGAGGAGGATGGTAATGTCCAGCGCACGCCTTGTAAAcca > 2:2206975/1‑146 (MQ=255) cGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGaa < 1:650365/148‑1 (MQ=255) ttCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACgg < 2:416714/148‑1 (MQ=255) cccTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGGGCTGATAAAAAGCAGAGGCGGATTGTAATGTGCCCCGCCCCCCGTGGAAACCAGGaaaaaacgca > 1:253794/1‑143 (MQ=255) ccTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGATAAATAGCAGCGGGGGGAGGTAATGTCGAGCGCCCGCGGTGTAAAAGAGGCAAAACCGccc > 2:2862959/1‑146 (MQ=255) cTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑Gt < 2:3216618/148‑1 (MQ=255) tGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGGTGTTAAAAAGCAGAGGAGGGTGGGAATGTCCCGCGCACCCGGTGTTAAACAGGAAAAAAGGCA‑GTTTTTCa > 1:544604/1‑148 (MQ=255) tGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGGTGGGGTGTTAAAAAGCAGAGGAGGATGGTAATGTGCAGCGCCCCCCGTGTAAAACAGGAAAAACACCA‑Ggttttaa > 1:713351/1‑145 (MQ=255) ggCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACaa < 2:276739/148‑1 (MQ=255) ggCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCGTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACaa < 2:3495023/148‑1 (MQ=255) gCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAAt < 2:3785804/148‑1 (MQ=255) cATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGATAAATCGCAGAGGAGGTTGGGAATGTCCCGCCCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTTCAAta > 2:2796439/1‑147 (MQ=255) tCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGtt < 2:3626160/148‑1 (MQ=255) tCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGGTTATAAAAGGCAGAGGGGGTTGGTTATTTGCCGCCCACCCGGTGTTAACGAGGAAAAAAGGCA‑GTTTTTCaaaagcggt > 2:694246/1‑141 (MQ=255) ccAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTta < 1:1268248/148‑1 (MQ=255) cAGATCAGGTTATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCTATTATAAATCGCAGAGGTGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGTAAAAACGGCA‑GTTTTACAATCGCGTtaa < 1:3590889/148‑1 (MQ=255) cAGATCAGGTGATACGGTTATTTCTCAGCCTTCACGCAGACGGGCACCCCTAGTGGTTTGGTTGGGATTATAAATCGCAGAGGCGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTtaa < 1:2913867/148‑1 (MQ=255) gATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTtaata < 2:309534/148‑1 (MQ=255) aTCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGGGATGATAAAAAGCAGAGGAGGATGGTAATTTCCCGCCCACCCGTTGTAAAAGAGGAAAAACGGCACGTTTTA‑AAACGCGTtaataa > 2:3638595/1‑148 (MQ=255) aTCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTtaataa < 2:56066/148‑1 (MQ=255) aTCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTtaataa < 2:520868/148‑1 (MQ=255) aTCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTtaataa < 2:3742891/148‑1 (MQ=255) ctgttGATACGGTTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCTTTTGGTTGCGATTATAAATCGCAGAGGCGGATGGTATTGTCCAGCGCACGCTTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAat < 1:3586347/144‑1 (MQ=255) ctggTTATACGGTTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATTATAAATCGCAGTGGAGTTTGGTAATGTCCAGCGCACGCGTTTTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAat < 1:3586236/146‑1 (MQ=255) aGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAatt < 2:1377634/148‑1 (MQ=255) aGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAatt < 2:1377660/148‑1 (MQ=255) tGATACGGGTATTTCTCAGACTTCACGCAGATGGGCACCCAGAGTAGTTTGTTTGCGATGATAAATCGCAGAGGAGGTTGGTAATGTCCAGCGCACGCTTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAattatt < 2:2300429/148‑1 (MQ=255) gATACGGGTATTTCTCAGCCTTCACGCAGACGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGGGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTAttt < 1:1782783/148‑1 (MQ=255) aTACGGTTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATTATAAATCGCAGAGGAGGTTGGTAATGTCCAGCGCACGCTTTTTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTg < 1:455718/148‑1 (MQ=255) tACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGCGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGa < 1:2319878/148‑1 (MQ=255) aCGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGCGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGat < 1:628201/148‑1 (MQ=255) aCGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGat < 2:2246767/148‑1 (MQ=255) aCGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGat < 2:3396632/148‑1 (MQ=255) cGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAATTCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGata < 1:2639388/148‑1 (MQ=255) cGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGata < 1:726528/148‑1 (MQ=255) tttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCTATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGaa < 1:1544272/148‑1 (MQ=255) ttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAAt < 2:259813/148‑1 (MQ=255) ctcAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGTGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATcc < 2:993026/148‑1 (MQ=255) tccTTCACGCTGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGTGGAGGATGGTAATGTCCAGCGCACGCGTTTTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCa < 2:1294003/147‑1 (MQ=255) ccTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATTATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCAc < 1:2381789/148‑1 (MQ=255) cTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCAcc < 1:2755975/148‑1 (MQ=255) cTTCACGATGAAGGGCACCCCTTTTCTTTTGGTTGCTTTTATAAATCGAAGAGTAGTATGTTATTGTCCTGCGCACGCGTTGTAAACTAGTAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCAcc < 1:984556/148‑1 (MQ=255) cACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATTATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTc < 1:836794/148‑1 (MQ=255) cACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTc < 2:2846839/148‑1 (MQ=255) cACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTc < 2:715046/148‑1 (MQ=255) aCGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAACACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCa < 1:961508/148‑1 (MQ=255) gCATAAGGGCACCCCGATTCGTTTGTTTTGTTTTATAAATCGCATAGGAGGTTGGTAATGTCCAGCGCACGCGTTTTAAAGGTGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGa < 1:1469297/148‑1 (MQ=255) gCAGAAGGGCACCCCTTGTCTTTTTTTTGCTATTATAAATCTCATAGGATTATGTTACTGTCCAGCGCACGCTTTGTAAAGGAGTAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGa < 1:1656430/148‑1 (MQ=255) gCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGa < 1:187181/148‑1 (MQ=255) gatgggCACCCCGTGTCGTTTGGTTGCTATGATAAATCGCTGAGGAGGATGGTATTTTCCAGCGCACGCTTTTTAAACGAGGAAACACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACg < 1:2692225/145‑1 (MQ=255) gAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAACACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACg < 1:2692240/148‑1 (MQ=255) aaGGGCACCCCGTGTCGTTTGGTTGCGAGGATAAATCGCAGAGGAGGATGGTAAGGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGa < 1:3739696/148‑1 (MQ=255) aaGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGTGGAGGTTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGa < 1:556272/148‑1 (MQ=255) aaGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGa < 2:3757720/148‑1 (MQ=255) gggCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGTGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACa < 1:1779209/148‑1 (MQ=255) cACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATcc < 2:732793/148‑1 (MQ=255) cccGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGa < 1:3445929/148‑1 (MQ=255) cGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCTTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtc < 1:2945601/148‑1 (MQ=255) cGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAACACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtc < 1:441461/148‑1 (MQ=255) cGAGTATTTTGGTTGAGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGTAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtc < 2:1983046/148‑1 (MQ=255) aGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtctt < 1:2132498/148‑1 (MQ=255) tCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtcttct > 2:3261735/1‑148 (MQ=255) tCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtcttct > 2:877454/1‑148 (MQ=255) tttGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCa > 2:587413/1‑148 (MQ=255) ttGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCTTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGttt < 1:1075474/148‑1 (MQ=255) cGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAg < 2:2453964/148‑1 (MQ=255) | GGTCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAG > CP009273/2178768‑2179062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |