| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,974,073 | C→T | 100% | intergenic (‑79/+50) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,974,073 | 0 | C | T | 98.5% | 618.3 / ‑0.3 | 197 | intergenic (‑79/+50) | ygeA/araE | Asp/Glu_racemase family protein/arabinose transporter |
| Reads supporting (aligned to +/- strand): ref base C (1/2); new base T (107/86); total (108/89) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.89e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 203 total aligned reads displayed.
TTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAG > CP009273/2973928‑2974217 | ttATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAAtttc < 1:257584/148‑1 (MQ=255) tATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATttct < 2:2316617/148‑1 (MQ=255) tATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATttct < 2:1958294/148‑1 (MQ=255) aTCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTa < 2:1224098/148‑1 (MQ=255) aTCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTa > 2:873968/1‑148 (MQ=255) aTCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTa < 2:1732762/148‑1 (MQ=255) aTCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTa < 2:1482840/148‑1 (MQ=255) aTCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCACCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTa < 1:2341777/148‑1 (MQ=255) tCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTAt < 2:2653732/148‑1 (MQ=255) acAATCGATAGTAAGGATTGGTGGATTCCCTGCTCATTCCTCCCAGAAAACCAATTGTTTTCATTCCTCTCTCCTGTTGTGTGTTACCGCAACATGGCTTAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTAt < 1:1821238/147‑1 (MQ=255) aaaCGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTa > 1:317146/1‑148 (MQ=255) cGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACg > 1:2623363/1‑148 (MQ=255) ttttgTAAGGAATGGTGGATTCCCAGCTAATTCCTCCCAGCAAACAAATTTTTTTAATTCCTCTCTCCTTTTGTGTGTTACCGAAACAAGGCTTAATAAGGAACCATAAAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑a < 1:1295737/144‑1 (MQ=255) aTAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑aa < 1:125039/148‑1 (MQ=255) aTAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑aa > 1:487201/1‑148 (MQ=255) tAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑aaa > 2:795554/1‑148 (MQ=255) tAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑aaa > 2:1268139/1‑148 (MQ=255) ttAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCACTTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑aaaaa < 2:2640757/147‑1 (MQ=255) gTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑aaaaa < 1:1242684/148‑1 (MQ=255) aaGTAATGGTGTTTTCCCAGCTCATTCCTCCCAGCAAACCATTTGTTTTCATTCCTCTCTCCTTATGTGTGTTACCGCAACAAGGCTTAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAg < 1:2913951/148‑1 (MQ=255) ggATTGGTGGATTCCCAGCTAATTCCTCCCAGCAAACCATTTGTTTTAATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAggg < 1:727064/148‑1 (MQ=255) ggAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAggg > 1:1989076/1‑148 (MQ=255) ggAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAggg > 2:3193530/1‑148 (MQ=255) gtaTGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACT‑AAAAAAGGGc < 2:3476678/146‑1 (MQ=255) aaTGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGcc > 2:2415919/1‑148 (MQ=255) tggATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATg > 2:1368404/1‑148 (MQ=255) tCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAg > 1:2324731/1‑148 (MQ=255) cAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGcac > 2:1323398/1‑148 (MQ=255) tCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCACGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGCTGTCCAGCACATcc > 1:2267446/1‑148 (MQ=255) tCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATcc > 1:1271191/1‑148 (MQ=255) tcctccCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGcc < 2:1841583/148‑1 (MQ=255) cAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaa > 2:644159/1‑148 (MQ=255) aGCAACCCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTTAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa < 2:2887204/148‑1 (MQ=255) cAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATc > 2:2497454/1‑148 (MQ=255) aaCCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAg < 2:3292213/148‑1 (MQ=255) aaCCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAg > 2:484622/1‑148 (MQ=255) aTTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGcc > 1:134296/1‑148 (MQ=255) tGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGa > 2:780870/1‑148 (MQ=255) ttttCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGata > 1:710357/1‑148 (MQ=255) tttCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGatat > 1:2143661/1‑148 (MQ=255) tCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAttt > 1:3517769/1‑148 (MQ=255) aTTCCTCTCTCCTGATGTGTGTTACCGAAACAAGGCTTAATATGTAACGACACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtct < 1:3274281/148‑1 (MQ=255) ttCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtctc > 1:613599/1‑148 (MQ=255) tCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCa > 1:3810621/1‑148 (MQ=255) tCCTCTCTCCTGATGAGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCa > 2:1192373/1‑148 (MQ=255) ctctcCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACtt > 1:301728/1‑148 (MQ=255) ccTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCg < 2:217214/148‑1 (MQ=255) tGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGcc < 2:1598233/148‑1 (MQ=255) tGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGcc > 1:774120/1‑148 (MQ=255) tGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGcc > 1:1239601/1‑148 (MQ=255) gATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCt > 1:1910236/1‑148 (MQ=255) gtgtgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc > 2:3384983/1‑148 (MQ=255) gtgtgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc > 2:3384555/1‑148 (MQ=255) gtgtgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc > 1:1760952/1‑148 (MQ=255) tgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATc > 1:1013328/1‑148 (MQ=255) gtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCACAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCa < 1:1559776/148‑1 (MQ=255) ttACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAg > 1:2640318/1‑148 (MQ=255) aCCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTCTTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGtt < 2:492759/148‑1 (MQ=255) aCCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGtt < 2:259293/148‑1 (MQ=255) aCCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGtt < 2:557702/148‑1 (MQ=255) acaaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGtt > 1:3765530/1‑148 (MQ=255) caaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 2:1805861/1‑148 (MQ=255) caaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 2:1754816/1‑148 (MQ=255) caaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 2:2766734/1‑148 (MQ=255) aGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGa < 1:2495667/148‑1 (MQ=255) aGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGa < 1:1268139/148‑1 (MQ=255) ggCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGat > 1:848239/1‑148 (MQ=255) gCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGata > 2:3537550/1‑148 (MQ=255) tGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATg < 2:3743517/148‑1 (MQ=255) gAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGt > 1:1975839/1‑148 (MQ=255) aTAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTc > 2:141958/1‑148 (MQ=255) aGGAACGAGACAAACGCCACAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAg < 2:408372/148‑1 (MQ=255) ggAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGc > 1:2977812/1‑148 (MQ=255) ggAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGc > 1:3800620/1‑148 (MQ=255) agaCAAACGCCTCACCGGCCAAGTGCCCAATTTCTATAAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACa < 1:1964088/148‑1 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAtt < 1:952898/148‑1 (MQ=255) cAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAttt < 2:443605/148‑1 (MQ=255) cAAACGCCTCAACGGCCAAGGGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAttt < 1:1035912/148‑1 (MQ=255) aCGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTg > 1:331338/1‑148 (MQ=255) aCGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTg < 2:1557030/148‑1 (MQ=255) aCGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTg > 1:382847/1‑148 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTgg < 1:3072255/148‑1 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTgg > 1:711162/1‑148 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTgg > 1:711924/1‑148 (MQ=255) ccTCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGtt < 1:1323398/148‑1 (MQ=255) tCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACCTTTTTGGttt > 2:2917416/1‑148 (MQ=255) tCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTc > 2:3168610/1‑148 (MQ=255) tCAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTc > 2:3173232/1‑148 (MQ=255) cAACGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCCTCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTcc > 2:2737816/1‑148 (MQ=255) cGGCCAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGa < 1:1537156/148‑1 (MQ=255) ccAAGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATg < 2:2977986/148‑1 (MQ=255) ccAAGTGCCCAATTTCTATGAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATg < 2:2279832/148‑1 (MQ=255) ccAAGGGCCCAATGTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATg < 2:2059688/148‑1 (MQ=255) aaGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAg > 1:744662/1‑148 (MQ=255) aaGTGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAg < 2:1271191/148‑1 (MQ=255) aGTGCCCAAGTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGc < 2:11044/148‑1 (MQ=255) tGCCCAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCa > 2:2698908/1‑148 (MQ=255) ccAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGaa < 2:2081687/148‑1 (MQ=255) cAATTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGaaa < 2:3810925/148‑1 (MQ=255) aaTTTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAg > 2:3764852/1‑148 (MQ=255) | TTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAG > CP009273/2973928‑2974217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |