| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,434,260 | C→A | 100% | P111H (CCT→CAT) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,434,260 | 0 | C | A | 99.0% | 655.3 / ‑2.0 | 198 | P111H (CCT→CAT) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base A (119/77); total (119/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 211 total aligned reads displayed.
CGTTCGTTATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCACCTCC > CP009273/4434114‑4434405 | cgttcgttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGcatc < 2:3366086/149‑1 (MQ=255) gttcgttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGcatcc < 1:360252/149‑1 (MQ=255) gttcgttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGcatcc > 2:2463358/1‑149 (MQ=255) gttcgttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGcatcc < 2:3659882/149‑1 (MQ=255) ttcgttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGcatcct > 1:1600097/1‑149 (MQ=255) tcgttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCtt > 1:547122/1‑149 (MQ=255) gttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCt < 2:2108205/149‑1 (MQ=255) ttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTg < 1:3122475/149‑1 (MQ=255) ttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTg > 1:550210/1‑149 (MQ=255) ttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTg > 2:3929605/1‑149 (MQ=255) ttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCGGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTg < 1:1066854/149‑1 (MQ=255) tATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGa > 2:2684378/1‑149 (MQ=255) aTGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGaa < 2:378253/149‑1 (MQ=255) aTGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGaa < 1:3880986/149‑1 (MQ=255) tGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAAc < 2:2828046/149‑1 (MQ=255) tGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAAc > 1:2924/1‑149 (MQ=255) gAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACa > 1:2277210/1‑149 (MQ=255) gAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACa < 1:3357249/149‑1 (MQ=255) gcagcCAGGCGTGGCGGTAAAAGCGGGCCATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAgg > 2:1566579/1‑149 (MQ=255) cagcCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGAAAGTAAAAAAATGCATCCTTCTGAACAGGt < 1:1021171/149‑1 (MQ=255) agcCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGtt > 1:1660071/1‑149 (MQ=255) ccAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTga > 1:3537977/1‑149 (MQ=255) ggCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTgaaga > 1:2898739/1‑149 (MQ=255) gCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTgaagaa < 1:3891917/149‑1 (MQ=255) ggCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAgg < 1:4062360/149‑1 (MQ=255) tAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGAt < 2:1793143/149‑1 (MQ=255) aaaaGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATa < 1:27170/149‑1 (MQ=255) aaaaGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATa < 2:3388902/149‑1 (MQ=255) aaaaGCGGGCAATCGGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCGGGCGCTGAAAGACATTCAGGTCAACCTCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATa < 1:27079/149‑1 (MQ=255) aaGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGc > 1:1329940/1‑149 (MQ=255) aaGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGc > 2:3176641/1‑149 (MQ=255) gggCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTc < 1:1209905/149‑1 (MQ=255) gggCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTc > 2:1571850/1‑149 (MQ=255) aTCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTg > 2:366379/1‑149 (MQ=255) tGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGAt > 1:3603041/1‑149 (MQ=255) tGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGAt > 2:2537893/1‑149 (MQ=255) gCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGAtc < 1:1470441/149‑1 (MQ=255) aTCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGAtctc < 2:550210/149‑1 (MQ=255) ggCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCa > 2:2745786/1‑149 (MQ=255) ggCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCa < 1:940926/149‑1 (MQ=255) gCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCAc > 1:1183016/1‑149 (MQ=255) gTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGcc < 1:3420331/149‑1 (MQ=255) cGGGCTTGAGGGCCTGTGGAACAGCCTTGTTTGTATTAATGATCTGGCGCTTAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAATATAGCGGTCCGCTGGATCTCTCCACGCCGt < 1:2179229/149‑1 (MQ=255) ttGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATccc > 1:2798915/1‑149 (MQ=255) ccTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCAccc > 2:3561104/1‑149 (MQ=255) ccTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCAccc < 2:1027860/149‑1 (MQ=255) ccTGTGGAACAGCAGTGTTTGTATTAATGAGCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCAccc < 2:751826/149‑1 (MQ=255) cTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCt > 2:1377660/1‑149 (MQ=255) gtgGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGa < 2:3820699/149‑1 (MQ=255) gtgGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGa < 1:2734996/149‑1 (MQ=255) gtgGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGa < 2:2572913/149‑1 (MQ=255) gAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGacac > 1:2582060/1‑149 (MQ=255) gAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGacac < 2:615330/149‑1 (MQ=255) agcagTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGt > 1:860939/1‑149 (MQ=255) agcagTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGt < 1:3195578/149‑1 (MQ=255) gcagTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTg > 1:2447735/1‑149 (MQ=255) gcagTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTg < 2:2127763/149‑1 (MQ=255) tgtTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCAc < 2:3940701/149‑1 (MQ=255) tgtTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCAc < 2:1939999/149‑1 (MQ=255) ttGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTgg > 2:1599354/1‑149 (MQ=255) ttGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTgg > 2:1079352/1‑149 (MQ=255) tATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACa > 1:1720608/1‑149 (MQ=255) tATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACa > 2:2047425/1‑149 (MQ=255) aTTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACaa > 1:3484628/1‑149 (MQ=255) aTGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTc > 1:347416/1‑149 (MQ=255) tGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCa > 2:1052708/1‑149 (MQ=255) gATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCaa < 2:2993568/149‑1 (MQ=255) gATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCaa < 2:2993627/149‑1 (MQ=255) aTCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAAc > 2:1814486/1‑149 (MQ=255) tCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACa < 1:2101547/149‑1 (MQ=255) tGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACAtt < 1:843367/149‑1 (MQ=255) cTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGAt < 2:476876/149‑1 (MQ=255) tGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGAtt < 1:1922380/149‑1 (MQ=255) gAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtg > 2:2357457/1‑149 (MQ=255) gAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtg > 2:1376731/1‑149 (MQ=255) gAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtg > 1:799120/1‑149 (MQ=255) aaaGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtga < 2:3406681/149‑1 (MQ=255) aaGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtgat > 1:2040485/1‑149 (MQ=255) gACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtgatga > 1:2601161/1‑149 (MQ=255) gACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtgatga > 2:1269774/1‑149 (MQ=255) ttCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGAcacc < 2:815509/149‑1 (MQ=255) ttCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGAcacc < 2:1465811/149‑1 (MQ=255) ttCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGAcacc < 2:1753403/149‑1 (MQ=255) ttCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACAGTAAGATTGATGAcacc > 2:2964646/1‑149 (MQ=255) ggTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACgg > 1:3952717/1‑149 (MQ=255) ggTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCAAATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACgg > 2:2415163/1‑149 (MQ=255) aaCATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATc < 2:3070287/149‑1 (MQ=255) aTCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGt > 2:2920928/1‑149 (MQ=255) tCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTg > 2:411452/1‑149 (MQ=255) tCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTg > 2:504512/1‑149 (MQ=255) tCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTg > 1:113023/1‑149 (MQ=255) gACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGAt < 1:3646985/149‑1 (MQ=255) aaaaaaaTGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACtt < 1:2684378/149‑1 (MQ=255) aaaaaaaTGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACtt > 1:1281192/1‑149 (MQ=255) aaaaaaTGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTc > 1:190440/1‑149 (MQ=255) aaaaaaTGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTc > 1:2265466/1‑149 (MQ=255) aaaaTGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCAc < 2:1727853/149‑1 (MQ=255) aaTGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCACCt > 2:3407775/1‑149 (MQ=255) tGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCACCTcc > 1:2621657/1‑149 (MQ=255) tGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCACCTcc > 1:2622419/1‑149 (MQ=255) | CGTTCGTTATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCACCTCC > CP009273/4434114‑4434405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |