Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 235,005 C→A 14.4% T73T (ACG→ACT) ‡ ykfM ← lethality reduction protein, putative inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273235,0050CA14.4% 699.1 / 23.0 324T73T (ACG→ACT) ‡ykfMlethality reduction protein, putative inner membrane protein
Reads supporting (aligned to +/- strand):  ref base C (110/150);  new base A (60/2);  total (170/154)
Fisher's exact test for biased strand distribution p-value = 4.54e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 327 total aligned reads displayed.

ATTAGTATTGACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTG  >  CP009273/234858‑235152
                                                                                                                                                   |                                                                                                                                                    
aTTAGTATTGACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATc                                                                                                                                                      <  1:3253128/148‑1 (MQ=255)
 ttAGTATTGACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCg                                                                                                                                                     >  2:514608/1‑148 (MQ=255)
  tAGTATTGACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATTATTTTATTATCgt                                                                                                                                                    >  2:3401065/1‑148 (MQ=255)
  tAGTATTGACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCgt                                                                                                                                                    <  2:2502925/148‑1 (MQ=255)
   aGTATTGACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATAgta                                                                                                                                                   >  1:3370033/1‑148 (MQ=255)
    gTATTGACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCgtaa                                                                                                                                                  <  1:2118881/148‑1 (MQ=255)
      aTTGACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCgtaagt                                                                                                                                               <  2:1654539/148‑1 (MQ=255)
       ttGACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCgtaagta                                                                                                                                              <  2:2910617/148‑1 (MQ=255)
         gACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTaaa                                                                                                                                            <  1:1099534/148‑1 (MQ=255)
         gACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTaaa                                                                                                                                            <  2:251904/148‑1 (MQ=255)
          aCATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTaaaa                                                                                                                                           <  1:1769434/148‑1 (MQ=255)
             tatCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTa                                                                                                                                        <  2:3513510/148‑1 (MQ=255)
              atCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTAc                                                                                                                                       <  1:2813599/148‑1 (MQ=255)
               tCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGTTTAAGAATTATTTTATTATAGTAAGTAAAATTaaa                                                                                                                                      >  1:2958703/1‑146 (MQ=255)
               tCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACa                                                                                                                                      <  2:2252760/148‑1 (MQ=255)
                  tgtgACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTTTTTTAGAATTATTTTTTTATATTAATTAAAAtaaaatta                                                                                                                                   >  1:1002281/1‑141 (MQ=255)
                  tgtgACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAATAATTATTTTATTATAGTAAGTAAAATTAAAtta                                                                                                                                   >  1:613346/1‑146 (MQ=255)
                    tgACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAat                                                                                                                                 <  2:648424/148‑1 (MQ=255)
                     gACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAata                                                                                                                                <  2:1569501/148‑1 (MQ=255)
                     gACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAata                                                                                                                                <  2:1935442/148‑1 (MQ=255)
                      aCAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAATAATGATTTTATTATAGTAAGTAAAATTAAATTAatat                                                                                                                               >  1:642187/1‑148 (MQ=255)
                      aCAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATAGTAAGTAAAATTAAATTAatat                                                                                                                               >  2:2882142/1‑148 (MQ=255)
                       cAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATAtt                                                                                                                              <  2:3051447/148‑1 (MQ=255)
                       cAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATAtt                                                                                                                              >  2:60678/1‑148 (MQ=255)
                         aaaGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATAGTAATTAAAATTAAATGAATATTTa                                                                                                                            >  1:3406018/1‑148 (MQ=255)
                          aaGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTaa                                                                                                                           >  2:1942697/1‑148 (MQ=255)
                           aGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTaaa                                                                                                                          <  1:2617488/148‑1 (MQ=255)
                             gAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATAGTAAGTAAAATTACATGAATATTTaaaaa                                                                                                                        >  1:1246072/1‑148 (MQ=255)
                               gCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAgg                                                                                                                      <  2:151872/148‑1 (MQ=255)
                               gCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAgg                                                                                                                      <  2:1186586/148‑1 (MQ=255)
                                cTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGa                                                                                                                     <  1:169053/148‑1 (MQ=255)
                                cTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGa                                                                                                                     <  2:3344575/148‑1 (MQ=255)
                                  aTTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGaaa                                                                                                                   <  1:182238/148‑1 (MQ=255)
                                     aaaGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTTTTTTATAATTATTTTATTATATTAAGTAAAAATAAAATAATAattaaaaattaaaaaa                                                                                                                >  1:1681955/1‑146 (MQ=255)
                                        ggTGCTATTACTATAGCATTTTGTAAAAATATAAGATTTAGCTTTTTTGTTATGTGTGTGGCTAAATTGACTACCTTCGTTTTTTTGATTAATAATTATTTTATTATCGTATTTAAAATTACATTAATATTTAAAAAGGAAAACGACa                                                                                                             <  2:2329367/148‑1 (MQ=255)
                                        ggTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCTTTTTTTTTATTAAGAATTATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACa                                                                                                             <  2:2742908/148‑1 (MQ=255)
                                        ggTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGTTTTAGAATTATTTTATTATAGTAAGTAAAATTAAATTAAAATTTAAAAATGAAAAAGaaa                                                                                                             >  1:76122/1‑146 (MQ=255)
                                            ttATTACGATATGTATTAGTAAAAATATAAGTGTTAGCTGTTTTGTTATGTCTGTGGCGAATTTGACTACCTTCGTTTTTTTTATTAATATTGATTTTATTATCGTATGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGaa                                                                                                         <  2:3234446/147‑1 (MQ=255)
                                              aTTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTTTTTAATAATTATTTTTTTATAGTAAGTTAAAATAAAATAAAAATTTAAAAAGAAAACGACaataaaa                                                                                                       >  1:2566341/1‑142 (MQ=255)
                                                          aTTAGTAAAAATATAAGATTTTGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAATAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGaa                                                                                           <  2:932568/148‑1 (MQ=255)
                                                             aGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAAAGACATGAAACCGAAGCACAGaaaaa                                                                                        >  1:889770/1‑145 (MQ=255)
                                                              gTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAATGAAAAAGACATGAAACCCAAGCACAGAATCaa                                                                                       >  2:2689743/1‑148 (MQ=255)
                                                                aaaaaTATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTTATTAAGAATTATTTTATTTTATTAAATAAAATTAAAAGAAAATTTAAAAATGAAAACGACATTAAAAAGAAGCACAGAAacaaca                                                                                     >  1:1392856/1‑148 (MQ=255)
                                                                  aattataAGATTTAGCTTTATTTTTATGTCTGTGGCGAAATTGAATACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACAtt                                                                                   <  2:1765759/145‑1 (MQ=255)
                                                                  aaaTATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGTTTAAGAATGATTTTATTATAGTAAGTAAAATTACATGAATATTTTAAAATGAAAAAGACATGAAAACGAAGCACAGAATCAACAtt                                                                                   >  1:840893/1‑148 (MQ=255)
                                                                    atatAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATTATTTTATTATCGTAAGTAAAATTAAATGAATATTTAAAAAGGAAAAAGACATGAAAACGAAGCACAGAAACAACAAtct                                                                                 >  1:3117689/1‑148 (MQ=255)
                                                                       taATAGTTAGATTTTTTGTTTTGTCTGTGGCGAAATTGACTACTTTCTTTTTTTTTATTAACAATGATTTTTTTATCTTAATAAAAATTACATCAATATTAAAAAAGCAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCa                                                                              <  1:3066498/148‑1 (MQ=255)
                                                                       taAGAGTTAGCTTTATTTTTATGTCTGTGGCTAATTTGACTACCTTCTTTTTTTTTATTAATAATGATTTTATTATCGTAAGTAAAATTACATTAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCa                                                                              <  2:137520/148‑1 (MQ=255)
                                                                        aaGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATTATTTTATTATCGTAAGTAAAAATACATGAATATTTAAAAAGGAAAACGACATGAAAACCAAGCACAGAAAAAACATTCTCCaa                                                                             >  2:1432705/1‑148 (MQ=255)
                                                                         cgagTTAGGTGTATTGTTATGTCTGTGGCTAATTTTACTACCTTCGTTTTTTTGATTAAGATTTATTTTATTATCTTAATTAAAATTAAATTAATATTTAAAAAGCAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAAt                                                                            <  1:3774602/147‑1 (MQ=255)
                                                                         agtgTTAGCTGTTTTGTTTTTTGTGTGGCTAAATTTACTACCTTGTTTTTTTTGATTAAGAATTATTTTATTATCTTAAGTAAAATTAAATGAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAAt                                                                            <  2:398801/145‑1 (MQ=255)
                                                                          gagTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTAAATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATc                                                                           >  2:352680/1‑148 (MQ=255)
                                                                          gagTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTATTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATc                                                                           >  2:1485178/1‑148 (MQ=255)
                                                                           agTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTAAATGAATATTTAAAAAGGAAAACGAAATGAAACCGAAGCACAGAATCAAAATTCTACAATCa                                                                          >  2:3062368/1‑148 (MQ=255)
                                                                             ttatatttATTTTTATGTCTGTGGAGAAATTGACTACCTTCTTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATTAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATa                                                                        <  2:2791336/141‑1 (MQ=255)
                                                                             ttAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTGTTTTTGATTAAGAATGATTTTATTATAGTAAGTAAAATTAAATGAATATTTAAAAATGAAAAAGACATGAAACCGCAGCACAGAATCAACATTCTCCAATCaaa                                                                        >  1:2464854/1‑146 (MQ=255)
                                                                                gCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATAATaaaa                                                                     >  2:2395625/1‑148 (MQ=255)
                                                                                         ttttGTCTGTGGCTAATTTGACTACATTCGTTTTTTTGATTAATATTGATTTTTTTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGt                                                            <  2:806967/145‑1 (MQ=255)
                                                                                         ttATGTCTGTGGCTAATTTGACTACCTTCTTTTTTTTTATTAATAATTATTTTATTATCGTAATTAAAATTACATGAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGt                                                            <  2:3590035/148‑1 (MQ=255)
                                                                                         ttATGTCTGTGGCTAAATTGACTACCTTCGTTTTTTTGATTAAGAATTATTTTATTATCTTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGt                                                            <  2:265595/148‑1 (MQ=255)
                                                                                           ttgtgtgtgGCTAAATTGACTACCTTGTTTTTTTTGATTAATATTTATTTTATTATCTTAATAAAATTTACATTAATATTAAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTgg                                                          <  1:2733051/147‑1 (MQ=255)
                                                                                           aTGTCTGTGGCGAAATTGACTACCTTCGTGTTTTTGTTTAAGAATGATTTTATTATCGTAATTAAAAATAAATTGATATTTAAAAAGGAAAAAGACCTGGAACCCAAGCACAGAAACAACAATCTACAAAAAAAAAATATTTACGTgg                                                          >  1:521592/1‑148 (MQ=255)
                                                                                                tgtgGCTAAATTGACTACCTTCTTTTTTTTTATTAATAATTATTTTATTATCTTAATTAAAATTACATGAATATTTAAAAAGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCAt                                                     <  2:1288913/148‑1 (MQ=255)
                                                                                                 gtgGCTAAATTGACTACCTTCGTTTTTTTCATTAAGAATGATTTTATTATCGTAATTAAAATTAAATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCAtt                                                    <  1:1285897/148‑1 (MQ=255)
                                                                                                     ctaaaTTGACTACCTGCGTTTTTTTTATAAAGAATTTTTTTATTATCGAAAGTAAAATTAATTTAATATTAAAAAAGCAACACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTttat                                                <  1:2684828/146‑1 (MQ=255)
                                                                                                     cGAAATTGACTACCTTCGTTTTTTTGTTTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTttat                                                >  1:3503167/1‑148 (MQ=255)
                                                                                                          ttGACTACCTTGTTTTTTTTTATTAATATTGATTTTATTATCGTAAGAAAAATTACATTAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTg                                           <  1:1837576/148‑1 (MQ=255)
                                                                                                           tGACTACCTTCGTTTTTTTGATTAAGAAAGTTTTTATTATAGTAAGAAAAATTACAAGAAAATTTAAAAATGAAAACGACATGAAACCCAACCACAGAAACAACAATAACCAAACAAAAAAAATTTCCGTGGAGCATTTTattattta                                          >  1:1895362/1‑146 (MQ=255)
                                                                                                            gACTACCTTCGTTTTTTTGTTTAAGAATGATTTTATTATAGTAAGTAAAATTACAAGAATATTTAAAAAGGAAAAAGACAAGAAAACGAAGCACAGAATCAACATTATCCAATCAAAAAATATTTCCGTGGAGCATTTTATTATTGaa                                         >  1:2202030/1‑148 (MQ=255)
                                                                                                             aCTACCTTCTTTTTTTTGATTAAGAATTATTTTATTATCGTAATTAAAATTACATTAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAat                                        <  2:2599070/148‑1 (MQ=255)
                                                                                                             aCTACCTTCGTTTTTTTGTTTAAGAATGATTTTATTATCGTAAGTAAAATTAAATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATAAACATTATCCAATCATAAAATATTTACGTGGAGCATTTTATTATTGAat                                        >  2:126294/1‑148 (MQ=255)
                                                                                                             aCTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAat                                        >  2:1119803/1‑148 (MQ=255)
                                                                                                              cTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAAAAATCTCCAATCATAAAATATTTACGTGGAGCATTTTATTATTGAata                                       >  2:897339/1‑148 (MQ=255)
                                                                                                                 cattCGTTTTTTTGATTAATAATTATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATag                                    <  2:2534216/146‑1 (MQ=255)
                                                                                                                   ttCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCTAAGCACAGAATCAACATTCTCCAATCAAAAAATATTTCAGTGGAGCATTTTATTATTGAATATagag                                  >  2:3765085/1‑148 (MQ=255)
                                                                                                                   ttCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATagag                                  >  2:711001/1‑148 (MQ=255)
                                                                                                                   ttCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATagag                                  >  2:1876205/1‑148 (MQ=255)
                                                                                                                    tttttttttttATAAATATTTATTTTATTAACTAAATTAAATTTAAATTAATATTAAAAAAGCAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAgg                                 <  1:3641340/145‑1 (MQ=255)
                                                                                                                     cGTTTTTTTGATTAAGAATTATTTTATTATCGTAATTAAAATTAAATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGt                                <  2:3083126/148‑1 (MQ=255)
                                                                                                                     cGTTTTTTTGATTAAGAATTATTTTATTATCGTAAGTAAAATTACATTAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGt                                <  2:3274716/148‑1 (MQ=255)
                                                                                                                     cGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCAGTGGAGCATTTTATTATTGAATATAGAGGt                                >  2:2672647/1‑148 (MQ=255)
                                                                                                                      tttttttttATTAATAATTATTTTATTATCTTAATTAAATTTACATTAATATTTAAAATGTAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGtt                               <  1:2381590/147‑1 (MQ=255)
                                                                                                                        ttttttGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTa                             >  1:2304687/1‑148 (MQ=255)
                                                                                                                        ttttttGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTa                             >  1:2928251/1‑148 (MQ=255)
                                                                                                                                ttAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGt                     >  2:957714/1‑148 (MQ=255)
                                                                                                                                 tAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTa                    >  1:3736097/1‑148 (MQ=255)
                                                                                                                                     aaTGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTaaaaa                >  1:2007588/1‑148 (MQ=255)
                                                                                                                                     aaTGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTaaaaa                >  1:2509892/1‑148 (MQ=255)
                                                                                                                                      atttttttATTATCTTAATTAAAATAAAATTAATTTTAAAAATGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTaaaaaa               <  1:400908/144‑1 (MQ=255)
                                                                                                                                        taTTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACa             <  2:1985862/147‑1 (MQ=255)
                                                                                                                                        gATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACa             <  2:578921/148‑1 (MQ=255)
                                                                                                                                          ttttATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACaaa           >  1:1951500/1‑148 (MQ=255)
                                                                                                                                           tttATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAaag          >  1:147289/1‑148 (MQ=255)
                                                                                                                                             tattatCTTAATTAAAATTAAATTAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAaagaa        <  2:3657808/148‑1 (MQ=255)
                                                                                                                                             tattatCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAaagaa        >  2:47180/1‑148 (MQ=255)
                                                                                                                                              attatCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAaagaag       >  2:1035382/1‑148 (MQ=255)
                                                                                                                                                tatCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCa     >  1:1536894/1‑148 (MQ=255)
                                                                                                                                                 atCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCAt    >  2:684083/1‑148 (MQ=255)
                                                                                                                                                  tCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACAGGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCAtt   >  2:2982176/1‑148 (MQ=255)
                                                                                                                                                   cGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACCGAATCAACATTCTCCAATCAAAAAATATTTCCGTGGAGCATTTTATAATTGAATATAGAGGTTTAACTCAGGTAAAAACAAAAGAAGCATTg  >  2:512732/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
ATTAGTATTGACATATCCTGTGACAAAAGGAGCTATTAAAGGTGCTATTACGATAGCTATTAGTAAAAATATAAGAGTTAGCTGTATTGTTATGTCTGTGGCGAAATTGACTACCTTCGTTTTTTTGATTAAGAATGATTTTATTATCGTAAGTAAAATTACATGAATATTTAAAAAGGAAAACGACATGAAACCGAAGCACAGAATCAACATTCTCCAATCATAAAATATTTCCGTGGAGCATTTTATTATTGAATATAGAGGTTTAACTCCGGTAAAAAACAAAGAAGCATTG  >  CP009273/234858‑235152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: