| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,602,069 | A→C | 11.7% | intergenic (+60/+42) | zntA → / ← tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,602,069 | 0 | A | C | 11.7% | 380.7 / 2.2 | 171 | intergenic (+60/+42) | zntA/tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| Reads supporting (aligned to +/- strand): ref base A (112/15); new base C (5/16); total (117/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.15e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 172 total aligned reads displayed.
TGACCGGGTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAATATCGCGG > CP009273/3601921‑3602210 | aCCGGGTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAgg < 1:1466168/149‑1 (MQ=255) aCCGGGTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAgg < 2:130281/149‑1 (MQ=255) cGGGTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGt < 1:212122/149‑1 (MQ=255) gggTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTg > 2:3555658/1‑149 (MQ=255) gTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAg < 2:2129917/149‑1 (MQ=255) gTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAg > 2:2996635/1‑149 (MQ=255) gTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAg > 2:2997084/1‑149 (MQ=255) tgtgGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAggg > 1:842262/1‑149 (MQ=255) gctggcAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGGTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGaac < 2:1364510/149‑2 (MQ=255) ggcAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAgg > 2:196637/1‑149 (MQ=255) aGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAggcgg > 1:4014610/1‑149 (MQ=255) ggCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGa > 2:1014454/1‑149 (MQ=255) ggCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGa > 1:3841592/1‑149 (MQ=255) gATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGcc > 2:1271103/1‑149 (MQ=255) gATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTGAAGATGGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGAGCGGTCCCCTCGCCCCTCTGGGGAGAGGGGTCGGGTGAGGGGAAAAGGCGGCATCGAAGcc > 2:1270502/1‑149 (MQ=39) ggcGGGGGCGCCGGTGGGGGTCCCCGCGATTGGTTTAATTTTGTGGCGCTGGATATAGGCCAAACCCCCCGCAACTGT‑GCGCGCGATGGGCCCCCCCGCCCCTGTGGGGAGTGGGTTTGGGTGCGGGGAAAAGGCGGCATCGAAGCCaa < 2:2526508/147‑1 (MQ=255) gggggCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCa > 1:3204346/1‑149 (MQ=255) ggcgcgggtggtggtGACAGCTATTGTTTTATTTTTGTTGCGCTGTATATACGCCAACCCGACCGAACCATT‑GCGCGCGCGGGGCCCCCCCCCCCCGCGGGGGTGTGGGTTTGGGGGCGGGCACAAGGCGGCATCGAAGCCAATCAGcc < 2:295318/143‑1 (MQ=255) gTGCTGGTGACAGCGAATTCGTTAAGTTTGTTTCGCAGGAGATAATGCAAACCGATCGCAACATT‑GAGCGCGATAGGTCCCATCGACACTCTGGGTATAGTGTTAGTGTGAGGGGAAAAGTCGGCATCGAAGCAAATCAGACCCTATCa > 2:2336555/1‑149 (MQ=255) tGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCaa > 1:2051548/1‑149 (MQ=255) tGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCaa > 1:3964517/1‑149 (MQ=255) tGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCaa > 1:3964515/1‑149 (MQ=255) ggTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGc > 2:2492903/1‑149 (MQ=255) ggTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGc > 2:2613173/1‑149 (MQ=255) ttGACAGCGAATGCTTTAAGATTGTGGCGCTGGATATCCCCCAACCCCACCCCAACTTT‑CCCCGCGCAGGGGCCCCTCCCCCCTCGGGGCTGAGGGTTTGGGTGTGGGCAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGcc < 2:285753/148‑1 (MQ=255) cAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTa > 1:2553538/1‑149 (MQ=255) aGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATAAGCCCCTATCAACCGCCTTTAc > 1:3608872/1‑149 (MQ=255) cGATTGCTTTAAGATTGTTGCGCAGCATATACGCAAACCCGACCGAAACATT‑GAGCGCGATCGGCCCCCCCCCCCCTCTGGGTTGTGTGTTGGGGTGTGGGTAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGa < 2:995811/149‑1 (MQ=255) gattGCGTTATGTTTGGGGCGCCGGAGATACCCAAAACCTATCGAAACTTT‑GCGCGCGAGCGGGCCCCTCCCCCCTCTGGGTATTGGTTTCGGGTGCGGGCAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGaa < 2:255517/146‑1 (MQ=255) gAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCAGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGaa > 2:3158136/1‑149 (MQ=255) gAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCAGCATCGAAGCCAATCAGCCCCTATCAACCGCCGTTACGaa > 2:3158132/1‑149 (MQ=255) aaTGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAAt > 2:3405449/1‑149 (MQ=255) aaTGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAAt > 1:966048/1‑149 (MQ=255) aTGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATc > 1:2872562/1‑149 (MQ=255) aTGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATc > 1:2872522/1‑149 (MQ=255) tGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCa > 1:1397328/1‑149 (MQ=255) tGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCa > 1:1628235/1‑149 (MQ=255) tGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCa > 1:17429/1‑149 (MQ=255) tAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATaa > 2:3145393/1‑149 (MQ=255) acgATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGGTCGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAAc > 2:2440289/3‑149 (MQ=255) aGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACg > 1:1826621/1‑149 (MQ=255) tggtggcgcTGGTGATATGGCAAACCTACCGCAACTTG‑GGGCGCGAGGGGTCCCCTCGCCCCTGGGGGTTTCGGGTTGGGGTGGGGGCACAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATa < 2:2070453/144‑1 (MQ=255) aGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTCGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTcc > 2:1977840/1‑149 (MQ=255) aGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTcc > 1:1081669/1‑149 (MQ=255) aGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTcc > 1:3138807/1‑149 (MQ=255) aGGAGAAAAGCCAAACCTCTCGC‑ACATTGGCGCGCTATCGGGCCCCCCCCCCTTGGGGGGTGTGGGTTTGGGTCTGGTGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTcc < 2:962624/149‑1 (MQ=255) gagaTAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCAt > 1:2598796/1‑149 (MQ=255) ataTAGGGCAACCGTATCGCAACTTT‑GCGGGCGAGGGGTCCCCTCGCCCGTGGGGGGTGTGGGTTTGGTTGCGGGGACAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATc < 2:3359302/147‑1 (MQ=255) aTAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCACGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCg > 2:730734/1‑149 (MQ=255) ggaaacccGATCGAAAATTT‑GCGCGCGCTCGGCCCCCGCCCCCCTCGGGGGAGTGGGTTCGGGTGTGGGCACAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGtctc < 2:1014418/143‑1 (MQ=255) ggCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGtctc > 1:3577481/1‑149 (MQ=255) ggCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGtctc > 1:1530183/1‑149 (MQ=255) aaaCCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCttt > 1:1201166/1‑149 (MQ=255) ccccGATCGCAACTTT‑GCGCCGGAGCGGCCCCCGCGCCCCGGTGGGGTGGGGGTTTGGGGGCGGGCACAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTa < 2:1757401/147‑1 (MQ=255) aaCCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTa > 1:1108638/1‑149 (MQ=255) aaCCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTa > 1:2576217/1‑149 (MQ=255) tCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGTGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAAcc < 1:1388949/149‑1 (MQ=255) cAACATT‑GAGCGCGCTCGGGCCCCTCGCCCCTCTGGGGAGTGGTTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGt < 2:2180249/149‑1 (MQ=255) aaCATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGtt > 2:1057158/1‑149 (MQ=255) aCATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTc > 2:1491795/1‑149 (MQ=255) aTT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTCGCAACCAGTTCgt > 1:2451110/1‑149 (MQ=255) aTT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCgt > 2:3409843/1‑149 (MQ=255) tt‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCgtg > 2:77725/1‑149 (MQ=255) tt‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCgtg > 2:2735858/1‑149 (MQ=255) t‑GAGCGCCTGCGGGCCCCTCGCCCCTCGGGGTTGTGTGTTTGGTTGAGGGGCCAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCgtgt < 1:4112303/149‑1 (MQ=255) tgcgcgcGATCGGCCCCCGCGCCCCGCGGGGGAGTGGGTTTGGGTGAGGGCAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCgtgt < 2:2917050/146‑1 (MQ=255) gAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGtt > 1:2093101/1‑149 (MQ=255) gAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGtt > 1:1350285/1‑149 (MQ=255) gAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGtt > 1:1350400/1‑149 (MQ=255) gAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGtt > 2:392211/1‑149 (MQ=255) gAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGtt > 1:2227226/1‑149 (MQ=255) cgctagcGGGCCCCTCCCCCCTGTGGGTAGTGGTTTTGGTTGAGGGCACAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCa < 2:1185226/143‑1 (MQ=255) cgcgAGCGGGCCCCGCCCCCCTCGGGGGAGGGGGTGCGGGTGCGGGGCCAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCa < 2:595844/149‑1 (MQ=255) gcgATGGGTCCCCTCGCCCCTGTGGGGTTTGGGTTCGGGGGAGGGCAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCAt < 2:3841592/149‑1 (MQ=255) gcgATCGGGCCCCTCGCCCCGGTGGGGAGAGGGTTTGGGTGCGGGCAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCAt < 2:3841864/149‑1 (MQ=255) cgATCGGTCCCCGCGCCCCTCTGGGGTGCGTGTTTGGGTGTGGGCACAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATa < 2:530872/149‑1 (MQ=255) gATCGGGCCCCTCGCCCCTGGGGGGTGGGGGTTCGGGGGCGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATaa < 2:1999347/149‑1 (MQ=255) tgcGGCCCCCCCGCCCCGGGGGGGTGGGGGTTCGGGGGGGCGCACAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATaaa < 1:1456880/147‑1 (MQ=255) aTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATaaa > 1:554671/1‑149 (MQ=255) aTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATaaa > 1:3768045/1‑149 (MQ=255) aTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATaaa > 1:1545174/1‑149 (MQ=255) aTCGGTCCCCTCGCCCCTCGGGGGAGCGGGTTCGGGTGCGGGGACAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATaaa < 2:3731429/149‑1 (MQ=255) gcGGTCCCCTCGCCCCTGGGGGGAGTGGGTTAGGTTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAg < 2:2300430/148‑1 (MQ=255) cGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAgg > 1:3769048/1‑149 (MQ=255) gcccccGCGCCCCTGTGGGGTGTGGGTTGGGGTGTGGGCAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTa < 2:1570964/147‑1 (MQ=255) tCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTAc > 2:2429662/1‑149 (MQ=255) tCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTGCGTGTTCCATAAAGGtcc > 2:359124/1‑147 (MQ=255) cTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACaaaa > 2:2675901/1‑149 (MQ=255) gCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAAccc > 2:652723/1‑149 (MQ=255) ccTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAgg > 2:540536/1‑149 (MQ=255) ccTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAgg > 1:324980/1‑149 (MQ=255) ggggAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAatat > 1:1805821/1‑149 (MQ=255) ggggAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAatat > 1:1805831/1‑149 (MQ=255) ggggAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAatat > 1:1806551/1‑149 (MQ=255) gggAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAATATc < 2:324980/149‑1 (MQ=255) ggAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAATATcg > 2:3694110/1‑149 (MQ=255) gagaGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAATATcgc > 2:1448307/1‑149 (MQ=255) gagaGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAATATcgc > 2:1651870/1‑149 (MQ=255) gagaGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAATATcgc > 2:1651716/1‑149 (MQ=255) tagGGTTTGGTTGTGGGGAAAATGCGGCATCGAATCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATATCGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAATATCGCgg < 2:3773691/148‑1 (MQ=255) | TGACCGGGTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGGCAAACCGATCGCAACATT‑GAGCGCGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAATATCGCGG > CP009273/3601921‑3602210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |