| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,498,239 | A→C | 8.1% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,498,239 | 0 | A | C | 8.1% | 321.2 / 6.5 | 146 | intergenic (+97/+55) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Reads supporting (aligned to +/- strand): ref base A (54/76); new base C (13/3); total (67/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.13e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 151 total aligned reads displayed.
TGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATTG > CP009273/3498095‑3498386 | tGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAg < 2:743725/148‑1 (MQ=255) cgcgCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAgggg < 1:3044184/148‑1 (MQ=255) gcgcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCAAACCCAC‑TCCCCCAAGGGGc > 2:3668149/1‑148 (MQ=255) cgcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCAAACCCTC‑TCCCCAAAGGGGCg > 2:604756/1‑148 (MQ=255) gcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGa < 2:1321074/148‑1 (MQ=255) ccAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCAGAACCAAAACCAC‑TACCCAAAAGGGCggt > 2:1947533/1‑146 (MQ=37) cAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAACGGGGCGA‑gg < 2:33937/148‑1 (MQ=255) aTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑gggg < 1:2191394/148‑1 (MQ=255) cGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGACTTTTACATCCCGTACGTTCCCCACACCCGAACCCGC‑TCCCCCAAGGGGCGC‑GGGGAc > 2:2187574/1‑148 (MQ=38) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTGCCCCCCCCCCAAACCCCC‑ACCCCCACGGGGGGG‑GGGGGccc > 1:567969/1‑147 (MQ=37) cACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGGGGCCCCCCCCCAACCCCCAACCCCAAACGGGCGG‑GGGGCCCggg > 1:425602/1‑146 (MQ=25) ccTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTGCCCCCACCCGAAACCAC‑TACCCCAAAGGGCGC‑GGGGGcccgtgag > 2:1780303/1‑142 (MQ=37) ccTTAACTATTGATAATAAAACACATTCACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCCTCACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAg < 2:2805433/148‑1 (MQ=255) cTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCAC‑TCCCCAAAGGGGCGC‑GGGGACCGGTCAGt > 2:2483600/1‑148 (MQ=255) cTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCCAACCCTC‑TCCCCAAAGGGGCGA‑GGGGGCCCTTCCGt > 2:2481774/1‑148 (MQ=255) tAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGGCCGCCCCCCAACCCACACCCCCCAAGGGGGGG‑GGGGGCCGtgggtac > 1:3070975/1‑142 (MQ=25) aaCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCACACCCAAAACCAC‑AACCCAAACGGGCGC‑GGGGCCCGTGCAGTaac > 2:2342328/1‑146 (MQ=37) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGaa < 1:3372655/148‑1 (MQ=255) aTTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAAt < 1:1413046/148‑1 (MQ=255) gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTa < 2:2202069/148‑1 (MQ=255) gATAAGAAACGACATTAACCGTCGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATATTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCCAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTa < 2:2201675/148‑1 (MQ=39) ataataAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCCCCCAAAACCAC‑ACCCCACAACGCCGAGGGGGACGGTTC‑CTACGGAAATTat > 2:1643031/1‑147 (MQ=25) taataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGc < 1:1822034/148‑1 (MQ=255) aataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCt < 1:237320/148‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTGCCCGCACCCGAAACCAC‑ACCCCCAAAGGGCGG‑GGGGGCCCGTCAATACGGGAATTatgtt > 1:1602890/1‑144 (MQ=21) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAAACCAC‑ACCCCAAAGGGGCCA‑GGGGCCCCGTCCGTACGGAAATTAACTTGACgg > 2:2516666/1‑148 (MQ=37) aCATTCACCGTAGGCCGGATAAGATGCGCCAGCATCGCCTCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTACCCCTC‑TCCCCAACGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTg < 2:3096024/148‑1 (MQ=255) tAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTAt < 2:1485015/148‑1 (MQ=255) tAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCAAACCCAA‑ACCCCAAACGGGCCA‑GGGGCCCCGTGAGTACGGTATTTATCGTTACGGTGCTAt > 2:2974949/1‑148 (MQ=25) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATcc < 1:2469206/148‑1 (MQ=255) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCCC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATcc < 1:2469303/148‑1 (MQ=255) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGATGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCa < 1:2131680/148‑1 (MQ=255) aGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAt < 1:2073712/148‑1 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTaa < 1:3607179/148‑1 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTaa < 2:160288/148‑1 (MQ=255) cGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTACCCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTaaa < 2:2728220/148‑1 (MQ=255) ggATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAAt < 1:564556/148‑1 (MQ=255) gATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATa < 2:1579810/148‑1 (MQ=255) gATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATa < 1:18879/148‑1 (MQ=255) gATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCACACCCAAAAACAC‑TACCCCAACGGGCGT‑GGGGACCGGTCATTAAGGTATTTATCGTGTCGGTGGTATCCAGCCATAAAAAATggg > 2:1263854/1‑147 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCCCACCCCAAAACAA‑ACCCCAAACCGGGGC‑TGGGCCCCGTCAGTAAGGAAATTATCTTGAGGGTGCTATCCACCATTAAATAAAGGCa > 2:898517/1‑148 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCACACCCAAAAACAC‑TCCCCAAAGGGGGGA‑GGGGACCCTTCATTACGGAATTTATCTTTTAGGTGCTATCCAGCATTAAATAATGGcc > 2:555313/1‑147 (MQ=255) gcatcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACtctc < 1:2824412/148‑1 (MQ=255) gcatcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACtctc < 1:3068053/148‑1 (MQ=255) gcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCACACCCGAACCCAC‑ACCCCCAAGGGGCGC‑GGGGCCCCGTCAGTACGGAATTTAGCGTGTCGGTGCGATCCAGCATTAAATAATTGCAATACACACACGCa > 2:607063/1‑148 (MQ=255) catcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCaa < 2:3541722/148‑1 (MQ=255) cGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgc < 2:425602/148‑1 (MQ=255) cGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgc < 2:3340625/148‑1 (MQ=255) gcgcGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGt < 2:2649634/148‑1 (MQ=255) ttGAATTTTACATCCCGTACGGTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCtt < 2:2855730/148‑1 (MQ=255) ttGAATTTTACATCCCGTACGGTCCCCACACCCAAACCCTC‑TACCCAAAGGGGGGG‑GGGGACCGGTGATTAAGGAATTTATCTTTAAGGTGCAAACCAGCATTAAAAAAAGGCAAAACTCTAACCCAAAATCACCCGCACCCGCTCtt > 2:613416/1‑148 (MQ=255) tGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTc < 1:1644202/148‑1 (MQ=255) tttACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGc < 2:2108238/148‑1 (MQ=255) aTCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGa < 1:604809/148‑1 (MQ=255) cGTACGTTCCCCTCACCCTAACCCTC‑GCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCGATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCg < 2:2636203/148‑1 (MQ=255) gTACGTTCCCCTCACCCTAACCCTC‑TCCCCAACGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCCCGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCgg < 2:2538701/148‑1 (MQ=255) tACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCggg < 2:1045925/148‑1 (MQ=255) aCGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCgggg > 2:2013512/1‑147 (MQ=255) aCGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGt > 2:2301221/1‑148 (MQ=255) aCGTTCCCCTCACACTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGt < 1:267794/148‑1 (MQ=255) ttCCCCTCACCCTAACCCTC‑TCCCCCAAGGGGCGA‑GGGGACCGTTCAGTACGTAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTaa < 1:3366856/148‑1 (MQ=255) ttCCCCTCACCCTAACCCTC‑TCCCCAACGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTaa < 1:1464546/148‑1 (MQ=255) ttCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTaa > 1:3504790/1‑148 (MQ=255) gtCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTaa < 2:1955956/147‑1 (MQ=255) tacccTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTCTCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGGTAAt > 2:423716/3‑148 (MQ=255) tCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt > 2:200267/1‑148 (MQ=255) tCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt > 2:453689/1‑148 (MQ=255) tCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt > 1:2413991/1‑148 (MQ=255) ccccTCCCCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATg < 2:1130445/148‑1 (MQ=255) ccccTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATg < 2:2739947/148‑1 (MQ=255) ccccTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATg < 2:1130461/148‑1 (MQ=255) cccTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCg > 2:247781/1‑148 (MQ=255) cccTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCg > 2:247073/1‑148 (MQ=255) ccTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAGTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGc > 2:619098/1‑148 (MQ=255) cTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGca > 1:2622134/1‑148 (MQ=255) aCCCTC‑TCCCCACAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACaa < 1:1329440/148‑1 (MQ=255) cccTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAAt > 2:1263229/1‑148 (MQ=255) ccTC‑TCCCCACCGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATg < 2:1844104/148‑1 (MQ=255) ctc‑tCCCCAACGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGt < 2:3070975/148‑1 (MQ=255) ctc‑tCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGt > 1:109554/1‑148 (MQ=255) ctc‑tCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGt > 2:3377181/1‑148 (MQ=255) tc‑tcCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGtt > 1:2631442/1‑148 (MQ=255) tc‑tcCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGtt > 2:3569863/1‑148 (MQ=255) tc‑tcCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGtt > 1:899559/1‑148 (MQ=255) tc‑tcCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGtt > 1:899615/1‑148 (MQ=255) tc‑tcCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGtt < 2:1031233/148‑1 (MQ=255) c‑tcCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTc > 2:807721/1‑148 (MQ=255) c‑tcCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTc < 1:780746/148‑1 (MQ=255) c‑tcCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTc > 2:807642/1‑148 (MQ=255) ccccAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTg > 2:3448829/1‑148 (MQ=255) cccAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGa > 2:3528539/1‑148 (MQ=255) cccAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGa < 1:137609/148‑1 (MQ=255) cccAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGa > 1:2048173/1‑148 (MQ=255) cccAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGa < 1:1244429/148‑1 (MQ=255) cccAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGa > 1:2382765/1‑148 (MQ=255) cccAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACAGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGa < 2:477628/148‑1 (MQ=255) ccAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAt < 1:529242/148‑1 (MQ=255) cAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAtt > 2:2972565/1‑148 (MQ=255) aaaGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATtg < 1:2342328/148‑1 (MQ=255) aaaGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATtg < 1:2483600/148‑1 (MQ=255) | TGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGA‑GGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATTG > CP009273/3498095‑3498386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |