| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,860,159 | C→A | 100% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,860,159 | 0 | C | A | 98.0% | 563.7 / ‑4.1 | 201 | P33P (CCG→CCT) | ibpB | heat shock chaperone |
| Reads supporting (aligned to +/- strand): ref base C (2/0); major base A (67/125); minor base G (5/0); total (76/125) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.96e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 201 total aligned reads displayed.
TTTTCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGCGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGA > CP009273/3860014‑3860302 | tttCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGa > 2:3645872/1‑149 (MQ=255) tcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTg < 2:1533193/149‑1 (MQ=255) cttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTgg < 2:1190798/149‑1 (MQ=255) ttttGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGc > 1:1000597/1‑149 (MQ=255) ttttGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATGAATGTTTTACGGAGGGAAGCTCTGGc > 1:225008/1‑149 (MQ=255) tttGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCt < 1:3711377/149‑1 (MQ=255) tGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCttt < 2:790921/149‑1 (MQ=255) tGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCttt < 1:3280921/149‑1 (MQ=255) ggCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTc < 2:2083090/149‑1 (MQ=255) gctgctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCa < 2:3590388/149‑1 (MQ=255) gctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGACTCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCGCAAGGTTGTACGGAGGGCAGCGCGGGCGTTCACCg > 2:1221398/1‑149 (MQ=255) gctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCg > 2:984384/1‑149 (MQ=255) gctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCg > 1:4100326/1‑149 (MQ=255) tCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGc < 1:3704144/149‑1 (MQ=255) gCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGttt < 1:2378008/149‑1 (MQ=255) tGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGc < 1:1571137/149‑1 (MQ=255) tGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGc < 2:2996316/149‑1 (MQ=255) gCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCa < 2:3988179/149‑1 (MQ=255) gCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCAACGGCGTTTTTCa > 2:2871338/1‑149 (MQ=255) cTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑t < 1:2958381/149‑1 (MQ=255) ttttACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑Tg < 1:3018166/149‑1 (MQ=255) ttttACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGGTTTGCAG‑Tg > 2:3225536/1‑149 (MQ=255) tttACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTGAATGGTGTACGGCGGGAAGCTCTGGCTTTCACCGGCGGTTTGGAG‑Tgg > 1:2681612/1‑148 (MQ=255) aCGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGtt < 1:598506/149‑1 (MQ=255) gCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTgg < 2:3400510/149‑1 (MQ=255) tCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGcc < 1:735357/149‑1 (MQ=255) ggCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATTCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGt < 1:236891/149‑1 (MQ=255) gcgcGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGtt < 1:304639/149‑1 (MQ=255) gcgTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATTGTTTAAGGAGGGAAGCTCTGGCGTTCACCCGCGTTTTTCAG‑TGCGTTTGCCacgttg > 2:724612/1‑144 (MQ=255) gTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTc < 1:2980631/149‑1 (MQ=255) tACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTCAAATTTTTTAGGAGGGAAGCTCTGGGTTTGACCGGCGGGTTTCAG‑TGCGGTGGCCCGTTTGtga > 1:203472/1‑147 (MQ=255) tACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATGAATGTTGTACGGAGGGAAGCTCTGGCTTTAACCCGCGTTTTGCAG‑TGCGGTGGCCAGGTTGtaa > 1:3256727/1‑147 (MQ=255) ccTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTGTCAATGTTGTAAGGAGGGAAGCGCTGGCGTTCACCGGCGGTTTGCAG‑TGCGTTGGCCAGTTTGTCaaa > 1:2066882/1‑149 (MQ=255) cTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCaaaa < 2:2157256/149‑1 (MQ=255) ttCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCACTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAAc > 2:676278/1‑149 (MQ=255) ttCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTAAGGAGGGAAGCTCTGGCTTTCACCGGCGGTTTGCAG‑TGCGTTGGCCCGGTTGTGaaaaa > 2:1449121/1‑148 (MQ=255) aGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGAt < 1:1238200/149‑1 (MQ=255) aGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGAt < 1:3301982/149‑1 (MQ=255) gTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTGAATGTTTTTAGGAGGGAAGCGCTGGCGTTAACCGGCGGGTTGGAG‑TGCGGTGGCCAGTTTGTGAAAAACGAtg > 1:674157/1‑148 (MQ=255) gTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCCATTTTGTACGGAGGGAAGCTCTGGCTTTCAACGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTAAAAACCGATc > 2:3244655/1‑149 (MQ=255) gTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATc < 2:77606/149‑1 (MQ=255) gTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATc < 2:3509975/149‑1 (MQ=255) tctcTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGa < 1:1694488/149‑1 (MQ=255) tctcTAAATATTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAATCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGa < 1:4069211/149‑1 (MQ=255) ctctAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGAc < 1:2247534/149‑1 (MQ=255) tAAATCGTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCa < 2:3268732/149‑1 (MQ=255) aaTCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATc < 1:1400691/149‑1 (MQ=255) aaTCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATc < 1:3291725/149‑1 (MQ=255) tCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAg < 1:950089/149‑1 (MQ=255) tCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGTTGTAAGGAGGGAATCTCTTGCTTTCAACGGCGTTTTTGAG‑TGGGTTTGGCCGTTTTTGAAAAACGATACAATTTCGCATCAGTgg > 2:425569/1‑149 (MQ=255) ccTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTggg < 2:2622901/149‑1 (MQ=255) tGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTGAATGTTTTTAGGAGGGAATCTCTGGGGTTGAACGGCGGTTTGGAGTTGGGTTGGCC‑GTTTTTGAAAAAAGATGCAATGTCGCATAAGTggggg > 1:3609043/1‑148 (MQ=255) tGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGa < 1:1075381/149‑1 (MQ=255) tGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGa < 1:1454153/149‑1 (MQ=255) tGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGa < 1:1621055/149‑1 (MQ=255) gACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGAt < 2:2597694/149‑1 (MQ=255) aCGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATa < 1:3442561/149‑1 (MQ=255) ggAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATaaa > 2:4068143/1‑149 (MQ=255) ggAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATaaa > 2:4004511/1‑149 (MQ=255) ggAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAAAGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTTCAG‑TGCGTTGGCCAGTTTTTCAAAAACGATCCAATGACGCATCAGTGGGGGTaaa > 2:1968561/1‑149 (MQ=255) gAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAAt < 1:3631311/149‑1 (MQ=255) gAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCGTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGCTAAAt > 2:1658290/1‑149 (MQ=255) aaaCCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATc < 1:894213/149‑1 (MQ=255) ccTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGaa < 1:1759402/149‑1 (MQ=255) gCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGtt < 1:571908/149‑1 (MQ=255) cAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTAc < 1:819340/149‑1 (MQ=255) gcgcAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCAACCGCGGTTTGGAG‑TTGGGTGGGCCCTTTGTGAAAAACCATCCAATGACGCATCCCTGGGGCTGAATCGAAGTTACGc > 2:3817644/1‑149 (MQ=255) cgcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCa < 2:2241951/149‑1 (MQ=255) cgcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTCCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCa < 2:1730721/149‑1 (MQ=255) cAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATa < 2:292837/149‑1 (MQ=255) cAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATa < 1:3464796/149‑1 (MQ=255) cAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGGTGGCCAGTTTGTCAAAACCGATCCCTTGACGCCTCAGTGGGGATAAAACGAAGTTACGCATa > 2:1025263/1‑149 (MQ=255) gggTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTTGCCAGTTTGTCAAAAACGAACCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTc > 2:637913/1‑149 (MQ=255) gggTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTc < 2:2797554/149‑1 (MQ=255) ggTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCa < 1:979140/149‑1 (MQ=255) ggTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCa < 1:3057277/149‑1 (MQ=255) tAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCAACGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCAATGACGCATCACTGGGGCTAAAACGAAGTTAAGCATAGTAAtt > 2:3378613/1‑149 (MQ=255) aTGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTtc < 1:411483/149‑1 (MQ=255) gCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTtctc < 2:382431/149‑1 (MQ=255) gTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCtt < 1:1523799/149‑1 (MQ=255) tGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTaa < 2:2430257/149‑1 (MQ=255) tGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTaa < 1:2599576/149‑1 (MQ=255) ttATCGTCGCTTTTCTCAATTTTGTACGGAGGGAAGCTCTGGCTTTAAACGGCGTTTTGCAG‑TTCGTTGGCCAGTTTGTCAAAAACGATCCATTTAAGCAACAGTGGGGATAAATAGAACTTAAGCATATTCATTTATACTTCTaagaa > 2:2305333/1‑149 (MQ=255) tcgtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCg < 2:849718/149‑1 (MQ=255) cgtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGa < 1:4004749/149‑1 (MQ=255) cgtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTAAGCAAAGTCATTTCTCCTTCTAAGAAgaga > 2:1633906/1‑149 (MQ=255) gtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGag < 1:3504096/149‑1 (MQ=255) cgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagta < 1:3372805/149‑1 (MQ=255) cgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagta < 2:898994/149‑1 (MQ=255) tcAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTg > 2:332634/1‑149 (MQ=255) aaTGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCa > 1:285397/1‑149 (MQ=255) aaTGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCa > 1:1360049/1‑149 (MQ=255) aTGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCaa > 1:2047565/1‑149 (MQ=255) aTGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAAACGATCCATTGACGCATCAGTGGGGATAAAACGAAGTTACGCAAAGTCATTTCTCCTTCTAAGAAGCGAGAAAGTAccatcaa > 1:2308156/1‑144 (MQ=255) gttgtACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAAt > 2:2685098/1‑149 (MQ=255) gttgtACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAAt < 1:341722/149‑1 (MQ=255) gtACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTCAGAAGCGAGTAAGTACCTGCAAATCCg > 2:1134308/1‑149 (MQ=255) tACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGa > 2:20307/1‑149 (MQ=255) tACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGa < 2:480551/149‑1 (MQ=255) tACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCCAAACATTGAAGCATCAGTGGGGATAAATCGAAGATACGCATACTCAATTCTCCTTCTAAGAATCGAGTAAGTACCAGCAAATCAGa > 2:1826071/1‑149 (MQ=255) | TTTTCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGCGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAG‑TGCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGA > CP009273/3860014‑3860302 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |