| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,260,998 | G→T | 18.2% | intergenic (+41/‑215) | tdcR → / → yhaB | L‑threonine dehydratase operon activator protein/uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,260,998 | 0 | G | T | 18.2% | 1027.1 / 145.1 | 366 | intergenic (+41/‑215) | tdcR/yhaB | L‑threonine dehydratase operon activator protein/uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base G (175/124); new base T (34/33); total (209/157) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
Only 100 of 367 total aligned reads displayed.
ATTTTAAAATTTCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGGATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTGATA > CP009273/3260851‑3261144 | atTTTAAAATTTCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTg < 2:1765226/148‑1 (MQ=255) tttAAAATTTCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAg > 1:608390/1‑148 (MQ=255) tAAAATTTCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAgaa < 1:1443736/148‑3 (MQ=255) tttCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATcaca > 2:3632436/1‑148 (MQ=255) ttCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACaa > 2:1717215/1‑148 (MQ=255) ttCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACaa > 2:1355597/1‑148 (MQ=255) aTACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGa < 2:1839898/148‑1 (MQ=255) aTACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGa < 2:1917053/148‑1 (MQ=255) aTACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGa > 2:228863/1‑148 (MQ=255) tACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaa > 1:2937460/1‑148 (MQ=255) tACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaa > 2:71848/1‑148 (MQ=255) aCATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaat < 1:1757556/148‑1 (MQ=255) aCATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaat < 1:698208/148‑1 (MQ=255) cATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaata < 1:2507791/148‑1 (MQ=255) aTGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaataa < 2:1789098/148‑1 (MQ=255) tGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaataat < 2:1993955/148‑1 (MQ=255) tGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaataat > 1:262426/1‑148 (MQ=255) tGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCATCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaataat < 2:2628445/148‑1 (MQ=255) tGTAATGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGGCATTTTGTGAATGCAATCGTTTTCAATAAATTCTTCTCCCCTCATAGGCGACGAATAGAA‑TTTTTGGTTGATAATCACAAAACtaataaa > 2:2837668/1‑147 (MQ=255) tATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCATTTTTGTGTTGAGAATCACAAAACGAATAAtt > 1:1042421/1‑148 (MQ=255) aTTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGc > 1:2322361/1‑148 (MQ=255) aTTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGc > 1:20661/1‑148 (MQ=255) ttGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCt > 1:3205764/1‑148 (MQ=255) tGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTg < 1:3769740/148‑1 (MQ=255) catcTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGGATCACAAAACGAATAATTGCTGATcg > 2:390755/1‑148 (MQ=255) tctcGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCAGTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATcgcc > 1:459110/1‑148 (MQ=255) ctcGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATcgccg > 2:3762950/1‑148 (MQ=255) gAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGa < 1:1204940/148‑1 (MQ=255) aaCAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGAt > 1:10289/1‑148 (MQ=255) aaTTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAg > 1:917005/1‑148 (MQ=255) aaTTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAg > 1:2528283/1‑148 (MQ=255) aTTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAgg > 2:2940335/1‑148 (MQ=255) ttGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGt > 1:2868797/1‑148 (MQ=255) tGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTc > 1:678980/1‑148 (MQ=255) aTTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCag > 2:1167577/1‑148 (MQ=255) ttAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCaga > 2:275582/1‑148 (MQ=255) cGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCagacaaa > 1:178228/1‑148 (MQ=255) gTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCagacaaag < 2:138360/148‑1 (MQ=255) aCTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCagacaaagacaa > 1:2596143/1‑148 (MQ=255) tttttCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGacaaca < 1:746553/148‑1 (MQ=255) ttttCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGAcaacaa > 2:2515328/1‑148 (MQ=255) tttCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAg < 2:1926615/148‑1 (MQ=255) ttCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAgg > 1:1102628/1‑148 (MQ=255) ttctGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAAt < 1:2029098/148‑1 (MQ=255) ttctGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAAt < 2:536289/148‑1 (MQ=255) ttctGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAAt < 2:615839/148‑1 (MQ=255) gACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTc < 2:2425874/148‑1 (MQ=255) gACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTc > 2:3375932/1‑148 (MQ=255) cAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTcac < 2:880290/148‑1 (MQ=255) ggACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACag < 1:3437896/148‑1 (MQ=255) ggACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACag > 1:1482703/1‑148 (MQ=255) gTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCt < 1:2317930/148‑1 (MQ=255) gTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCt < 1:590197/148‑1 (MQ=255) ttttGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTg < 2:63268/148‑1 (MQ=255) tttGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGa > 1:1681223/1‑148 (MQ=255) aaTCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAAGTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGc < 2:2313723/148‑1 (MQ=255) tCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCca > 2:362379/1‑148 (MQ=255) cGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCcac > 2:1577149/1‑148 (MQ=255) cGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCcac > 1:2666389/1‑148 (MQ=255) tttCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGa > 1:875591/1‑148 (MQ=255) tttCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGa < 1:1152631/148‑1 (MQ=255) tttCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGa > 2:3229952/1‑148 (MQ=255) ttCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGaa < 2:170390/148‑1 (MQ=255) aTAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGtt > 2:367453/1‑148 (MQ=255) aaaTTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGc < 2:1071210/148‑1 (MQ=255) ttcttcTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAACTTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTc > 1:3316711/1‑148 (MQ=255) tctcCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGttt < 1:3632321/148‑1 (MQ=255) tctcCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGttt < 1:2116300/148‑1 (MQ=255) tcCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTAc < 1:1801908/148‑1 (MQ=255) tcCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTAc < 1:1559632/148‑1 (MQ=255) ccccTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACt < 1:3136583/148‑1 (MQ=255) cccTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTg > 1:2152247/1‑148 (MQ=255) ccTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGt < 2:267047/148‑1 (MQ=255) cTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTa < 2:256384/148‑1 (MQ=255) cATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAAc > 1:3653904/1‑148 (MQ=255) cATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAAc > 1:2746134/1‑148 (MQ=255) aTAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACg > 2:844877/1‑148 (MQ=255) tAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGc > 1:2578996/1‑148 (MQ=255) tAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGc > 1:659183/1‑148 (MQ=255) ggCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCg > 2:1207983/1‑148 (MQ=255) gacgaATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGt < 2:773123/148‑1 (MQ=255) acgaATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTa > 1:84721/1‑148 (MQ=255) cgaATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTaa < 1:1355597/148‑1 (MQ=255) cgaATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTaa < 2:3080031/148‑1 (MQ=255) tAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAAGTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGa < 2:2382944/148‑1 (MQ=255) aGCA‑TTTTGTGTTGAGGATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAg > 1:2426541/1‑148 (MQ=255) aGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATAGCTGATCGCCGCGATAAGGTCAGAAAAAGAAAACAATGTAAATTTTCACAGAGATTTTGATCTTCGTAGTCCACAGAATGTTGATTCGTTTAATGTAACTCCGGGTAAAagag > 2:3590121/1‑148 (MQ=255) cA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCg > 2:925847/1‑148 (MQ=255) cA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCg < 1:280740/148‑1 (MQ=255) cA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCg > 2:1026183/1‑148 (MQ=255) ttttGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGtt > 1:2958724/1‑148 (MQ=255) ttttGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGtt > 1:3545363/1‑148 (MQ=255) ttGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGtttt < 2:2165322/148‑1 (MQ=255) ttGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGtttt < 2:2072476/148‑1 (MQ=255) tgtTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTg < 2:3353801/148‑1 (MQ=255) tgtTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTg < 1:1716083/148‑1 (MQ=255) gtTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTGa < 1:636108/148‑1 (MQ=255) ttGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTGAt < 1:350981/148‑1 (MQ=255) tGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTCAATGAGCGTTTTTTGATa > 2:3040606/1‑148 (MQ=255) tGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTGATa < 2:3535178/148‑1 (MQ=255) | ATTTTAAAATTTCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGGATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTGATA > CP009273/3260851‑3261144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |