| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,567,059 | C→A | 100% | intergenic (‑197/+76) | glgB ← / ← asd | 1,4‑alpha‑glucan branching enzyme/aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,567,059 | 0 | C | A | 99.2% | 838.4 / ‑2.0 | 259 | intergenic (‑197/+76) | glgB/asd | 1,4‑alpha‑glucan branching enzyme/aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base A (127/130); total (128/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 267 total aligned reads displayed.
TCTGGTTGTGACATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATCATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTCGCCCACGGTA > CP009273/3566913‑3567204 | tCTGGTTGTGACATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAaataat < 2:136933/149‑1 (MQ=255)tCTGGTTGTGACATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATCAt > 1:2941678/1‑149 (MQ=255) ttGTGACATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAAc > 1:3080117/1‑149 (MQ=255) ttGTGACATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAAc < 1:3490281/149‑1 (MQ=255) tgACATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATc < 1:1795293/149‑1 (MQ=255) gACATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCt > 1:3775206/1‑149 (MQ=255) aCATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTg > 1:2717106/1‑149 (MQ=255) aCATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTg > 2:814163/1‑149 (MQ=255) cATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTgc > 2:2251800/1‑149 (MQ=255) cATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTgc > 1:3548371/1‑149 (MQ=255) tttttGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCtt > 1:930627/1‑149 (MQ=255) tttGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTAc < 1:3000654/149‑1 (MQ=255) tGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTc > 1:2828942/1‑149 (MQ=255) gACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTcc < 2:2205024/149‑1 (MQ=255) gACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTcc < 1:1025507/149‑1 (MQ=255) gACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTcc < 1:3577859/149‑1 (MQ=255) aCCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCt > 2:3657240/1‑149 (MQ=255) tGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTa > 1:4014228/1‑149 (MQ=255) aCGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTa > 1:4075303/1‑149 (MQ=255) ggCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACg > 1:65908/1‑149 (MQ=255) gcagcaCTCTGTGCATCCTCTCAGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCAc < 2:1104656/149‑1 (MQ=255) aCTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACa < 2:3778745/149‑1 (MQ=255) aCTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACa < 1:2709572/149‑1 (MQ=255) aCTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACa < 2:4021254/149‑1 (MQ=255) ctctGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAg < 2:1845926/149‑1 (MQ=255) tctGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAgg < 1:2399772/149‑1 (MQ=255) tgtgCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAgggg < 1:252213/149‑1 (MQ=255) tgtgCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAgggg < 1:769807/149‑1 (MQ=255) tgCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGTAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGggcg < 2:1938275/149‑1 (MQ=255) tgCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGggcg > 2:1332350/1‑149 (MQ=255) aTCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCa > 2:4079439/1‑149 (MQ=255) ctctctGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATcg > 2:392759/1‑149 (MQ=255) tctctGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATcgc < 2:2452945/149‑1 (MQ=255) tctctGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATcgc < 2:226605/149‑1 (MQ=255) gtcgtcCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAg < 2:3507614/149‑1 (MQ=255) cgtcCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGAt < 2:473329/149‑1 (MQ=255) cgtcCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGAt < 2:3525194/149‑1 (MQ=255) gtcCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGAtt < 2:2158864/149‑1 (MQ=255) ccTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCAGCGCGCCCCAGATTTa > 2:3891264/1‑149 (MQ=255) cTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGaa > 2:87697/1‑149 (MQ=255) ttCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAAt > 1:2847619/1‑149 (MQ=255) ggTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAg > 1:1405638/1‑149 (MQ=255) gTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGTATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTGAATGAATAAAGa > 1:1873360/1‑149 (MQ=255) gTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGa < 2:2623170/149‑1 (MQ=255) aaGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGAtt > 1:142394/1‑149 (MQ=255) aaGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGAtt < 1:1262812/149‑1 (MQ=255) aaGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGAtt < 1:2994054/149‑1 (MQ=255) gAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGt > 2:2060496/1‑149 (MQ=255) gAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGt > 2:3277512/1‑149 (MQ=255) tACTCATGTATTCAGCCACCCTTAAAGAATAGCCACTGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGa < 2:3005590/149‑1 (MQ=255) tACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGa > 2:927016/1‑149 (MQ=255) cTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACg < 2:3744006/149‑1 (MQ=255) aTGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTCAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTCACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAg > 2:3749205/1‑149 (MQ=255) tGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGc < 2:1475952/149‑1 (MQ=255) gTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCa > 2:3769047/1‑149 (MQ=255) gTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCa < 2:2771120/149‑1 (MQ=255) tATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCAt > 1:1109915/1‑149 (MQ=255) tATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCAt < 2:2984235/149‑1 (MQ=255) aTTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATc > 1:1023584/1‑149 (MQ=255) ttCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATcc < 2:1587917/149‑1 (MQ=255) tCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCg < 2:2670280/149‑1 (MQ=255) cAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGa < 2:91781/149‑1 (MQ=255) cccTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGc < 1:2263903/149‑1 (MQ=255) cccTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGc < 2:65908/149‑1 (MQ=255) cccTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGc > 2:2439382/1‑149 (MQ=255) ttAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGc < 1:1252494/149‑1 (MQ=255) aaaGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTc > 2:3439953/1‑149 (MQ=255) aaaGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTc < 2:631901/149‑1 (MQ=255) aaaGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTc > 2:3439543/1‑149 (MQ=255) aaaGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTc < 1:3732490/149‑1 (MQ=255) aaaGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTc < 1:3610164/149‑1 (MQ=255) aaGAATAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTcc < 2:253097/149‑1 (MQ=255) aaTAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCcgcg > 1:1498029/1‑149 (MQ=255) aaTAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCcgcg > 1:2182036/1‑149 (MQ=255) aaTAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCcgcg > 1:3832822/1‑149 (MQ=255) aaTAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAAGGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCcgcg > 1:2089678/1‑149 (MQ=255) aTAGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCgg > 1:1249681/1‑149 (MQ=255) aGCCAATGCTCTATTTAACTCCCGGTAAATAATTAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGAGCCCCAGATTTAATGAATAAAGATTACGCAAGTTGACGAAGAATGCGACGCAGAGCCTACGCGGcc > 2:3693059/1‑149 (MQ=255) aGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGcc > 2:1647228/1‑149 (MQ=255) aGCCAATGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGcc > 1:1463147/1‑149 (MQ=255) aaTGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGcccccc > 1:2007808/1‑149 (MQ=255) tGCTCTATTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCcac > 1:817345/1‑149 (MQ=255) aTTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACagcagc < 2:3245501/149‑1 (MQ=255) aTTTAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACagcagc < 2:1192216/149‑1 (MQ=255) tttAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGGGGCATCGCGCCCCTGATTTAATTAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCt < 1:2874403/149‑1 (MQ=255) tttAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCt > 2:1852279/1‑149 (MQ=255) tttAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCt < 1:814163/149‑1 (MQ=255) tttAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCt > 2:1801861/1‑149 (MQ=255) tttAACTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCt > 2:3097464/1‑149 (MQ=255) aCTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTc > 2:3396127/1‑149 (MQ=255) aCTCCCGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTc > 2:2872479/1‑149 (MQ=255) cccGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTCGcc < 1:3494724/149‑1 (MQ=255) ccGGTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTCGccc < 2:1068323/149‑1 (MQ=255) ggTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTCGCCCAc > 2:3172841/1‑149 (MQ=255) gTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTCGCCCACg > 1:1375837/1‑149 (MQ=255) gTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTCGCCCACg > 1:1375907/1‑149 (MQ=255) gTAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTCGCCCACg < 1:2204791/149‑1 (MQ=255) tAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTCGCCCACgg > 2:513947/1‑149 (MQ=255) tAAATAATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTCGCCCACgg > 2:2961188/1‑149 (MQ=255) aataatGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGACATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTCGCCCACGGTa > 2:3661368/1‑149 (MQ=255) | TCTGGTTGTGACATTTTTTTGACCTGAACGGCGCAGCACTCTGTGCATCCTCTCTGCGTCGTCCTCACTTCAGGTAAGGCTGTGAATACTCATGTATTCAGCCACCCTTAAAGAATAGCCAATGCTCTATTTAACTCCCGGTAAATCATGAAACATCTGCGCTTACTCCTGTATTACGCACTAACAGGGGCGGCATCGCGCCCCAGATTTAATGAATAAAGATTACGCCAGTTGACGAAGCATCCGACGCAGCGGCTCCGCGGCCCCCCACAGCAGCTGGTCGCCCACGGTA > CP009273/3566913‑3567204 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |