| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,447,745 | C→A | 15.0% | pseudogene (736/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,447,745 | 0 | C | A | 15.0% | 455.3 / 13.3 | 164 | pseudogene (736/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (95/39); new base A (2/28); total (97/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.52e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 164 total aligned reads displayed.
CGTAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGC > CP009273/2447601‑2447891 | cgTAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCata < 1:1163692/148‑1 (MQ=255)cgTAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCata < 2:1211374/148‑1 (MQ=255) tAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCataat > 2:895742/1‑148 (MQ=255) tAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCataat > 1:80798/1‑148 (MQ=255) tAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCataat > 1:1807213/1‑148 (MQ=255) tAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCataat > 1:1809708/1‑148 (MQ=255) tAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCataat > 1:80806/1‑148 (MQ=255) aGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCataata < 2:80798/148‑1 (MQ=255) aGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCataata < 2:80445/148‑1 (MQ=255) aGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCataata < 2:1807213/148‑1 (MQ=255) gCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAg < 1:527753/148‑1 (MQ=255) gCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAg > 2:2840102/1‑148 (MQ=255) gCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTCCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAg < 2:2030575/148‑1 (MQ=255) ccGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGc > 1:3199913/1‑148 (MQ=255) ccGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGAATAATAGc > 1:2243752/1‑148 (MQ=255) cAGATTGGGTGGAAAAATTTGATCTTCTGTGATGAAACTGCAACCAAAATAATTAAAACCGTCGAAAATATCGTATTTGAGTTAATCTTCGCCCAGCGCCTGTTTGGCTTTTAATGACGTTAA‑CGCCCGCCAGGAATAATAGCGactc < 2:2727565/148‑1 (MQ=255) cAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGactc > 2:968866/1‑148 (MQ=255) ataTTGGGAGCCAACATTTGATCGTCAGTGCTGACACGCCCACAAACATAATTAAAACCGTCTAAAATATCGGAATTGAGTTAATCTTCGCCCCGCGCCTGTTTGGCTTTTATTGAGGGTAA‑CGCCCGCCAGGCATAATAGCGactcc < 2:2740183/146‑1 (MQ=255) aTTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGactccac > 2:2946/1‑148 (MQ=255) aTTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGactccac > 2:2268341/1‑148 (MQ=255) aTTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGactccac > 2:3349119/1‑148 (MQ=255) aTTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGactccac > 2:3805720/1‑148 (MQ=255) aTTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGactccac > 2:826321/1‑148 (MQ=255) ggaggaAAAATTTGATCGTCAGTGCTTACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGTTAATCTTCGCCCCGCGCCATTTTGGCTTTTATTGACGTAAA‑CGCCCGCCTGGAATAATAGCGACTCCACTccc < 2:1275789/148‑1 (MQ=255) gAGGAAAAATTTGATCGTATGTGCTGACACTGCAACAAAAATATTTAAAACCGTATAAAATATCTTAATTGAGGTAATCTTCGCCCAGGGCCAGTTTGGATTTTATTGACGGTAA‑CGCCCGCCAGGAATAATAGCGACTCCACTCCCa < 2:3160847/148‑1 (MQ=255) aGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCAt > 1:2114728/1‑148 (MQ=255) aGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCAt > 2:612935/1‑148 (MQ=255) gCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCAttt > 1:2065920/1‑148 (MQ=255) cATTTGATCGTCAGTGCTGCCACTGCCACCAACATAATTAAAACCGTGTAAAATATCGGAATTGTGTAAATCTTCGCCCCGCGCCTTTTTGGCTTTTAATGACGTTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCAttttttt < 2:504472/148‑1 (MQ=255) tttGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTtg > 2:2631973/1‑148 (MQ=255) ttGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTtgt > 1:1118877/1‑148 (MQ=255) ttGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTtgt > 1:2447623/1‑148 (MQ=255) cgtatgTGCTTACAATCCCAAAAAAATAATAAAACCCTTCTAAATTAGCGTAATTGTGTTATTCTTCGCCCAGCGCATTTTTGGATTTTATTGACTTTAA‑CGCCCCCCAGTAATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTc < 2:3531914/143‑1 (MQ=255) tGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATcgcc > 2:426591/1‑148 (MQ=255) gACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGAAGGTAA‑AGCCCGCCAGGAATAATAGCGACTCCACTCCCAATTTTTTTTTGTGTCATCgccgccc > 1:970161/1‑147 (MQ=255) tGCCACCAACATAATTAAAACCGTCGAAATTATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATCGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTc < 2:2529349/148‑1 (MQ=255) gCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCTGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCa < 2:1848952/148‑1 (MQ=255) gCCACAAAAAAAATAAAAACCGCCTAAAATATCTCAATTGAGGAAATCTCCGCCCCGCGCCTTTTTGGCTTTTATTGAGGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCa < 2:34474/148‑1 (MQ=255) cccaccaACATATTAAAAACCGACTAAAATTGCGTTTTTGTGGTAATCTTCGCCCAGCGCCTGTTTGGTTTTTAATGAGGTTAC‑CCCCCGCCAGGAAAAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCa < 2:2899582/147‑1 (MQ=255) accaACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCg > 1:3134959/1‑148 (MQ=255) accaACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCg > 1:1230958/1‑148 (MQ=255) ccaAAATAATAAACACCGTCAAAAATACCGGAATTGAGGAAATCTTCCCCCCGCGCCAGTTTGGTTTTTAATGACGGTAC‑CCCCCCCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGt < 1:2792038/148‑1 (MQ=255) caACATAATTAAAACCGTCGAAAATATCGTAATTGAGTTAATCTTCGCCCAGCGCCATTTTGGCTTTTAATCACGTTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGtc < 2:510665/148‑1 (MQ=255) aaCATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGtca > 2:1617426/1‑148 (MQ=255) aaCATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGtca > 2:1616976/1‑148 (MQ=255) aaaaaaTAAAACCCGTCCAAAATTGCGTATTTGTGTTAATCTCCGCCCCGCGCGTTTTTGGTTTTTAATGAGGGAAC‑CCCCCCCCCGGAAAAACCGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGtcat < 1:3018941/144‑1 (MQ=255) cATATTTAAACCCGTCGAAAATATGGTATTTGAGTTAATCTTCGCCCAGGGCGATTTTGGCTTTTAATTACGGTAC‑CGCCCGCCAGTCATAATCGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGtcatc < 2:2050822/148‑1 (MQ=255) aataataAAACCCGACAAAAAAATCGTTATTGCGTTAACCTCCCCCCCCCCCCTTTTTGGTTTTTAATGA‑GGTAACCGCCCGCCAGCAAAAAACGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGtcatc < 1:251586/147‑1 (MQ=255) aaTAATTAAAACCGTCGAAAATTTCGGATTTGAGGTAAGCTTCGCCCCGCGCCTGTTTGGCTTTAAATGACGGTAC‑CGCCCGCCAGGCATAATCGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGtcatc < 2:2051039/147‑1 (MQ=255) aaTTAAAACCGTCGAAAATAGCGGATTTGAGGAAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAAAAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGtcatcatc < 2:156610/148‑1 (MQ=255) ttAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTcatcatcat > 2:168578/1‑148 (MQ=255) ttAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTcatcatcat > 1:3112955/1‑148 (MQ=255) aaCCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACt > 1:2434457/1‑148 (MQ=255) aaCCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATATTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACt > 2:3808313/1‑148 (MQ=255) ccGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTgc > 1:1368324/1‑148 (MQ=255) cGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTgcg > 2:876536/1‑148 (MQ=255) ctaaaaTATCGTAATTGAGGTAATCTTCGCCCTGCGCCATTTTGGCTTTTATTGAGGTTAA‑CCCCCGCCAGGAATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGt < 2:1421515/146‑1 (MQ=255) taaaaTATCGTATTTGTGTTAATCTTCGCCCAGCGCCTGTTTGGCTTTTAATGACGTTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTa < 2:1546141/147‑1 (MQ=255) aaaaTATCGGATTTTAGGTAATCTACGCCCTGCGCCTTTTGGGCTTTTAATGACGTTAA‑CCCCCGCCAGCAATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTAt < 2:1161940/148‑1 (MQ=255) aaaTATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATg > 2:1574380/1‑148 (MQ=255) aaTATGGGAATTGTGGTAAGCTTCGCCCCGCGCCTTTTTGGTTTTTATTGACGGTAA‑CGCCCGCCTGCAATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGt < 1:2840102/148‑1 (MQ=255) atatCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGAGCGTATGtt > 2:474368/1‑148 (MQ=255) atCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGa > 2:1290957/1‑148 (MQ=255) atCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGa > 1:528901/1‑148 (MQ=255) tCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGAt > 2:2783836/1‑148 (MQ=255) cgcaaTTGCGGTAACCTCCGCCCCGCCCCAGTTTGGCTTTTAAGGCGGGTAC‑CCCCCGCCCGGCATAATCGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATa < 2:1961953/145‑1 (MQ=255) cgcaaTTGAGGTAATCTGCCCCCAGCCCCAGTTTGGCTTTTATTGACGGTAC‑CGCCCCCCAGGAATAAACGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATa < 2:1961931/145‑1 (MQ=255) tAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGcc > 1:2110391/1‑148 (MQ=255) aTCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAg > 1:2937892/1‑148 (MQ=255) aTCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAg > 1:1904342/1‑148 (MQ=255) tCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAg > 2:2799633/1‑148 (MQ=255) tCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAg > 2:168125/1‑148 (MQ=255) cccAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAgcgc > 2:1006249/1‑148 (MQ=255) cgcCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATa > 1:2840751/1‑148 (MQ=255) cgcCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATa > 1:2480350/1‑148 (MQ=255) cgcCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATa > 1:2480222/1‑148 (MQ=255) cgcCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATa > 2:1651893/1‑148 (MQ=255) gTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCa > 2:2761080/1‑148 (MQ=255) tttGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCAt > 1:261747/1‑148 (MQ=255) tttGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCAt > 2:1892206/1‑148 (MQ=255) ttGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATg > 1:921414/1‑148 (MQ=255) ttGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTAGGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATg > 1:2319822/1‑148 (MQ=255) gCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGcc > 1:1471047/1‑148 (MQ=255) ttttAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCACATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGcccc > 1:2043949/1‑148 (MQ=255) tttATTGAGTGTAA‑CGCCCGCCAGGAATAATCGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCa < 1:3776873/148‑1 (MQ=255) tttAATGACGGTAA‑CGCCCGCCTGGAATAATCGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCa < 1:3776867/148‑1 (MQ=255) aTGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGtt > 1:1569321/1‑148 (MQ=255) tGACGTTAA‑CGCCCGCCAGGAATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTa < 2:3199913/148‑1 (MQ=255) tGACGGTAC‑CGCCCGCCAGGAATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTa < 1:235268/148‑1 (MQ=255) ggTAC‑CGCCCGCCTGGAATAATCGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAAccc < 2:531811/148‑1 (MQ=255) tAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCg > 1:3171784/1‑148 (MQ=255) aa‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGa > 1:3514145/1‑148 (MQ=255) cgcccgccAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGAcc > 1:618145/1‑148 (MQ=255) cgcccgccAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGAcc > 1:1001214/1‑148 (MQ=255) cgcccgccAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCACATACGCCATGGCCCCAGGTTAACCCCGAcc > 2:3186140/1‑148 (MQ=255) cgcccgccAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGACATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCACATACGCCATGGCCCCAGGTTAACCCCGAcc > 2:3186494/1‑148 (MQ=255) cgccAGGCATAAAAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTcc < 2:1466608/148‑1 (MQ=255) ccAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCg < 1:3256899/148‑1 (MQ=255) aGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGtt > 1:1403376/1‑148 (MQ=255) gCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGc > 1:3018152/1‑148 (MQ=255) | CGTAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAA‑CGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGC > CP009273/2447601‑2447891 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |