Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,463,910 G→T 11.8% R434I (AGA→ATA)  gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,463,9100GT11.8% 631.7 / 3.3 250R434I (AGA→ATA) gtrSserotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand):  ref base G (63/140);  new base T (26/4);  total (102/148)
Fisher's exact test for biased strand distribution p-value = 6.75e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 260 total aligned reads displayed.

TATCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCT  >  CP009273/2463763‑2464057
                                                                                                                                                   |                                                                                                                                                    
taTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAAATAAAAg                                                                                                                                                      >  2:2675338/1‑148 (MQ=255)
  tctcTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTTTTTTTAAAAAAAATTaaaaaa                                                                                                                                                    >  1:2086613/1‑148 (MQ=255)
  tctcTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTATTTataaaataaataaaataa                                                                                                                                                    >  1:2806791/1‑148 (MQ=255)
   ctctTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATATAAAAATTAAAATaaa                                                                                                                                                   >  2:1583694/1‑148 (MQ=255)
    tctTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATATGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAAATTATAAAATAATTAAAAGaata                                                                                                                                                  >  2:566854/1‑146 (MQ=255)
     ctTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATc                                                                                                                                                 <  2:2827121/148‑1 (MQ=255)
      tttttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCa                                                                                                                                                <  2:2145245/148‑1 (MQ=255)
      tttttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCa                                                                                                                                                <  2:3221629/148‑1 (MQ=255)
           ggAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACa                                                                                                                                           <  2:2027946/148‑1 (MQ=255)
                 tctcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTTTTTTTTAAAAAAATAAAAAAAAAAAAGaaaaaaacc                                                                                                                                     >  1:1122669/1‑143 (MQ=255)
                 tctcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTATTTATAAAATAAATAAAAAAAAAAAAGaaaaaaaac                                                                                                                                     >  1:2456290/1‑143 (MQ=255)
                   tcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAAAAATAAAGAAAATatagat                                                                                                                                   >  2:2371087/1‑143 (MQ=255)
                    cAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTAATTTTAAAATAATTAAAAGAAATaaataaaatatagaat                                                                                                                                  >  2:1973392/1‑142 (MQ=255)
                    cAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATg                                                                                                                                  <  2:2123809/148‑1 (MQ=255)
                     aaTTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGt                                                                                                                                 <  1:3627878/148‑1 (MQ=255)
                        tttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTaaa                                                                                                                              <  1:3498052/148‑1 (MQ=255)
                           aTGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCa                                                                                                                           <  1:3368352/148‑1 (MQ=255)
                                tCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTATTTATAAAAAAAATAAAAAAAAAAAAGAAAAAAACCATGTAAATCACAAAg                                                                                                                      >  1:640983/1‑148 (MQ=255)
                                       tCGGGGAATGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAt                                                                                                              <  2:2465463/148‑1 (MQ=255)
                                       tCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAt                                                                                                              <  2:831436/148‑1 (MQ=255)
                                        cGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAtt                                                                                                             <  1:877282/148‑1 (MQ=255)
                                            gAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTAAAAAAAAATTAAAAAAAAAAAAAAAAAAAACGATTTAAATAAAAAAATTTAAAtttagc                                                                                                         >  1:937472/1‑144 (MQ=255)
                                                gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTGAAAGAAAAAAAAACAATAGCGATGTTAATCACTAAGTTTAAAATTCGCGCCa                                                                                                     >  2:3468979/1‑148 (MQ=255)
                                                gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCa                                                                                                     <  2:2914064/148‑1 (MQ=255)
                                                gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCa                                                                                                     <  2:792584/148‑1 (MQ=255)
                                                   ataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTATTTTTTAAAATAATTAAAATTAATCAAGAAAAAAGAGATGGTAAGCACAAAGTTTTTATTTCGCGCGaaac                                                                                                  >  2:3321336/1‑146 (MQ=255)
                                                   ataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAAATCAAAGAAATAAAGAAAATAGAGCTGTTAATCACTAATTTTAAATTTGGCGGCaaaa                                                                                                  >  2:3649753/1‑146 (MQ=255)
                                                     agagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAATAAATCAATAAAAAAGCGATGTAAAGAACTAAGTTTAAATTGGGCGCCaataat                                                                                                >  2:2238064/1‑148 (MQ=255)
                                                              agcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTAATTTATTAAATAATTAAAATAAATAAAGAAAATATCGGAGTAAAGAACTAAGTTTTAAATTAGGGGCCAAACATggggggcc                                                                                        >  2:2263292/1‑142 (MQ=255)
                                                               gcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcaca                                                                                      <  1:1247150/148‑1 (MQ=255)
                                                                 aagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAATAATTAAAATAAAACAAGACAAAATCGAAGTTAATCAAAAAGTTTTAATTTGGCGCCCAACATTGCGCGCCCaaa                                                                                    >  2:2410644/1‑147 (MQ=255)
                                                                  agcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGc                                                                                   <  2:515741/148‑1 (MQ=255)
                                                                  agaatttatttGTAATTTATTTTTCGTTCGACATTTGCTTATACATAAAATTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATAAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCAAATCATGGCGCGCACAAGc                                                                                   <  1:3753456/145‑1 (MQ=255)
                                                                    caTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAAAAAATAAAATAAAAAAAAAAAATAAAGATGTAAATAAAAAAGTTTAAATTTAGCGCCAAACAAGGCGCGCACAAGCtc                                                                                 >  2:2906351/1‑147 (MQ=255)
                                                                    caTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAATAAAAAAAGAAAAAAACCATTTAAAACACAAAGTTTATATTTCGCGCCCAAAATTGCGCGCACAAGCta                                                                                 >  2:1558287/1‑148 (MQ=255)
                                                                    caTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAAAAATAAAAAAAAAAGCGCTGTAAAGCCCGAAGTTTTAAATGAGCGCCAAAGAAGGCGCGCACAAGcaa                                                                                 >  2:1558162/1‑146 (MQ=255)
                                                                    caTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAAATCAAATAAATAAAAAAAATAACGATTTAAAGCACAAAATTTAAATTTCGCGCCAAAAAAGGCGCGCACaaacaa                                                                                 >  2:1247584/1‑144 (MQ=255)
                                                                      tttatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAAAAATAAACACAATAAAGAAGTAAAAACAAAACTTTAAATTTGGCGCCAAACATTGCGCGCACAACCgata                                                                               >  2:354561/1‑148 (MQ=255)
                                                                      tttatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAAATAAAACAAATAAAAACAAAAAAGCAGTAAAGAAAAAACTTTATATTGCGCGCCAATAAATGCGCGCCCaaccaaaa                                                                               >  2:732576/1‑142 (MQ=255)
                                                                      tttatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTATTTATAAAATAATTCAAAAAAATAAAAAAAAAAGCGATTTAAATCACTAAGTTTAAATTTCGCGCCCATCATTGGGCGCACAAGCtaaa                                                                               >  2:3392720/1‑146 (MQ=255)
                                                                         atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAAAAAATAAAATAAAAAAAGACAAAATCGAAGTAAATAAAAAATTTTTAATTTAGCCCCAATAATTGCGCGCACAAGCGataata                                                                            >  2:2741406/1‑148 (MQ=255)
                                                                         atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAGAAATAAATACAAAAGCGATTTAAAGCACTAAGTTTAAAATTGGCGCCAATCATGGCGCGCACAAGCAataata                                                                            >  2:2239935/1‑148 (MQ=255)
                                                                             ggattttATTTTTCGTTCGACATTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAATTTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCaa                                                                        <  1:1272845/142‑1 (MQ=255)
                                                                              gAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAAATAAAATAAATAAAGAAAAAAGCGATGTAAAGCACTAAGTTTAAATTTCGCGCCCATCAAGGCGCGCCCAACCGCTAATACCAAc                                                                       >  2:2476365/1‑148 (MQ=255)
                                                                                     tttttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAAttt                                                                <  2:1927223/148‑1 (MQ=255)
                                                                                       tttCGTTCGACCTTTGCTTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTtct                                                              <  1:1905727/148‑1 (MQ=255)
                                                                                         tctttcgACCTTTGATTATAAATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATAAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcc                                                            <  2:1321986/145‑1 (MQ=255)
                                                                                         tcgttcgACCTTTGCTTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcc                                                            <  1:255912/148‑1 (MQ=255)
                                                                                         tcgttatACCTTTGATTATAAATAACTGTCTTTTTTTTAATTTATAAAATAATTAAAATAAATCAAGACAATAGCTATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcc                                                            <  1:2319246/148‑1 (MQ=255)
                                                                                           tttcgACATTTGATTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTAAAACAAAAAAAGAAAATAGCTATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctc                                                          <  1:1968950/147‑1 (MQ=255)
                                                                                           gttctACCTTTTCTTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTAAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctc                                                          <  1:3055164/148‑1 (MQ=255)
                                                                                           gttcgACCTTTGATTATAAATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATCGCGATGTAAAGCACTAATTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctc                                                          <  1:1967507/148‑1 (MQ=255)
                                                                                              cgACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                       <  1:2178014/148‑1 (MQ=255)
                                                                                                aCCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATTAAATAATTCAAAAAAAAAAAGACAAAATCGGTGTAAAACAATAAATTTAAATTTCGCGCCCAACAATGCGGGCCCAACCTATAATAACAACCTAATTTatgctccaatt                                                     >  2:120270/1‑144 (MQ=255)
                                                                                                 ccTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTGAAATAAATCAATAAAATAGAGATGTAAATCACTATGTTTAAATTTGGCGCCCATCAAGGCCCGCACCAGCTATAATACCAACCAAATTTATACACCTATTa                                                    >  2:2536279/1‑148 (MQ=255)
                                                                                                  cTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTAAAATAAATAAATACAAAATCGATGTAAATCAATAATTTTTAATTTCGCGCCAAACCTGGCGCGCACAAGCGATAATAACAAACGAATTTATCCTCCGCtttg                                                   >  2:3767403/1‑146 (MQ=255)
                                                                                                       cTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAGAAAAAAATACAATATCGGTGTAAAGAACTAAGTTTAAATTTCGCGCCAATAATTGCGCGCCCCACCAATAATAACAACCTAATTTATACTCCACTTATAGTgg                                              >  2:3481317/1‑147 (MQ=255)
                                                                                                       attATAAATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAATTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGa                                              <  1:1826564/147‑1 (MQ=255)
                                                                                                           taCATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAATAAATAAATACAAAATCGATTTAAATCACAAACTTTAAATTTCGCGCCAAAAATGGCGCGCACAAACAATAATAACAACCAAAATTATCCAACCCTTAGAGGGACtat                                          >  2:3170997/1‑148 (MQ=255)
                                                                                                            aCATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACtata                                         <  2:3096543/148‑1 (MQ=255)
                                                                                                                aaCAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtctc                                     <  2:1420200/148‑1 (MQ=255)
                                                                                                                  cAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATAAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCt                                   <  1:3653634/148‑1 (MQ=255)
                                                                                                                        tttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATCGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGa                             <  1:2775051/148‑1 (MQ=255)
                                                                                                                        tttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGa                             >  1:2870962/1‑148 (MQ=255)
                                                                                                                        tttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGa                             <  2:2759752/148‑1 (MQ=255)
                                                                                                                         tattttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCACCCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGaa                            <  2:3792037/146‑1 (MQ=255)
                                                                                                                              tAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTgag                       >  2:81198/1‑146 (MQ=255)
                                                                                                                                aTTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGt                     >  2:697660/1‑148 (MQ=255)
                                                                                                                                 tttATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTa                    <  1:1575097/148‑1 (MQ=255)
                                                                                                                                 tttATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTa                    <  2:1798350/148‑1 (MQ=255)
                                                                                                                                  ttATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTAt                   <  1:102838/148‑1 (MQ=255)
                                                                                                                                  ttATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTAt                   >  1:270083/1‑148 (MQ=255)
                                                                                                                                  ttATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTAt                   >  1:468953/1‑148 (MQ=255)
                                                                                                                                     taAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGa                >  2:1728843/1‑148 (MQ=255)
                                                                                                                                     taAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGa                >  2:3506345/1‑148 (MQ=255)
                                                                                                                                      aaaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTATGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGAc               <  1:3228695/148‑1 (MQ=255)
                                                                                                                                        aataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa             >  1:2484766/1‑148 (MQ=255)
                                                                                                                                        aataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAAGCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa             <  2:468953/148‑1 (MQ=255)
                                                                                                                                         ataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTAt            >  1:2762692/1‑148 (MQ=255)
                                                                                                                                          taatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATc           >  2:932872/1‑148 (MQ=255)
                                                                                                                                           aatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCa          <  1:89891/148‑1 (MQ=255)
                                                                                                                                           aatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCa          >  2:532571/1‑148 (MQ=255)
                                                                                                                                            atTCAAAGAAATCAAGACAATCGCGATGTAAAGCACTAAGTTTAAATGGCGCGCCAATCTGGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa         <  1:1017351/148‑1 (MQ=255)
                                                                                                                                            atTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa         <  2:392767/148‑1 (MQ=255)
                                                                                                                                             ttCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaaa        >  2:3316143/1‑148 (MQ=255)
                                                                                                                                              tCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCACTCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGACTTGCGGTATTGACTATCaact       >  2:2163391/1‑146 (MQ=255)
                                                                                                                                              tCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAAt       >  2:3192339/1‑148 (MQ=255)
                                                                                                                                              tCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAAt       >  2:3057880/1‑148 (MQ=255)
                                                                                                                                                aaggAATTCAAGACAATAGCGATGTACAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGc     <  2:2634925/145‑1 (MQ=255)
                                                                                                                                                aaaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGc     <  1:709535/148‑1 (MQ=255)
                                                                                                                                                 aaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGcc    >  1:2571824/1‑148 (MQ=255)
                                                                                                                                                 aaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGcc    >  1:2408172/1‑148 (MQ=255)
                                                                                                                                                 aaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGcc    <  2:648341/148‑1 (MQ=255)
                                                                                                                                                 aaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGcc    <  1:3389125/148‑1 (MQ=255)
                                                                                                                                                  aGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCACTCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGccc   >  1:26975/1‑148 (MQ=255)
                                                                                                                                                  aGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGccc   >  2:1378879/1‑148 (MQ=255)
                                                                                                                                                  aGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGccc   <  1:183887/148‑1 (MQ=255)
                                                                                                                                                  aGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGccc   >  1:1610563/1‑148 (MQ=255)
                                                                                                                                                  aGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGccc   >  2:2077164/1‑148 (MQ=255)
                                                                                                                                                   gAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCt  <  2:858403/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
TATCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCT  >  CP009273/2463763‑2464057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: