| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,934,426 | G→T | 35.2% | Q88K (CAG→AAG) | yieP ← | putative transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,934,426 | 0 | G | T | 35.2% | 483.5 / 272.3 | 309 | Q88K (CAG→AAG) | yieP | putative transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (96/104); new base T (64/45); total (160/149) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.53e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 310 total aligned reads displayed.
AACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGCCCAGCTCAATCTCACC > CP009273/3934278‑3934573 | aCGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGa < 1:2206054/149‑1 (MQ=255) tATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCa > 2:3512295/1‑149 (MQ=255) tATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCa > 2:83847/1‑149 (MQ=255) tATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAAACAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCa > 1:3108901/1‑149 (MQ=255) ttGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAg > 1:627105/1‑149 (MQ=255) gagaTGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGaa > 1:4021155/1‑149 (MQ=255) gaTGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGaaaa < 1:436090/149‑1 (MQ=255) cgcTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCCGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCACTTCCTGATCAAGAAAATTcc > 2:523261/1‑149 (MQ=255) gcTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCa < 1:1811090/149‑1 (MQ=255) gcTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCa < 1:1812280/149‑1 (MQ=255) cTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAg < 2:2718097/149‑1 (MQ=255) cTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAg < 1:1926638/149‑1 (MQ=255) tttCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGt < 1:841353/149‑1 (MQ=255) tttCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGt > 2:340344/1‑149 (MQ=255) tttCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGt < 1:2900008/149‑1 (MQ=255) ttCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGtt < 2:3005900/149‑1 (MQ=255) gTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGAt < 2:3319403/149‑1 (MQ=255) gTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGAt > 1:2500621/1‑149 (MQ=255) tCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATtg < 2:1940099/149‑1 (MQ=255) ccGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATtgt < 2:1478583/149‑1 (MQ=255) cgcgGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATtgtg < 2:3844444/149‑1 (MQ=255) cgcgGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATtgtg < 2:3422427/149‑1 (MQ=255) ggTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCa > 2:945889/1‑149 (MQ=255) gTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCAt > 1:774784/1‑149 (MQ=255) ccAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGAc > 1:231439/1‑149 (MQ=255) aaCCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGAccc > 2:3657261/1‑149 (MQ=255) ccGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGa < 2:173168/149‑1 (MQ=255) gTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGt > 1:2764420/1‑149 (MQ=255) ttGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTa > 1:1564248/1‑149 (MQ=255) gctgcCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTAcc < 2:2206549/149‑1 (MQ=255) gctgcCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTAcc < 2:4067859/149‑1 (MQ=255) tgcCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCaa < 2:2781152/149‑1 (MQ=255) cAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATtc < 1:1406037/149‑1 (MQ=255) cAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATtc < 2:4112400/149‑1 (MQ=255) cAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATtc > 1:3263121/1‑149 (MQ=255) aGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATtcg < 1:3856855/149‑1 (MQ=255) gTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATtcgc > 1:264603/1‑149 (MQ=255) gcaggcTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATtcgcggtc < 2:3066088/149‑1 (MQ=255) gcaggcTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATtcgcggtc < 1:332497/149‑1 (MQ=255) cTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTcgcggtcgcggt < 2:1824276/149‑1 (MQ=255) ttGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTa < 2:2480882/149‑1 (MQ=255) ttGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTa < 2:792438/149‑1 (MQ=255) ggCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAAc < 2:1614456/149‑1 (MQ=255) cTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCa < 1:1623497/149‑1 (MQ=255) cTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCa < 1:3436595/149‑1 (MQ=255) tCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCAt < 1:2694147/149‑1 (MQ=255) cagacagaTACGCATACCCAGAACGTGATCGATGACCTGATGAATGTTCTCTTCTGTCATCCACCACGTAAGCAATTCCTGATAAAGAAAATTCCAGTTCGTTTGTGGCATGACCCGAGTACCACTTCGCGGTCGCGGTAAAACCATcc < 2:317361/149‑1 (MQ=255) cagacagaTACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATcc < 1:2587383/149‑1 (MQ=255) agacagaTACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATccc < 2:2632420/149‑1 (MQ=255) gacagaTACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCt > 1:2847025/1‑149 (MQ=255) gacagaTACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCt < 1:1861056/149‑1 (MQ=255) gCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGtt > 1:1991862/1‑149 (MQ=255) cATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTa > 1:863847/1‑149 (MQ=255) tAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAAc > 2:2363304/1‑149 (MQ=255) tAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAAc > 1:946375/1‑149 (MQ=255) aCCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGt < 2:1991368/149‑1 (MQ=255) ccAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGtt > 1:3188227/1‑149 (MQ=255) aaaGTGATCGATGACCTGATGAAAGTTCTCATCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGa > 2:1283094/1‑149 (MQ=255) aaGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGAc < 1:204370/149‑1 (MQ=255) tCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTc < 1:3684591/149‑1 (MQ=255) naTGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTcgc > 1:1098777/2‑149 (MQ=255) gATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTcgc > 2:604551/1‑149 (MQ=255) aTGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTcgcg > 1:3549522/1‑149 (MQ=255) aTGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTcgcg < 1:3512437/149‑1 (MQ=255) tGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGt > 1:3836524/1‑149 (MQ=255) gACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTa < 1:3018728/149‑1 (MQ=255) aCCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAc > 1:1735713/1‑149 (MQ=255) aCCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAc > 1:545989/1‑149 (MQ=255) ccTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCTGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAcc < 2:704338/149‑1 (MQ=255) ccTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAcc < 2:1637805/149‑1 (MQ=255) ccTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAcc < 1:1492934/149‑1 (MQ=255) tgatgaAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGc > 1:1179506/1‑149 (MQ=255) atgaAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCATTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTg > 2:1544541/1‑149 (MQ=255) gaAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTa < 1:3932322/149‑1 (MQ=255) aaaGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTAc < 2:2550818/149‑1 (MQ=255) gTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGac > 1:495862/1‑149 (MQ=255) gTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGac < 2:3226134/149‑1 (MQ=255) tctcTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGactc > 1:1044387/1‑149 (MQ=255) ctctTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGactca > 1:2154645/1‑149 (MQ=255) tGTCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCaa > 2:245754/1‑149 (MQ=255) tGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCaa > 1:3819321/1‑149 (MQ=255) gTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCaaa > 2:2144348/1‑149 (MQ=255) tCATCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAAt > 2:2029005/1‑149 (MQ=255) tCCACCAGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGc > 2:3975094/1‑149 (MQ=255) tCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCGAATTGc > 1:3225466/1‑149 (MQ=255) tCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGc < 1:2252231/149‑1 (MQ=255) tCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGc > 1:2469433/1‑149 (MQ=255) ccaccaGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCt > 1:824290/1‑149 (MQ=255) caccaGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTc < 2:2417307/149‑1 (MQ=255) accaGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCg > 2:818810/1‑149 (MQ=255) caGGTAAGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGcc > 1:725996/1‑149 (MQ=255) tAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGCCCAGc > 1:2883453/1‑149 (MQ=255) aGCAATTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGCCCAGCTc < 1:4079278/149‑1 (MQ=255) aGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGCCCAGCTc < 1:2375510/149‑1 (MQ=255) gCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGCCCAGCTCa > 2:3914175/1‑149 (MQ=255) gCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGCCCAGCTCa < 2:216305/149‑1 (MQ=255) aTTCCTTATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGCCCAGCTCAAtc < 1:1619810/149‑1 (MQ=255) ccTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGCCCAGCTCAATCTCa < 2:3784900/149‑1 (MQ=255) tGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGCCCAGCTCAATCTCAcc > 1:1355008/1‑149 (MQ=255) tGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGCCCAGCTCAATCTCAcc > 2:1186869/1‑149 (MQ=255) | AACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATTGCTCGCCCAGCTCAATCTCACC > CP009273/3934278‑3934573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |