Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 4,358,920 | G→T | 100% | R147L (CGC→CTC) | fxsA → | suppressor of F exclusion of phage T7 |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 4,358,920 | 0 | G | T | 99.6% | 740.0 / ‑4.4 | 226 | R147L (CGC→CTC) | fxsA | suppressor of F exclusion of phage T7 |
Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (91/134); total (92/134) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.07e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 227 total aligned reads displayed.
ACTTTTATTGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGC > CP009273/4358774‑4359064 | cTTTTATTGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGa < 1:2569467/149‑1 (MQ=255) ttttATTGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGAc > 1:1009834/1‑149 (MQ=255) ttttATTGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGAc < 1:1579045/149‑1 (MQ=255) tttATTGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGAcc < 1:2440715/149‑1 (MQ=255) ttGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCt < 1:3918695/149‑1 (MQ=255) ttGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCt < 1:121740/149‑1 (MQ=255) ttGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCt > 2:3442796/1‑149 (MQ=255) ttGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCt < 1:2197391/149‑1 (MQ=255) tGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCtt < 2:1036162/149‑1 (MQ=255) tGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCtt < 1:1795064/149‑1 (MQ=255) tGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCtt < 1:1572437/149‑1 (MQ=255) gccgccGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTg < 1:337866/149‑1 (MQ=255) cgccgGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGAt < 1:1581632/149‑1 (MQ=255) cgccgGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGAt > 2:255188/1‑149 (MQ=255) cgGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCAt < 2:4098750/149‑1 (MQ=255) ggTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATa > 1:1622714/1‑149 (MQ=255) ggTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATa > 1:3670081/1‑149 (MQ=255) cAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGa < 2:4006393/149‑1 (MQ=255) aaaaGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGAc < 1:2946458/149‑1 (MQ=255) aGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGAt > 1:1281231/1‑149 (MQ=255) aTCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGc > 1:3013328/1‑149 (MQ=255) tCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGcc < 1:3156084/149‑1 (MQ=255) tGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAg < 2:3471773/149‑1 (MQ=255) tGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAg > 1:3195508/1‑149 (MQ=255) tGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAg < 2:3470979/149‑1 (MQ=255) cAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGAt < 1:663959/149‑1 (MQ=255) aGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGAtt < 2:2111289/149‑1 (MQ=255) gTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTa > 2:1761204/1‑149 (MQ=255) tGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTaa < 1:849539/149‑1 (MQ=255) tGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTaa < 2:213037/149‑1 (MQ=255) gTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTc > 1:3385173/1‑149 (MQ=255) ttGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCg > 2:2761371/1‑149 (MQ=255) gATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGaa > 2:336326/1‑149 (MQ=255) gCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCg > 2:2096000/1‑149 (MQ=255) ttGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGAtt > 1:1080657/1‑149 (MQ=255) gcTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTAtgt > 1:247673/1‑149 (MQ=255) cTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTAtgtg > 2:215886/1‑149 (MQ=255) ttttCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTgg > 1:397735/1‑149 (MQ=255) tttCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGt < 1:305891/149‑1 (MQ=255) tttCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGt > 1:3714020/1‑149 (MQ=255) tctcGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTa < 2:490906/149‑1 (MQ=255) ctcGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTAt < 2:2974229/149‑1 (MQ=255) ctcGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTAt > 2:3011237/1‑149 (MQ=255) tcGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTTATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATg > 1:1070889/1‑149 (MQ=255) tcGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATg > 1:3949027/1‑149 (MQ=255) gCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGcc < 2:3623892/149‑1 (MQ=255) gCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGcc < 2:1577186/149‑1 (MQ=255) gCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCAttt > 1:2055115/1‑149 (MQ=255) tGGCGGCGGTTTTCGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTcc < 2:1080449/149‑1 (MQ=255) ggcggcGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCg > 2:1705552/1‑149 (MQ=255) ggcggcGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCg < 2:3286398/149‑1 (MQ=255) ggTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGttt > 2:785073/1‑149 (MQ=255) gTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGtttt < 2:856985/149‑1 (MQ=255) gTTTTAGCGCCGGGACCGGGGGCGGTAATACTTTTGATGGTGAGTACCAGCTAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGtttt < 1:3595729/149‑1 (MQ=255) ttttAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGttttt < 2:542058/149‑1 (MQ=255) ttAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCg > 1:2816633/1‑149 (MQ=255) aGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGtt < 1:2689190/149‑1 (MQ=255) gcgcCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAGGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGttt < 2:1994333/149‑1 (MQ=255) gcgcCGGGACCGGGGGCGTTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGCGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGttt < 1:1043038/149‑1 (MQ=255) gcCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTg > 1:2640246/1‑149 (MQ=255) gggACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGgca > 2:3110281/1‑149 (MQ=255) ggTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACa < 1:2000375/149‑1 (MQ=255) gTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAg > 1:1483201/1‑149 (MQ=255) ggCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGcc > 2:1874842/1‑149 (MQ=255) ggCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGATTTGGCAGCAACAGcc < 1:503548/149‑1 (MQ=255) ggTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATa < 2:1281231/149‑1 (MQ=255) ggTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATa < 1:3443512/149‑1 (MQ=255) tAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAAc > 1:2029571/1‑149 (MQ=255) tAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAAc > 2:340123/1‑149 (MQ=255) aaTACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAAcc > 2:1432062/1‑149 (MQ=255) aTACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAAccc < 1:3322874/149‑1 (MQ=255) tACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAAcccc > 2:3864885/1‑149 (MQ=255) aCTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCg < 1:3776304/149‑1 (MQ=255) tttGATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCa < 1:3287816/149‑1 (MQ=255) gATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCa < 1:3556992/149‑1 (MQ=255) gATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCa < 2:3736279/149‑1 (MQ=255) gATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCa < 1:2364126/149‑1 (MQ=255) gATGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCa < 2:1167529/149‑1 (MQ=255) aTGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCAt < 2:1739703/149‑1 (MQ=255) tGGTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATg < 2:1138465/149‑1 (MQ=255) ggTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGa > 2:3940821/1‑149 (MQ=255) ggTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGa < 2:31228/149‑1 (MQ=255) gTGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGAt < 1:2034194/149‑1 (MQ=255) tGAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATc < 2:161095/149‑1 (MQ=255) gAGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCa > 2:1143370/1‑149 (MQ=255) aGTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAg < 2:1352554/149‑1 (MQ=255) gTACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAgc > 1:2640575/1‑149 (MQ=255) tACCAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAgcg < 1:3236953/149‑1 (MQ=255) cAGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCAt < 2:2627641/149‑1 (MQ=255) aGCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATa > 2:2438420/1‑149 (MQ=255) gCGAAAGGATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGTCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATag > 1:3907246/1‑149 (MQ=255) ggATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACtt < 1:1258449/149‑1 (MQ=255) ggATGATGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACtt < 2:105249/149‑1 (MQ=255) gatgatGAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACttt < 2:3337029/149‑1 (MQ=255) atgatgAGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACtttt > 1:3561226/1‑149 (MQ=255) gatgaGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACttttac > 1:1403169/1‑147 (MQ=255) gatgaGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTcc < 2:1045484/149‑1 (MQ=255) gatgaGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTcc > 2:1502983/1‑149 (MQ=255) gatgaGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTcc > 1:1130768/1‑149 (MQ=255) gaGCTCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGc > 2:587692/1‑149 (MQ=255) | ACTTTTATTGCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGCGGTTTTAGCGCCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCATAAAGACGATCGCCAGGATTAATGTCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGC > CP009273/4358774‑4359064 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |