| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,178,937 | A→T | 12.3% | intergenic (‑157/+66) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,178,937 | 0 | A | T | 12.3% | 385.8 / 6.1 | 180 | intergenic (‑157/+66) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Reads supporting (aligned to +/- strand): ref base A (36/111); new base T (7/13); total (56/124) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 196 total aligned reads displayed.
CTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGATG > CP009273/2178790‑2179084 | tGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGAt < 1:607516/148‑1 (MQ=255) tGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGAt < 1:1921959/148‑1 (MQ=255) tGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACGTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGAt < 2:3434105/148‑1 (MQ=255) ccATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATgg < 2:2062467/148‑1 (MQ=255) ccATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATgg < 2:354437/148‑1 (MQ=255) tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGGGGTGGTAAAAACCAGAGGAGGATTGtga > 1:1573276/1‑146 (MQ=255) aaCGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTGGGTGATTAATAGCAGAGGCGGAGGGTTAt > 2:2319878/1‑148 (MQ=255) aaCGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGCGCTGATAAATAGCCGAGGAGGATGGTaaa > 2:2755975/1‑147 (MQ=255) gTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTc < 2:79765/148‑1 (MQ=255) gTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTc < 1:3307583/148‑1 (MQ=255) aagCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGGGGTGTTAAAAAGCAGGGGAGGGTGGTGATGTGCCgcgc > 1:2190008/1‑148 (MQ=255) gCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTGGGTTTGGATTTTAAAAAGCAGATGAGGATTGTAATTTACAGCGCAc > 2:1469297/1‑148 (MQ=255) cAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTGGGTGGTTAATAGCAGAGGAGGGTGGTGATTTGCAgcgcccc > 1:2105677/1‑145 (MQ=255) tGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGTTAAAAAGCAGAGGAGGTTGGGAATGTGCCGCGCAcgcgg > 2:278830/1‑147 (MQ=255) tGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTTGGGTGTTAAAAAGGAGAGGGGGGGGGGTATGTCCCgcgcccccgg > 1:2669459/1‑142 (MQ=255) aCCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGAAGATAAATCGCAGAGGAGGTTGGTTATTTGCAGCGCACGCGGTg > 2:2704284/1‑148 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTaaa < 2:2292961/148‑1 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTaaa < 1:3547562/148‑1 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTaaa < 1:3190693/148‑1 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTGGGTGATTAAAACCACAGGAGGATTGTTAAGTACCGCGCCCCCCGTGTaaa > 1:2332992/1‑148 (MQ=255) gtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGCGATGATAAAAAGCCGAGGAGGCTGGTAAATTCCAGCGCACGCCTTGTaaaa > 2:165999/1‑147 (MQ=255) tggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACg < 2:2038360/148‑1 (MQ=255) ggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATAGCAGAGGAGGATGGTAATGTCCAGCGCACGCCTTGTAAAcca > 2:2206975/1‑146 (MQ=255) cGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGaa < 1:650365/148‑1 (MQ=255) gACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATGAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGaaaaa < 1:1740676/148‑1 (MQ=255) tCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGc < 2:2802473/148‑1 (MQ=255) cccTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGGGCTGATAAAAAGCAGAGGCGGATTGTAATGTGCCCCGCCCCCCGTGGAAACCAGGaaaaaacgca > 1:253794/1‑143 (MQ=255) ccTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGGTGATAAAAAGCAGAGGAGGCTGGTAATTTGCCGCGCACGCGTTGTAAAAGAGGAAAAAAGGCA‑g > 2:2862603/1‑148 (MQ=255) cTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGGTTGGGGGATTAATAGCAGAGGTGGATGGTGTTGTACGGCCCCCGCCGGGTTGACGAGGAAAAAAGGCA‑gg > 1:1661172/1‑147 (MQ=255) aCGCTGGCATTATCCAGATCAGGTGATACGGTTATTTCTCAGCCTTCACGCAGAAGGGCACCCCTAGTCGTTTGGTTGCTATTATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTTTAAACGAGGAAAAACGGCA‑Gttt < 1:2940340/148‑1 (MQ=255) gCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTa < 1:290347/148‑1 (MQ=255) tGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGGTGTTAAAAAGCAGAGGAGGGTGGGAATGTCCCGCGCACCCGGTGTTAAACAGGAAAAAAGGCA‑GTTTTTCa > 1:544604/1‑148 (MQ=255) tGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGGTGGGGTGTTAAAAAGCAGAGGAGGATGGTAATGTGCAGCGCCCCCCGTGTAAAACAGGAAAAACACCA‑Ggttttaa > 1:713351/1‑145 (MQ=255) ggCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCGTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACaa < 2:3495023/148‑1 (MQ=255) gCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAAt < 2:3785804/148‑1 (MQ=255) ttATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGCCCTGATAAAACGACTAAGAGGATTGGAAAGTCAAGCCCCCCCCGTTTTAACGAGGAAAAAACGCA‑GATTTaaaaaagc > 1:935080/1‑144 (MQ=255) tCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGtt < 2:3626160/148‑1 (MQ=255) tCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGGTTATAAAAGGCAGAGGGGGTTGGTTATTTGCCGCCCACCCGGTGTTAACGAGGAAAAAAGGCA‑GTTTTTCaaaagcggt > 2:694246/1‑141 (MQ=255) ccAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTta < 1:1268248/148‑1 (MQ=255) cAGATCAGGTTATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCTATTATAAATCGCAGAGGTGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGTAAAAACGGCA‑GTTTTACAATCGCGTtaa < 1:3590889/148‑1 (MQ=255) aGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTTGGTGCGATGAAAAAACCCAGAGGCGGATGGTAATGTCCAGCGCACGCCGTGTAAAACAGGAAAAACCGCC‑GTTTTAAAAACTCGTtcat > 2:3284489/1‑148 (MQ=255) gATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTtaata < 2:309534/148‑1 (MQ=255) aTCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGGGATGATAAAAAGCAGAGGAGGATGGTAATTTCCCGCCCACCCGTTGTAAAAGAGGAAAAACGGCACGTTTTA‑AAACGCGTtaataa > 2:3638595/1‑148 (MQ=255) aTCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTtaataa < 2:3742891/148‑1 (MQ=255) ctgttGATACGGTTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCTTTTGGTTGCGATTATAAATCGCAGAGGCGGATGGTATTGTCCAGCGCACGCTTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAat < 1:3586347/144‑1 (MQ=255) ctggTTATACGGTTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATTATAAATCGCAGTGGAGTTTGGTAATGTCCAGCGCACGCGTTTTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAat < 1:3586236/146‑1 (MQ=255) aGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAatt < 2:1377660/148‑1 (MQ=255) tGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAattatt < 2:2775252/148‑1 (MQ=255) tGATACGGGTATTTCTCAGACTTCACGCAGATGGGCACCCAGAGTAGTTTGTTTGCGATGATAAATCGCAGAGGAGGTTGGTAATGTCCAGCGCACGCTTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAattatt < 2:2300429/148‑1 (MQ=255) gATACGGGTATTTCTCAGCCTTCACGCAGACGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGGGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTAttt < 1:1782783/148‑1 (MQ=255) aTACGGTTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATTATAAATCGCAGAGGAGGTTGGTAATGTCCAGCGCACGCTTTTTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTg < 1:455718/148‑1 (MQ=255) aTACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGTTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTg < 1:511803/148‑1 (MQ=255) aCGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGCGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGat < 1:628201/148‑1 (MQ=255) cGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCTTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGata < 1:2639322/148‑1 (MQ=255) cGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGata < 1:726528/148‑1 (MQ=255) ggTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAACCGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGatata < 2:501190/148‑1 (MQ=255) aTTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGa < 2:3250328/148‑1 (MQ=255) ttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAAt < 2:259813/148‑1 (MQ=255) ctcAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGTGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATcc < 2:993026/148‑1 (MQ=255) cAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGTTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAg < 2:1239192/148‑1 (MQ=255) cAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTGGTTGTTAAAAAGCCGGGGGGGGGGGTAATTTCCACCCCACGCGGTGTTAACGCGGTAAAAACGCC‑GTTTTTAAATACCGTTAATAAATTATTTTTTATATTaaaaaag > 2:376769/1‑143 (MQ=255) cTTCACGCAGAAGGGCACCCCGTTTGGTTTGGTTGCTATTATAAATCGCAGAGGAGGATGTTAATGTCCAGCGCACGCTTTGTAAACGCGGAAACACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCAcc < 1:984554/148‑1 (MQ=255) cTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCAcc < 1:2755975/148‑1 (MQ=255) cACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATTATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTc < 1:836794/148‑1 (MQ=255) cACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTc < 2:715046/148‑1 (MQ=255) aCGCAGAAGGGCACCCCGAGTCGTGGGGGTGGGTTTATAAATAGGAGAGGGGGTTGGTTATGTGCAGCCCACCCGTTGGTAAAGAGGAAAAAACGCA‑GGTTTAAAAACGCGTTTATAAATTATTTTTTATATTAATACATCACCCTCa > 2:3196141/1‑148 (MQ=255) cGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGATAAATAGCACAGGAGGATGGTAATTTCCAGCCCACCCGGTGTTAACCAGGAAAAACGGCA‑CTTTTACAAGCGCGGGAATAAAATATTTGTTATATGAATCCaccaccaaccg > 2:313808/1‑143 (MQ=255) gCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGa < 1:187181/148‑1 (MQ=255) gAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAACACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACg < 1:2692240/148‑1 (MQ=255) aaGGGCACCCCGTGTCGTTTGGTTGCGAGGATAAATCGCAGAGGAGGATGGTAAGGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGa < 1:3739696/148‑1 (MQ=255) aaGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGTGGAGGTTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGa < 1:556272/148‑1 (MQ=255) gggCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACa < 1:1529167/148‑1 (MQ=255) ggCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACAt < 2:559768/148‑1 (MQ=255) cACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATcc < 2:732793/148‑1 (MQ=255) cccGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGa < 1:3445929/148‑1 (MQ=255) aGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtctt < 1:2132498/148‑1 (MQ=255) tCGTTTGGTTTCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACCCGTTGTAAACGAGGAAAAAAGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATACAGCACCATCAGAACGACATCCAGAtcttat > 1:2373114/1‑146 (MQ=255) tCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtcttct > 2:877454/1‑148 (MQ=255) tttGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCa > 2:587413/1‑148 (MQ=255) ttGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCAc > 2:1329179/1‑148 (MQ=255) gTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtt < 2:401419/148‑1 (MQ=255) ttGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCTTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGttt < 1:1075474/148‑1 (MQ=255) cGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAg < 2:2453964/148‑1 (MQ=255) atgatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTTTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCt < 1:435063/148‑1 (MQ=255) tgatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTc > 1:1089106/1‑148 (MQ=255) tgatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTc < 2:341970/148‑1 (MQ=255) tCGCAGAGGAGGTTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATccccc < 1:694246/148‑1 (MQ=255) tCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATccccc > 1:1463545/1‑148 (MQ=255) cGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCt < 2:436892/148‑1 (MQ=255) cAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTgg > 1:2462196/1‑148 (MQ=255) gaggagGATGGTAATGGCCAGCGCCCGCGTTGTAAACGAGGAAAAACGGCA‑GTATTACAATCGCGTTAATATATTATTTGATAGATGAAGCCAGCACCTACAGAACGACATCCAGATCTTCATCACGATATAGCTCATACCCATCGTg > 1:3792320/1‑148 (MQ=255) aggaggATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGa > 2:1431561/1‑148 (MQ=255) gaggaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAAc > 1:4732/1‑148 (MQ=255) gaggaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAAc > 1:3766993/1‑148 (MQ=255) aggaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACg < 2:2872581/148‑1 (MQ=255) aggaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACg < 2:1994680/148‑1 (MQ=255) ggaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGa < 2:2957328/148‑1 (MQ=255) gaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCACCCTGGTGAACGAt > 2:1028245/1‑148 (MQ=255) aTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGAtg < 2:1573276/148‑1 (MQ=255) aTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGAtg < 1:3763777/148‑1 (MQ=255) | CTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCA‑GTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGATG > CP009273/2178790‑2179084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |