Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,372,375 C→A 6.5% intergenic (‑240/‑85) frdA ← / → epmA fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit/Elongation Factor P Lys34 lysyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,372,3750CA 6.5% 989.2 / 25.5 268intergenic (‑240/‑85)frdA/epmAfumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit/Elongation Factor P Lys34 lysyltransferase
Reads supporting (aligned to +/- strand):  ref base C (151/98);  new base A (11/7);  total (162/106)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 271 total aligned reads displayed.

TTTATAGGTACAACAGTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTAAAACGCGCGGCGA  >  CP009273/4372227‑4372523
                                                                                                                                                    |                                                                                                                                                    
  tataGGTACAACAGTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGc                                                                                                                                                    <  2:3864761/149‑1 (MQ=255)
    taGGTACAACAGTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTg                                                                                                                                                  >  2:3454140/1‑149 (MQ=255)
     aGGTACAACAGTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGt                                                                                                                                                 >  1:1997464/1‑149 (MQ=255)
     aGGTACAACAGTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGt                                                                                                                                                 >  2:745799/1‑149 (MQ=255)
       gTACAACAGTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGttt                                                                                                                                               >  1:3860526/1‑149 (MQ=255)
       gTACAACAGTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGttt                                                                                                                                               <  1:3898290/149‑1 (MQ=255)
         acaacaGTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGa                                                                                                                                             >  2:3143357/1‑149 (MQ=255)
             caGTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTcc                                                                                                                                         <  1:484805/149‑1 (MQ=255)
              aGTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCt                                                                                                                                        <  2:2495922/149‑1 (MQ=255)
               gTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTg                                                                                                                                       >  1:3991899/1‑149 (MQ=255)
                 ataGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCg                                                                                                                                     >  2:2110737/1‑149 (MQ=255)
                 ataGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACAGCTGTTTGATTCCTGCg                                                                                                                                     >  2:830396/1‑149 (MQ=255)
                  taGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGt                                                                                                                                    >  1:2321246/1‑149 (MQ=255)
                    gTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTaa                                                                                                                                  >  1:1776879/1‑149 (MQ=255)
                     tCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTaaa                                                                                                                                 <  1:991779/149‑1 (MQ=255)
                     tCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTaaa                                                                                                                                 <  2:1967062/149‑1 (MQ=255)
                     tCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTaaa                                                                                                                                 <  2:933050/149‑1 (MQ=255)
                     tCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTaaa                                                                                                                                 >  1:2103394/1‑149 (MQ=255)
                       tGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAAt                                                                                                                               <  1:2397368/149‑1 (MQ=255)
                       tGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAAt                                                                                                                               >  2:3954793/1‑149 (MQ=255)
                        gATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAAtt                                                                                                                              >  1:1811634/1‑149 (MQ=255)
                          tGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGGAAAATTTg                                                                                                                            >  1:3831590/1‑149 (MQ=255)
                           ggATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACAGCTGTTTGATTCCTGCGTAAAATTTGt                                                                                                                           >  1:1318609/1‑149 (MQ=255)
                            gATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGtc                                                                                                                          <  1:3958211/149‑1 (MQ=255)
                                aGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACAGCTGTTTGATTCCTGCGTAAAATTTGTCTCGc                                                                                                                      >  1:1265641/1‑149 (MQ=255)
                                aGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACAGCTGTTTGATTCCTGCGTAAAATTTGTCTCGc                                                                                                                      >  1:3318451/1‑149 (MQ=255)
                                  tCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCg                                                                                                                    <  2:754303/149‑1 (MQ=255)
                                     gAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGACCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTcg                                                                                                                 >  1:1064296/1‑149 (MQ=255)
                                        aTTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGt                                                                                                              <  2:2240953/149‑1 (MQ=255)
                                           tGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGc                                                                                                           <  1:571793/149‑1 (MQ=255)
                                               gagaTCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGt                                                                                                       >  1:782535/1‑149 (MQ=255)
                                               gagaTCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGt                                                                                                       >  1:3692959/1‑149 (MQ=255)
                                                   tCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGAc                                                                                                   <  2:1689427/149‑1 (MQ=255)
                                                    cGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACt                                                                                                  <  2:3970287/149‑1 (MQ=255)
                                                     gATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACtt                                                                                                 >  2:2765861/1‑149 (MQ=255)
                                                       tttttttAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCg                                                                                               >  1:1449173/1‑149 (MQ=255)
                                                       tttttttAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCg                                                                                               >  2:1560637/1‑149 (MQ=255)
                                                        ttttttAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGt                                                                                              <  1:2549228/149‑1 (MQ=255)
                                                         tttttAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTg                                                                                             <  2:427152/149‑1 (MQ=255)
                                                                      agagGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCaaaaa                                                                                >  2:2312856/1‑149 (MQ=255)
                                                                       gagGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAAc                                                                               >  1:1145914/1‑149 (MQ=255)
                                                                          ggCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTgg                                                                            >  1:2713095/1‑149 (MQ=255)
                                                                          ggCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTgg                                                                            >  1:3599261/1‑149 (MQ=255)
                                                                             tAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGgaga                                                                         <  2:3725154/149‑1 (MQ=255)
                                                                               aaTTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGAtt                                                                       <  2:2662158/149‑1 (MQ=255)
                                                                                 ttATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTa                                                                     >  2:699438/1‑149 (MQ=255)
                                                                                 ttATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTa                                                                     <  1:1777487/149‑1 (MQ=255)
                                                                                   aTCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAAc                                                                   <  2:2170637/149‑1 (MQ=255)
                                                                                   aTCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATGTAAc                                                                   >  2:3337511/1‑149 (MQ=255)
                                                                                     cACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTa                                                                 >  2:1488089/1‑149 (MQ=255)
                                                                                      aCTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTAt                                                                >  2:1672681/1‑149 (MQ=255)
                                                                                            gatgatTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGa                                                          >  2:3694822/1‑149 (MQ=255)
                                                                                              tgatTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGaaa                                                        <  1:1001731/149‑1 (MQ=255)
                                                                                               gatTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAAc                                                       >  2:3563462/1‑149 (MQ=255)
                                                                                               gatTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAAc                                                       <  1:3117554/149‑1 (MQ=255)
                                                                                                atTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACg                                                      <  1:459400/149‑1 (MQ=255)
                                                                                                 ttaatttaatTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACgg                                                     >  2:2909245/1‑149 (MQ=255)
                                                                                                  taatttaattACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTCTGAGCGAAACGGc                                                    >  1:1666458/1‑149 (MQ=255)
                                                                                                   aatttaattACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAAc                                                       >  1:2479210/1‑145 (MQ=255)
                                                                                                   aatttaattACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAAc                                                       <  2:2479210/145‑1 (MQ=255)
                                                                                                   aatttaattACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCa                                                   >  1:951419/1‑149 (MQ=255)
                                                                                                    atttaattACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCAt                                                  <  2:62535/149‑1 (MQ=255)
                                                                                                    atttaattACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACAGCTGTTTGATTCCTGCGTAAATTTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCAt                                                  <  1:830396/149‑1 (MQ=255)
                                                                                                       taattACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCt                                               <  1:1942864/149‑1 (MQ=255)
                                                                                                        aattACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTg                                              >  1:3630785/1‑149 (MQ=255)
                                                                                                        aattACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTg                                              >  1:2655091/1‑149 (MQ=255)
                                                                                                         attACTAAACCATAATATCGTTCTTTTTTTAGTCACTGCCCACGGATGTTTGATTCCTGCTTAAAATTTGTCTCGCCGTCGCGTTGCTAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTgg                                             <  1:3175719/149‑1 (MQ=255)
                                                                                                          ttACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGc                                            >  1:2676651/1‑149 (MQ=255)
                                                                                                          ttACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGc                                            >  1:613124/1‑149 (MQ=255)
                                                                                                            aCTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAg                                          >  2:2029136/1‑149 (MQ=255)
                                                                                                             cTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGc                                         >  1:2545879/1‑149 (MQ=255)
                                                                                                               aaaCCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCg                                       >  1:1308289/1‑149 (MQ=255)
                                                                                                                aaCCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGa                                      <  1:2174101/149‑1 (MQ=255)
                                                                                                                   cATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAgcg                                   <  2:3146381/149‑1 (MQ=255)
                                                                                                                    aTCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAgcgc                                  <  2:107470/149‑1 (MQ=255)
                                                                                                                    aTCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTGTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAgcgc                                  >  1:456243/1‑149 (MQ=255)
                                                                                                                    aTCAGATCGTGCTTTTTTGAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAgcgc                                  <  2:2994258/149‑1 (MQ=255)
                                                                                                                     tCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCa                                 >  2:2557889/1‑149 (MQ=255)
                                                                                                                       aGATCGTGCTTTTTTTAGTCACTGCCCACAGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATc                               <  2:1318609/149‑1 (MQ=255)
                                                                                                                           cGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCAtt                           <  1:1604456/149‑1 (MQ=255)
                                                                                                                             tGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTcc                         >  2:125400/1‑149 (MQ=255)
                                                                                                                              gCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCt                        >  1:3493044/1‑149 (MQ=255)
                                                                                                                              gCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCt                        <  2:1235944/149‑1 (MQ=255)
                                                                                                                              gCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCt                        >  1:4063315/1‑149 (MQ=255)
                                                                                                                                 ttttttAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAAc                     <  2:621947/149‑1 (MQ=255)
                                                                                                                                     ttAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACttat                 <  1:428707/149‑1 (MQ=255)
                                                                                                                                     ttAGTCACTGCCCACAGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGACAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACttat                 <  2:595450/149‑1 (MQ=255)
                                                                                                                                       aGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACttatta               >  1:3039088/1‑149 (MQ=255)
                                                                                                                                        gTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTaa              <  1:1847903/149‑1 (MQ=255)
                                                                                                                                          cACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTaaaa            <  2:1883272/149‑1 (MQ=255)
                                                                                                                                          cACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTaaaa            >  1:2994672/1‑149 (MQ=255)
                                                                                                                                           aCTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTAAAAc           >  2:3444809/1‑149 (MQ=255)
                                                                                                                                            cTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTAAAAcg          <  2:1104698/149‑1 (MQ=255)
                                                                                                                                             tGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTAAAAcgc         >  1:3709530/1‑149 (MQ=255)
                                                                                                                                              gCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTAAAAcgcg        >  2:3646947/1‑149 (MQ=255)
                                                                                                                                                ccACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTAAAAcgcgcg      <  1:3520736/149‑1 (MQ=255)
                                                                                                                                                ccACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTAAAAcgcgcg      >  2:2358313/1‑149 (MQ=255)
                                                                                                                                                 cACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTAAAAAGCgcgg     >  1:3786069/1‑149 (MQ=255)
                                                                                                                                                  aCCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTAAAACGCgcggc    >  1:2774385/1‑149 (MQ=255)
                                                                                                                                                    cGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTAAAACGCGCGGCGa  >  1:838866/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TTTATAGGTACAACAGTATAGTCTGATGGATAAGTCTGAAATTTGACGAGATCGATTTTTTTAGTGCGCAAGAGGGCTAAATTATCACTGAAGATGATTAATTTAATTACTAAACCATCAGATCGTGCTTTTTTTAGTCACTGCCCACCGCTGTTTGATTCCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTTGTCAAAAACTGGAGATTTAACTATGAGCGAAACGGCATCCTGGCAGCCGAGCGCATCCATTCCTAACTTATTAAAACGCGCGGCGA  >  CP009273/4372227‑4372523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: