| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,545,077 | C→A | 20.4% | L252L (CTG→CTT) | malP ← | maltodextrin phosphorylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,545,077 | 0 | C | A | 20.4% | 534.1 / 88.5 | 200 | L252L (CTG→CTT) | malP | maltodextrin phosphorylase |
| Reads supporting (aligned to +/- strand): ref base C (88/71); new base A (20/21); total (108/92) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01 | |||||||||||
Only 100 of 202 total aligned reads displayed.
GTAATCCGCCAGTTCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAGATCC > CP009273/3544930‑3545224 | gTAATCCGCCAGTTCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTc < 1:2052438/148‑1 (MQ=255) tCCGCCAGTTCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGtt > 1:2272996/1‑148 (MQ=255) tCCGCCAGTTCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGtt > 1:931404/1‑148 (MQ=255) tCCGCCAGTTCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGtt > 2:1869585/1‑148 (MQ=255) tCCGCCAGTTCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGtt > 1:2091520/1‑148 (MQ=255) gCCAGTTCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGttttt < 1:2440169/148‑1 (MQ=255) ccAGTTCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTc < 2:3638901/148‑1 (MQ=255) ttCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCa > 1:202609/1‑148 (MQ=255) tCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCAt < 1:2275790/148‑1 (MQ=255) tCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCAt > 2:628098/1‑148 (MQ=255) gTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCATTg < 1:1864469/148‑1 (MQ=255) gTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCATTg < 1:323545/148‑1 (MQ=255) tGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGa < 1:2544952/148‑1 (MQ=255) gaaGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATGAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGag < 2:2205491/146‑2 (MQ=255) gCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGAt < 2:2204801/148‑1 (MQ=255) gCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGAt > 2:294416/1‑148 (MQ=255) aGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGc < 1:3575083/148‑1 (MQ=255) tttACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGccc > 2:826357/1‑148 (MQ=255) tttACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGccc > 1:1452367/1‑148 (MQ=255) tttACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCATTGATGccc > 1:736610/1‑148 (MQ=255) ttACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCct > 1:655921/1‑148 (MQ=255) aCGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCctgc < 2:3163634/148‑1 (MQ=255) gCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCctgctg < 2:1024458/148‑1 (MQ=255) cGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCg > 1:971051/1‑148 (MQ=255) ccAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGc > 2:2115401/1‑148 (MQ=255) atgatgGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGc > 1:3656754/1‑148 (MQ=255) tgatgGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCa < 2:1784761/148‑1 (MQ=255) atgGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAg > 2:644628/1‑148 (MQ=255) atgGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAg > 2:2565332/1‑148 (MQ=255) tgGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGa > 1:2168311/1‑148 (MQ=255) ggCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGag > 1:3771669/1‑147 (MQ=255) cGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAAt > 2:413350/1‑148 (MQ=255) aCGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCa < 2:1167313/148‑1 (MQ=255) aCGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCa < 2:1166510/148‑1 (MQ=255) aaTATCCGCTACCGAACAGGCACACTTGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACcgtcg > 1:1385545/1‑148 (MQ=255) aaTATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACcgtcg < 1:3271372/148‑1 (MQ=255) aaTATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACcgtcg < 2:1790135/148‑1 (MQ=255) atCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTa > 1:3772538/1‑148 (MQ=255) tCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTaa < 1:1804018/148‑1 (MQ=255) ccGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTaaa < 2:3541569/148‑1 (MQ=255) gCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAAtt > 2:2510617/1‑148 (MQ=255) cTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAAttt < 2:1103916/148‑1 (MQ=255) aCCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAg < 1:1279734/148‑1 (MQ=255) cGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTc > 2:1238278/1‑148 (MQ=255) cGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTGAAATTTATTc > 2:2128507/1‑148 (MQ=255) aCAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGa < 2:3665241/148‑1 (MQ=255) aCAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTACGCATTGATGCCCAGCTGTTCGGCACGCAACAAATCACCGTCGGTTAATATAGACAGa > 1:149372/1‑148 (MQ=255) cAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGAt > 2:3371216/1‑148 (MQ=255) cacaCTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCaaa < 1:451532/148‑1 (MQ=255) cacTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTATTCAGATAAAAcc > 1:865342/1‑147 (MQ=255) cacTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTGAAATTTAGTCAGATCAAACg > 1:3725869/1‑148 (MQ=255) acTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACgg < 1:3348189/148‑1 (MQ=255) cTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGa < 1:2869565/148‑1 (MQ=255) cTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGa < 1:2883481/148‑1 (MQ=255) cTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGa < 1:3663782/148‑1 (MQ=255) cTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGGTCGGCACGCAAGAAATCACCGGCGGTTCATGTGGTCAGATCCCACggg > 1:3424997/1‑147 (MQ=255) cTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGa < 2:588151/148‑1 (MQ=255) ggAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTATTCAGATAAAAAGGATg > 1:1854426/1‑148 (MQ=255) ttGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCgcgtgc > 2:1443959/1‑148 (MQ=255) ctgcATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTc > 2:3292749/1‑148 (MQ=255) cATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGcc < 1:1860498/148‑1 (MQ=255) tCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCCGATCAAAAGGATGCGCGTGCGGCGccgg > 1:1862812/1‑146 (MQ=255) gcgcAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCcac < 2:1497689/148‑1 (MQ=255) gcgcAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCcac < 2:2800367/148‑1 (MQ=255) cAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTATTCAGATAAAAAGGATGCGCGTGCGTCGCCAGCcacaca > 1:1556167/1‑146 (MQ=255) cAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGa < 1:754824/148‑1 (MQ=255) gCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCCCAGACg > 2:3746088/1‑148 (MQ=255) cTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTGTATTTTTTGAGATCAAAACGATTGCCGTGCGTCGCCTGCCACAGACGc > 1:762376/1‑148 (MQ=255) aCCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGc < 1:596995/148‑1 (MQ=255) ccGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCAAAGACGCAGCGGCt > 2:3436964/1‑148 (MQ=255) ccGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATAAAAAGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCt > 2:465221/1‑148 (MQ=255) gTATGGTTGTCGTTTGGATAGAGAACTTTGGTAAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTGAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGcgcca > 2:555925/1‑148 (MQ=255) aTGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTTAAATTATTCAGATAAAAAGGATTCGCGTGCGTAGCCAGCCACACACGCCACGGCGGcgccccc > 1:1754582/1‑145 (MQ=255) aTGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAAAGGATGCGCGTGCGTCGCCAGCCACAGACGCAGCCGCAGcgccacc > 2:1768118/1‑147 (MQ=255) gTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGcgccacgcca < 1:2978924/148‑1 (MQ=255) gTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGcgccacgcca < 1:2978732/148‑1 (MQ=255) gTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTa < 1:3469773/148‑1 (MQ=255) cGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACg < 2:3090672/148‑1 (MQ=255) ttGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACCCACCCAGCGGCTGCGCCCCGCCATTACGATa > 1:2163385/1‑148 (MQ=255) ttGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATa > 2:3779539/1‑148 (MQ=255) ggATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGc < 1:913807/148‑1 (MQ=255) ggATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGc < 1:292925/148‑1 (MQ=255) gATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTGAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCAGCCACAGACCCAGCGGCTGCGCCACCCCATTACGATAGcc > 1:2109268/1‑148 (MQ=255) gATAGAGAACTTTGGTAAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAAAGGATGCGCGTGCGTCGCCAGCCACACACGCAGCCGCTGCGCCACGCCAATACCATAGcc > 1:1176644/1‑148 (MQ=255) tAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGa > 2:1964188/1‑148 (MQ=255) agagAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTGAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCCCGCCATTACGATAGCCGAc > 2:3804306/1‑148 (MQ=255) agagAACTTTGGTAAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTATTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCCTTACGATATCCGAc > 2:1697685/1‑148 (MQ=255) agaACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACaa < 2:2899550/148‑1 (MQ=255) agaACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACaa < 1:644628/148‑1 (MQ=255) agaACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACaa < 2:1484218/148‑1 (MQ=255) agaACTTTGGTAAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACaa > 2:953232/1‑148 (MQ=255) cTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGAAAAAAAGGCTGCGCGTGCGTCGCCTGCCCCAGAAGCAGCGGCGGCGCCCCCCCATTAAGATAGACGACAACggg > 1:498051/1‑148 (MQ=255) cTTTCGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTAAGAACAAAAGTATGAGCGAGAGTCCGCAGCCACAAACCCACCCGCATACCCCCGCCAATACCAGAGCCGCCAAcctg > 1:397523/1‑145 (MQ=255) tttGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATACGACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACgggg > 2:895313/1‑148 (MQ=255) ttGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTGAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATATCCGACAACCGGga > 1:305206/1‑148 (MQ=255) ttGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGga < 2:1385545/148‑1 (MQ=255) ggTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGgaga < 1:2366912/148‑1 (MQ=255) gTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAGAt < 2:1489010/148‑1 (MQ=255) tCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAGATc < 1:2678842/148‑1 (MQ=255) cAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCCCAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAGATcc > 1:270464/1‑148 (MQ=255) | GTAATCCGCCAGTTCGTGCAGTTTACGCCCCGCCAGATGATGGCGACGCAAAATATCCGCTACCGAACAGGCACACTGGAAGTATTGCTGCATCAGGCGCAGCTTTTTACCGGCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAGATCC > CP009273/3544930‑3545224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |