| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,612,284 | G→T | 100% | D113Y (GAT→TAT) | nikR → | transcriptional repressor, Ni‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,612,284 | 0 | G | T | 96.5% | 810.0 / 16.2 | 260 | D113Y (GAT→TAT) | nikR | transcriptional repressor, Ni‑binding |
| Reads supporting (aligned to +/- strand): ref base G (6/3); new base T (115/136); total (121/139) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 260 total aligned reads displayed.
AACGCGACTTAGCCAGCCGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGA > CP009273/3612138‑3612428 | aaCGCGACTTAGCCAGCCGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTAt > 2:3122471/1‑149 (MQ=255) aCGCGACTTAGCCAGCCGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATg > 2:2423561/1‑149 (MQ=255) gACTTAGCCAGCCGCATTGTCTCCACCCCGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGt < 2:1353121/149‑1 (MQ=255) gACTTAGCCAGCCGCATTGTCTCCACCCATCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGATAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGt < 2:2714787/149‑1 (MQ=255) gACTTAGCCAGCCGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGt > 2:1295505/1‑149 (MQ=255) gACTTAGCCAGCCGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGt > 2:2990144/1‑149 (MQ=255) aCTTAGCCAGCCGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGtt > 2:4097638/1‑149 (MQ=255) aCTTAGCCAGCCGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGtt < 1:2236377/149‑1 (MQ=255) cTTAGCCAGCCGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTa > 1:1369446/1‑149 (MQ=255) tAGCCAGCCGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATc < 1:192493/149‑1 (MQ=255) agccagccGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCg > 2:95330/1‑149 (MQ=255) agccagccGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCg > 2:3125761/1‑149 (MQ=255) ccagccGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGcc < 1:848360/149‑1 (MQ=255) gccGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGTATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAg > 1:1893559/1‑149 (MQ=255) gccGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGAAGTTATCGCCCAg > 2:2373386/1‑149 (MQ=255) gTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGt < 2:383167/149‑1 (MQ=255) tctcCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTg > 1:1047560/1‑149 (MQ=255) tctcCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTg > 1:194080/1‑149 (MQ=255) ctcCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGc < 1:2515084/149‑1 (MQ=255) ctcCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGc > 1:3114515/1‑149 (MQ=255) ctcCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGc > 1:2088426/1‑149 (MQ=255) tcCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCg < 2:3658423/149‑1 (MQ=255) tcCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCg > 1:1344929/1‑149 (MQ=255) tcCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCg < 2:572403/149‑1 (MQ=255) ccACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCgg > 1:3125434/1‑149 (MQ=255) cccAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCAc < 1:2538660/149‑1 (MQ=255) cAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACgg > 1:453032/1‑149 (MQ=255) catcatCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGGAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCa < 1:303939/149‑1 (MQ=255) catcatCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCa < 1:524712/149‑1 (MQ=255) catcatCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCa < 1:304627/149‑1 (MQ=255) atcatcACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCAt > 1:1287014/1‑149 (MQ=255) atcatcACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCAt < 2:771461/149‑1 (MQ=255) atcaCCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTg > 2:1163691/1‑149 (MQ=255) accacGCCCTCGCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAg < 2:2219937/149‑1 (MQ=255) ccacGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGt > 2:3069687/1‑149 (MQ=255) cGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCt < 2:424390/149‑1 (MQ=255) cGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCt < 1:1239854/149‑1 (MQ=255) aCCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTg > 2:2273998/1‑149 (MQ=255) aCCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTg > 2:3138035/1‑149 (MQ=255) ccTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGc > 2:1643480/1‑149 (MQ=255) tctcCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCg > 2:2834772/1‑149 (MQ=255) tctcCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCg < 1:2039201/149‑1 (MQ=255) tcCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCgaa > 2:2243016/1‑149 (MQ=255) ccGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCgaag > 1:3312284/1‑149 (MQ=255) cTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGt < 1:400526/149‑1 (MQ=255) gCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCt < 2:665320/149‑1 (MQ=255) aTGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCtat < 1:898888/149‑1 (MQ=255) tgtgCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCtatt < 1:3832376/149‑1 (MQ=255) cACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTg > 1:1095483/1‑149 (MQ=255) acgacgACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTgg < 1:1749867/149‑1 (MQ=255) acgacgACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTgg < 2:1570128/149‑1 (MQ=255) cgacgaCTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGt < 1:2027669/149‑1 (MQ=255) cgacgaCTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGt < 2:184602/149‑1 (MQ=255) gacgacTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTg < 1:34236/149‑1 (MQ=255) gacgacTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTg > 1:114987/1‑149 (MQ=255) gacgacTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTg > 2:530744/1‑149 (MQ=255) acgacTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGa > 1:1473925/1‑149 (MQ=255) gacTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAAc < 1:4015685/149‑1 (MQ=255) acTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACg > 2:1823650/1‑149 (MQ=255) cTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGa > 2:2437472/1‑149 (MQ=255) tCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATca < 1:2432320/149‑1 (MQ=255) cTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATcaa < 2:3310696/149‑1 (MQ=255) cTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATcaa < 2:3279274/149‑1 (MQ=255) ggAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATcaaca < 2:1255128/149‑1 (MQ=255) gAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATcaacaa > 2:2881145/1‑149 (MQ=255) aaaTCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACaaa < 2:251413/149‑1 (MQ=255) aaTCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAg > 1:65396/1‑149 (MQ=255) aaTCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAg < 1:2148332/149‑1 (MQ=255) aaTCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAg < 2:4036487/149‑1 (MQ=255) aTCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAgg < 2:3109884/149‑1 (MQ=255) aTCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAgg > 1:1376489/1‑149 (MQ=255) tCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAggg > 1:1617211/1‑149 (MQ=255) cGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGc > 1:610678/1‑149 (MQ=255) cGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGc > 1:2674587/1‑149 (MQ=255) cGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCAc > 1:3535927/1‑149 (MQ=255) cGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCAc < 2:3301366/149‑1 (MQ=255) cGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCAc < 2:829135/149‑1 (MQ=255) gtgtTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACt > 1:718218/1‑149 (MQ=255) gtTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAg < 2:259135/149‑1 (MQ=255) ttGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGc > 1:1458113/1‑149 (MQ=255) gAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGcac < 2:3062357/149‑1 (MQ=255) gAAAGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGcac > 1:919036/1‑149 (MQ=255) aaGGTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCta < 2:1071637/103‑1 (MQ=255) ggTGACATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCt < 2:1002001/149‑1 (MQ=255) cATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTc > 1:2871410/1‑149 (MQ=255) cATGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTc < 2:2094588/149‑1 (MQ=255) aTGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTcc < 1:370373/149‑1 (MQ=255) aTGGGTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTcc > 2:1967960/1‑149 (MQ=255) gTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCctctc > 2:3158604/1‑149 (MQ=255) gTGACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCctctc < 1:3170334/149‑1 (MQ=255) gACGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTa > 2:815611/1‑149 (MQ=255) cGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTaaa > 1:3446446/1‑149 (MQ=255) cGTGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTaaa > 1:3801070/1‑149 (MQ=255) tGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATa > 2:3749132/1‑149 (MQ=255) tGCAGCATTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATa > 2:624094/1‑149 (MQ=255) gcaTTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCt > 1:875835/1‑149 (MQ=255) caTTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTa < 1:95300/149‑1 (MQ=255) aTTTTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTAt < 2:1754969/149‑1 (MQ=255) ttttGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATc < 2:3552871/149‑1 (MQ=255) tGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATGTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCAACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGa < 2:2599608/149‑1 (MQ=255) | AACGCGACTTAGCCAGCCGCATTGTCTCCACCCAGCATCATCACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGA > CP009273/3612138‑3612428 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |