| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,338,710 | G→T | 5.4% | W212L (TGG→TTG) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,338,710 | 0 | G | T | 5.4% | 848.9 / 14.0 | 219 | W212L (TGG→TTG) | rpoN | RNA polymerase, sigma 54 (sigma N) factor |
| Reads supporting (aligned to +/- strand): ref base G (112/95); new base T (8/4); total (120/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 219 total aligned reads displayed.
AGTATAGGCGATGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATCCGCGCCCC > CP009273/3338565‑3338855 | aGTATAGGCGATGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGc > 2:1053617/1‑148 (MQ=255)aGTATAGGCGATGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGc > 1:1449276/1‑148 (MQ=255) gTATAGGCGATGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCt > 1:2403707/1‑148 (MQ=255) tataGGCGATGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTg > 1:2213775/1‑148 (MQ=255) taGGCGATGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGa < 2:2989673/148‑1 (MQ=255) ggCGATGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAag < 1:2505034/148‑1 (MQ=255) ggCGATGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAag > 2:1440116/1‑148 (MQ=255) aTGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACTGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCAGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGc > 2:2231496/1‑148 (MQ=255) aTGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGc < 1:1102569/148‑1 (MQ=255) gagaTCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGAc > 2:640317/1‑148 (MQ=255) agaTCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACt > 2:3093743/1‑148 (MQ=255) gaTCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTg < 1:217929/148‑1 (MQ=255) atcgacatcgacGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGa < 1:1112799/148‑1 (MQ=255) tcgacatcgacGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGAt > 2:407238/1‑148 (MQ=255) cgacatcgacGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATc > 1:849734/1‑148 (MQ=255) atcgacGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTa < 1:2867770/148‑1 (MQ=255) atcgacGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTa < 1:954926/148‑1 (MQ=255) gacgaAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCg < 2:3199517/148‑1 (MQ=255) acgaAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGa > 2:3009543/1‑148 (MQ=255) acgaAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGa < 2:264191/148‑1 (MQ=255) cgaAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGat < 1:2530296/148‑1 (MQ=255) gaAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCGGGAAGAGGCCAGACTGATCATTAGCGatc < 2:1810631/148‑1 (MQ=255) tGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCAtctc > 2:3792767/1‑148 (MQ=255) aaGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGa > 1:1861607/1‑148 (MQ=255) aaGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGa > 1:2370523/1‑148 (MQ=255) aaGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGa > 1:1687665/1‑148 (MQ=255) aGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGAt < 1:1770130/148‑1 (MQ=255) aGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGAt > 1:3129994/1‑148 (MQ=255) ccGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCt > 1:3551019/1‑148 (MQ=255) tCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGtt > 1:3541030/1‑148 (MQ=255) ccTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTa < 2:838049/148‑1 (MQ=255) ccTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTa > 1:2566865/1‑148 (MQ=255) ccTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTa > 1:2006404/1‑148 (MQ=255) ttAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGc > 1:1261786/1‑148 (MQ=255) ttAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGc > 1:727020/1‑148 (MQ=255) aGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTTGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCaa > 1:117306/1‑148 (MQ=255) cGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTTGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATc > 1:1903104/1‑148 (MQ=255) tCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGa > 2:1874049/1‑148 (MQ=255) tCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGa > 1:3659873/1‑148 (MQ=255) tttGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCa < 1:1612502/148‑1 (MQ=255) tttGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCa < 1:3809931/148‑1 (MQ=255) ttGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCAc > 2:1093221/1‑148 (MQ=255) ttGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCAc > 2:10745/1‑148 (MQ=255) ttGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCAc < 2:1129979/148‑1 (MQ=255) tGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACt < 1:1352635/148‑1 (MQ=255) gATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACtt < 1:1837182/148‑1 (MQ=255) tCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTa < 1:2972112/148‑1 (MQ=255) ccGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTaa < 2:1424361/148‑1 (MQ=255) ccGGTCGGTGTGGCGGAAAATGATCTGCGTGACTGTCTTCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTaa < 2:3782092/148‑1 (MQ=255) tcggtGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATgcg < 1:74609/148‑1 (MQ=255) tgtgGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTc > 2:1553684/1‑148 (MQ=255) tgtgGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTc > 2:2463805/1‑148 (MQ=255) gcggcAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCAcgc > 2:2351651/1‑148 (MQ=255) cggcAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCTCACTTTAATGCGCGTCAcgcg > 2:2152067/1‑148 (MQ=255) cggcAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCAcgcg < 2:1289981/148‑1 (MQ=255) cggcAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCAcgcg < 2:1113981/148‑1 (MQ=255) cAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCt > 1:3129317/1‑148 (MQ=255) cAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCt > 1:2877727/1‑148 (MQ=255) aaaGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGa > 1:3241685/1‑148 (MQ=255) aaGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGGCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGaa > 1:2782651/1‑148 (MQ=255) aaGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGaa > 2:1304454/1‑148 (MQ=255) gATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAaag > 1:2964872/1‑148 (MQ=255) aTCTGCGTGACTGTCTGCTGATCCACCTCTCCCAATTCGAGCAGACCCCGCCGTGGCTGGAAGAGGCCAGACTGCTCATTAGCGCTCCTCTCGATCTGTGAGCCAATCCCGACTGCCGCCCTGTAATGCGCGTCACGCGTCTGTaaga > 2:512136/1‑148 (MQ=255) tCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAaagaa > 2:3364018/1‑148 (MQ=255) cTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAaagaag < 2:3559926/148‑1 (MQ=255) cTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAaagaag < 2:3147929/148‑1 (MQ=255) cGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGAtg < 2:2376109/148‑1 (MQ=255) cGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGAtg > 1:1723730/1‑148 (MQ=255) aCTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCt > 2:2596343/1‑148 (MQ=255) aCTGTCTGCTGATCCAACTCTCCAAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTAAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCt > 1:930761/1‑148 (MQ=255) cTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTg > 2:2275717/1‑148 (MQ=255) gTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTTGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAaag < 2:1530017/135‑1 (MQ=255) gTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTTGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAaag > 1:3612967/1‑135 (MQ=255) gTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTTGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAaag < 2:3613014/135‑1 (MQ=255) ctgctgATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaag > 1:2072897/1‑148 (MQ=255) tgctgATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaaga < 2:1687665/148‑1 (MQ=255) gctgATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa > 1:3553146/1‑148 (MQ=255) cAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCa < 2:1797679/148‑1 (MQ=255) cAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCa > 1:615944/1‑148 (MQ=255) aaCTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCaa > 1:3328934/1‑148 (MQ=255) aaCTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCaa > 2:1588985/1‑148 (MQ=255) aCTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAAt > 2:1824793/1‑148 (MQ=255) aCTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAAt > 2:825707/1‑148 (MQ=255) aCTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAAt > 1:3515089/1‑148 (MQ=255) aCTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAAt > 1:1619506/1‑148 (MQ=255) ctctCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATc < 1:3267507/148‑1 (MQ=255) tctcCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTAACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCt > 2:2402205/1‑148 (MQ=255) ctcCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTg < 1:2167582/148‑1 (MQ=255) aaTTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCa > 1:178232/1‑148 (MQ=255) aTTCGATAAGACCACGCCGTTGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGTAAGAAGCCGTCAATCTGATCCAg > 1:3559597/1‑148 (MQ=255) aTAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCt > 2:149309/1‑148 (MQ=255) aTAAGACCACACCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCt > 2:1673203/1‑148 (MQ=255) gACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGAt < 2:2089997/148‑1 (MQ=255) gACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGAt > 1:410303/1‑148 (MQ=255) gACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGAt < 2:1449276/148‑1 (MQ=255) aCCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATc > 2:2432395/1‑148 (MQ=255) aCCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATc > 1:1917138/1‑148 (MQ=255) aCCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATc < 1:1109873/148‑1 (MQ=255) cACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAATCAGTCAATCTGATCCAGTCGCTCGATCcg > 1:3193290/1‑148 (MQ=255) cGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATCcgcg > 2:2267046/1‑148 (MQ=255) | AGTATAGGCGATGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCCGGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGGAAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATCCGCGCCCC > CP009273/3338565‑3338855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |