| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,299,240 | A→C | 100% | intergenic (‑64/+90) | mtr ← / ← deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,299,240 | 0 | A | C | 99.2% | 930.0 / ‑4.1 | 232 | intergenic (‑64/+90) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base C (110/120); total (111/121) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 232 total aligned reads displayed.
CCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCG > CP009273/3299100‑3299384 | ccAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTAc > 1:782979/1‑148 (MQ=255) aataatGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACaa > 2:1979591/1‑148 (MQ=255) aataatGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGGTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTGGTTATGCATTG‑CACTGTACCAGTACCCGAGTCCaa > 2:2160254/1‑148 (MQ=255) ataatGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACaaa < 1:3466769/148‑1 (MQ=255) ataatGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACaaa < 1:2565860/148‑1 (MQ=255) ataatGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACaaa < 1:250676/148‑1 (MQ=255) ataatGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACaaa < 1:2180335/148‑1 (MQ=255) taatGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACaaaa < 1:620572/148‑1 (MQ=255) taatGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACACGAGTACaaaa > 2:2718928/1‑148 (MQ=255) aatGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAg < 1:879739/148‑1 (MQ=255) atGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGa < 1:988106/148‑1 (MQ=255) tGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGAc < 2:3405630/148‑1 (MQ=255) tGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGAc < 2:3217798/148‑1 (MQ=255) tGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGAc < 2:3036038/148‑1 (MQ=255) cgATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGaaaaaaa < 1:1032659/148‑1 (MQ=255) cgATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGaaaaaaa < 1:2099366/148‑1 (MQ=255) gATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAg > 2:49581/1‑148 (MQ=255) aTAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGc > 1:3740913/1‑148 (MQ=255) tAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGcc > 1:2015342/1‑148 (MQ=255) tAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGcc < 1:3357905/148‑1 (MQ=255) tAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGAATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGcc > 1:1940211/1‑148 (MQ=255) aTCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGcccc > 1:3181797/1‑148 (MQ=255) aaccacGCCGCCAAGCTGCGACGGTGAGGTTTGGGTGGTTGTTAGTGTTGCCATGTGGGTTTCTCTCCATTTAAAAATTGTGCGAATGCGTTGTTTTGCATTG‑CACTGTACCAGTACCCGATTACAAATGACACAAAAAAAGCCCCGa < 2:737297/147‑1 (MQ=255) accacGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGAt > 1:2919342/1‑148 (MQ=255) cacGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATgg > 1:2258805/1‑148 (MQ=255) cacGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTAAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATgg > 2:2642255/1‑148 (MQ=255) caagccgccAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATgg > 2:1206682/4‑148 (MQ=255) acGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGt > 1:241318/1‑148 (MQ=255) acGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGt < 2:3630667/148‑1 (MQ=255) cgccACGCAGCGAGGGTGACGTTTGGGTGGTGGTTTGTGTTGCCTTGAGGGCTTCTCTCCAGTTAAAAATAGTGCGACTGCTTTGTTATGCATTC‑CACTGTACCAGTACCCGAGTACAAAAGACATAAAAAAAGCCCCGATGGTaaaa < 1:1166021/148‑1 (MQ=255) cgcaatgcagcGAGGGTGAGGTTTGGGTGGTGTTTAGTGTTGCCTTGTGGGCTTCTCTCCAGTGAAAAATAGTGCGAGTGCTTTTTTATGCATTG‑CACTTTACCAGTACCCGATTAAAAAAGACACAAAAAAAGCCCCGATGGTaaaa < 1:3641834/142‑1 (MQ=255) ccacccagcGACGGTGCCGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGGGCGCCTGCGTTGTTATGCATTG‑CACTGTACCAGTCCCCGAGTACAAAAGACACAAAAAAAGCCCCGATGGTAAAAAt < 2:1638565/143‑1 (MQ=255) ccAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAAt < 2:208384/148‑1 (MQ=255) agcagcGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCgg < 2:895693/148‑1 (MQ=255) gcagcGACGTTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTACTCTCCATTGAAAAATAGTGCGACTGCGTTTTTTTGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACTGAAAAAAAGCCCCGATGGTAAAAATCggg < 2:3575248/148‑1 (MQ=255) gcagcGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCggg > 2:2714173/1‑148 (MQ=255) gcagcGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCggg > 2:876067/1‑148 (MQ=255) gcagcGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCggg > 1:219788/1‑148 (MQ=255) cagcGAGGGTGAGGTTGGGGTGGTGTTTTGTGTTGCCATGCGGGCTTCTCTCCAGTTAAAATTTGTGCGAGTGGGTTTTTATGCTTGG‑CACTGTACACGTCCCCGAGAACAAAAGCCACAAAAAAAGCCCCGATGGTAAAAATCgggg < 1:3267073/148‑1 (MQ=255) cGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATATTGCTACAGCGTTGTTATTCATTG‑CACTGTACAAGTACCAGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATAGGGGCTg > 1:1850855/1‑148 (MQ=255) aCGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGta > 2:2662422/1‑148 (MQ=255) tGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGtatata > 2:2004440/1‑148 (MQ=255) ggtggtggtTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACACAAGACAGAAAAAAAGCCCCGATGGTAAAACTCGGGGCTGTATATATTATTTTAc > 2:3525745/1‑148 (MQ=255) tggtgttTAGTGTTGCCATGATGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAg < 2:2060400/148‑1 (MQ=255) ggtggtTTGTGTTGCCATGAGGGCTTCTCACCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGa < 1:2861975/148‑1 (MQ=255) ggtggtTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGa < 2:602418/148‑1 (MQ=255) gttgtTTGTGTGGCCATGAGGGCTTATCTCCAGTGAAAAATTGTGCGACTGTGTTTTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGAt < 1:2334957/145‑1 (MQ=255) ggtTAGTGTTGCCATGAGGGCTTCTCTCCATTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATtg < 2:1099245/148‑1 (MQ=255) tttgtgtTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCTTTTTTATGCTTTG‑CAGTGTACCAGTACCCGATTAAAAAAGACACAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATtgtg < 1:1979591/145‑1 (MQ=255) ttAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATtgtg > 1:1489387/1‑148 (MQ=255) gttgtgtTGCGTTGCGGGGTTCTCTCGAGTTAAAAATTGTGCGATTGGGTTGTTTTGCATTG‑CACTGTACCAGTCCCCGCGTCAAAAAGAACCAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATtgtg < 1:2160254/145‑1 (MQ=255) tAGTGTTGCCTTGCGGGCTTCTCTCCATTTAAAAATTGTGCGACTGCGTTGTTATGAATGG‑AAGTGTACCAGTACCCGATAACAAAACACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTgtgt < 1:2660313/148‑1 (MQ=255) aGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGtt < 2:3351079/148‑1 (MQ=255) gtgtTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTTTTATGCATTG‑CACTGTACCAGTACCCGAGTAAAAAAGACATAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTc < 1:304300/148‑1 (MQ=255) gtgtTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTc > 2:1774651/1‑148 (MQ=255) gtTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGc < 1:1554176/148‑1 (MQ=255) gtTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGc < 2:3714633/148‑1 (MQ=255) gtTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGc < 2:3714680/148‑1 (MQ=255) tGCCTTGAGGGTTTCTCTCCTTTTAAAAATTGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCATTACCCTAGTACAAAACACACAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTg < 1:440782/148‑1 (MQ=255) cATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTc < 2:1483566/148‑1 (MQ=255) cATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTc > 1:3412251/1‑148 (MQ=255) tGAGGGCTTCTCCCCAGTTAAAAATAGTGCGAC‑GGGTTTTTTAGGATTGCCACTTTACCCGTCCCCGAGAACAACACACACAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAg < 1:1682835/148‑1 (MQ=255) gggCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCga > 2:1250504/1‑148 (MQ=255) cTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCgatga > 1:2457720/1‑148 (MQ=255) cTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCgatga < 2:3749522/148‑1 (MQ=255) ttCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCgatgat < 2:1801053/148‑1 (MQ=255) tctctcCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGAtt > 1:537375/1‑148 (MQ=255) tctctcCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGAtt > 1:100390/1‑148 (MQ=255) ctctcCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACACAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTa < 1:526876/148‑1 (MQ=255) ctctcCAGTGAAAAATAGTGCGACGGCGTTTTTATGCTTTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTa < 1:1393438/148‑1 (MQ=255) ctcCAGTTAAAAATAGTGCGACTGCGTTGTTATGCATGG‑CACTGTACCAGTACCCGATAAAAAAAGACACAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACg < 1:1435935/148‑1 (MQ=255) cAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCac < 2:1361311/148‑2 (MQ=255) tGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATcac > 2:3250489/1‑148 (MQ=255) gAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATcacc > 2:3480088/1‑148 (MQ=255) aTAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGa > 1:56649/1‑148 (MQ=255) aTAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGa > 1:1223316/1‑148 (MQ=255) tAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGaa > 2:1744051/1‑148 (MQ=255) tAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGaa < 2:1611268/148‑1 (MQ=255) tGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacg > 1:2639635/1‑148 (MQ=255) tGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacg < 1:2718928/148‑1 (MQ=255) gCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacga > 1:662821/1‑148 (MQ=255) aCTGCTTTTTTATGCATTG‑CACTGTACCAGTACCCTAGTAAAAAATACATAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacgacga < 2:2569931/148‑1 (MQ=255) aCTGCTTTGTTATGAATGG‑CATTGTACCAGTACCCGATTACAAAATACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTTTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGTTGATTACGCATCACCACCGAAacgacga < 2:653131/148‑1 (MQ=255) aCTGCGTTGTTATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacgacga < 2:3181797/148‑1 (MQ=255) ttgttATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCg > 1:3060639/1‑148 (MQ=255) ttttATGCATTG‑CACTTTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCgg < 2:1938834/146‑1 (MQ=255) tgttATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCgg > 2:1574962/1‑148 (MQ=255) ttATGCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTa > 1:165616/1‑148 (MQ=255) gCATTG‑CACTGTACCCGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAat < 2:2423183/148‑1 (MQ=255) gCATTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAat > 2:2184519/1‑148 (MQ=255) gCATTG‑CACTATACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAat > 2:3779548/1‑148 (MQ=255) gCATTG‑CACTATACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGAGTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAat > 2:662803/1‑148 (MQ=255) aTTG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAatca < 2:2510294/148‑1 (MQ=255) tG‑CACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAatcatc > 1:3131547/1‑148 (MQ=255) tgaaCTGTACCAGAACCCGTGTAAAAACGACACAAAAAATGCCCAGATGGTAAAACTCGGGGATTTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCTTAACCACCGAAACGACGACGACCGGTAGAatcatc < 1:2224929/145‑1 (MQ=255) cACTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCac > 2:2881044/1‑148 (MQ=255) aCTGTACCCGCCCCCGAGAACAAAACACACAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCacg < 1:2714173/148‑1 (MQ=255) cTGTACCAGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCacga > 1:3645521/1‑148 (MQ=255) aGTACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAg > 1:2018522/1‑148 (MQ=255) tACCCGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAgcg > 2:2208655/1‑148 (MQ=255) | CCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTG‑CACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCG > CP009273/3299100‑3299384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |