| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,235,916 | G→T | 100% | N144K (AAC→AAA) | malE ← | maltose transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,235,916 | 0 | G | T | 95.9% | 857.8 / 19.8 | 284 | N144K (AAC→AAA) | malE | maltose transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (6/6); new base T (122/149); total (129/155) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Polymorphic base substitution creates a homopolymer stretch. | |||||||||||
Only 100 of 287 total aligned reads displayed.
TAACCCCCGTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCGCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTGTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGCCAGATTGAGCGT > CP009273/4235770‑4236061 | aaCCCCCGTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTta > 2:3671598/1‑149 (MQ=255) cccccGTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTtata > 2:1078865/1‑149 (MQ=255) cccGTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATaaa < 1:1188480/149‑1 (MQ=255) cccGTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATaaa < 1:3343278/149‑1 (MQ=255) cccGTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATaaa < 2:1296289/149‑1 (MQ=255) cccGTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTGTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATaaa < 2:2866364/149‑1 (MQ=255) ccGTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAAt < 1:2626658/149‑1 (MQ=255) ccGTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAAt < 2:3399764/149‑1 (MQ=255) ccGTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAAt > 2:805404/1‑149 (MQ=255) gTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCa < 1:478611/149‑1 (MQ=255) tCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAg > 1:1538204/1‑149 (MQ=255) tCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAg > 2:3538456/1‑149 (MQ=255) gcagcaATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGa > 1:3007046/1‑149 (MQ=255) gcaATCAGCGGCCAGTTGAAGTACGGTTCTTGCAGGTTGATCATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGTATCTCTTCCCAGTTTTTTGGCGGGTTCGTCAGCAGATCTTTTTTATAAATCAGCGATaa < 2:2810812/149‑1 (MQ=255) gcaATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATaa < 2:1004778/149‑1 (MQ=255) aGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTc > 2:710685/1‑149 (MQ=255) aGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTc < 1:1167058/149‑1 (MQ=255) ggCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAAc < 2:2155208/149‑1 (MQ=255) ggCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAAc < 1:1373096/149‑1 (MQ=255) gTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGAt < 2:1759899/149‑1 (MQ=255) gAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCg < 1:531942/149‑1 (MQ=255) gAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCg > 1:2592625/1‑149 (MQ=255) aaGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCgg < 2:1371126/149‑1 (MQ=255) aaGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCgg > 1:819147/1‑149 (MQ=255) gTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGt > 1:2286436/1‑149 (MQ=255) gTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCa < 1:365748/149‑1 (MQ=255) ttCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCaa > 1:2616859/1‑149 (MQ=255) tCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCGCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTGTTATAAATAAGCGATAACGCTTCAACAGCGATCGGGTAAGCAAt > 1:1156588/1‑149 (MQ=255) gCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGc > 1:2346110/1‑149 (MQ=255) gCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGc < 2:820135/149‑1 (MQ=255) cAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCt < 2:2637932/149‑1 (MQ=255) ggTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGGTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTg > 1:3200265/1‑149 (MQ=255) ttGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTCTAAATAAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGcc > 2:3992619/1‑149 (MQ=255) ttGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGcc < 2:2079608/149‑1 (MQ=255) aaCATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGtt > 2:964862/1‑149 (MQ=255) cATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGt < 1:76302/149‑1 (MQ=255) tCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCCGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTaa > 1:147649/1‑149 (MQ=255) aGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGTCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACg > 2:1474055/1‑149 (MQ=255) aGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACg > 2:1821140/1‑149 (MQ=255) aGCGCGCTCTGACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACg < 1:3688781/149‑1 (MQ=255) gcgcgcTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGt < 1:101218/149‑1 (MQ=255) gcgcgcTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGt > 1:1021315/1‑149 (MQ=255) gcgcgcTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGt > 2:2207280/1‑149 (MQ=255) gcgcgcTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGt > 2:267810/1‑149 (MQ=255) gcgcgcTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGt > 2:3200712/1‑149 (MQ=255) cgcgcTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTa < 1:2419428/149‑1 (MQ=255) cgcgcTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTa < 2:1009956/149‑1 (MQ=255) ctctTACCTTTCGCTTTCATTTCTTTATCCAGCGCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTGTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACCGc > 2:490826/1‑149 (MQ=255) ctctTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGc < 2:821651/149‑1 (MQ=255) tctTACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTACCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCa > 2:10330/1‑149 (MQ=255) ttACCTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCATCGATAACGCTTAAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATc > 2:3976076/1‑149 (MQ=255) ccTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCa < 1:2463627/149‑1 (MQ=255) ccTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATAGGGTAAGCAATCAGCTTGCCGTTGTAACGTAAGGCATCCCa > 2:1059039/1‑149 (MQ=255) cTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAg < 1:1765276/149‑1 (MQ=255) cTTTCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAg < 1:3158058/149‑1 (MQ=255) tttCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCTGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAgg > 1:341659/1‑149 (MQ=255) tttCGCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAgg > 2:253682/1‑149 (MQ=255) gCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTaaa < 2:4073093/149‑1 (MQ=255) gCTTTCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTaaa < 1:3265448/149‑1 (MQ=255) tttCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCTGTTGTAACGTACGGCATCCCAGGTAAACg < 1:2708863/149‑1 (MQ=255) tCAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGa > 2:4071030/1‑149 (MQ=255) cAGTTCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGAt < 1:3083133/149‑1 (MQ=255) tCTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAg > 2:2257138/1‑149 (MQ=255) cTTTATCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGc < 2:3503743/149‑1 (MQ=255) tCCAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTc > 2:304151/1‑149 (MQ=255) ccatctccGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTcc < 2:1398704/143‑1 (MQ=255) ccAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTcc < 1:3538456/149‑1 (MQ=255) ccAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTcc > 1:2163191/1‑149 (MQ=255) cAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCt < 1:2192272/149‑1 (MQ=255) cAGCTCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCt > 2:876246/1‑149 (MQ=255) gctccGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTgg > 1:2914464/4‑149 (MQ=255) gggATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGc < 1:614208/149‑1 (MQ=255) gggATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGc < 1:1562978/149‑1 (MQ=255) gggATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTGTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGc > 1:2795353/1‑149 (MQ=255) ggATCTCGTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCACTCAGCTTGACGTTGTAACGTACGGCATCCCAGGTTCACGGATACAGCTTGTCCTGGACCGCt < 1:1638426/149‑1 (MQ=255) gATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCtt < 1:2057512/149‑1 (MQ=255) gATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCtt < 1:1912011/149‑1 (MQ=255) gATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCtt > 1:2200400/1‑149 (MQ=255) gATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCtt < 2:1048702/149‑1 (MQ=255) tctcTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTg > 2:1169234/1‑149 (MQ=255) ctTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTcc < 2:977024/149‑1 (MQ=255) cccAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCggg < 2:2920045/149‑1 (MQ=255) cAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGt > 1:1927565/1‑149 (MQ=255) gTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGAt > 2:1142431/1‑149 (MQ=255) gTTTTTGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGAt < 2:1913782/149‑1 (MQ=255) ttttGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGAttt < 2:3580396/149‑1 (MQ=255) tttGGCGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTc > 2:3540852/1‑149 (MQ=255) cGGGTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCa > 1:856648/1‑149 (MQ=255) ggTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAAc < 2:1538204/149‑1 (MQ=255) gTTCGGCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACa < 2:2447926/149‑1 (MQ=255) ggCAGCAGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGcc > 2:1592547/1‑149 (MQ=255) gcagcaGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGCCa > 1:2554128/1‑149 (MQ=255) gcagcaGATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGCCa > 1:487919/1‑149 (MQ=255) gcagATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGCCAGAt > 2:2333208/1‑149 (MQ=255) gcagATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGCCAGAt > 1:901426/1‑149 (MQ=255) cagATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGCCAGAtt > 2:3237860/1‑149 (MQ=255) agATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGCCAGATTg > 1:3914347/1‑149 (MQ=255) gATCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGCCAGATTGa < 1:2630438/149‑1 (MQ=255) aTCTTTTTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGCCAGATTGAg < 2:2286436/149‑1 (MQ=255) ttttttATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGCCAGATTGAGCGt > 2:1705284/1‑149 (MQ=255) | TAACCCCCGTCAGCAGCAATCAGCGGCCAGGTGAAGTACGGTTCTTGCAGGTTGAACATCAGCGCGCTCTTACCTTTCGCTTTCAGTTCTTTATCCAGCGCCGGGATCTCTTCCCAGGTTTTTGGCGGGTTCGGCAGCAGATCTTTGTTATAAATCAGCGATAACGCTTCAACAGCGATCGGGTAAGCAATCAGCTTGCCGTTGTAACGTACGGCATCCCAGGTAAACGGATACAGCTTGTCCTGGAACGCTTTGTCCGGGGTGATTTCAGCCAACAGGCCAGATTGAGCGT > CP009273/4235770‑4236061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |