| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 450,290 | G→A | 100% | intergenic (+45/‑299) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 450,290 | 0 | G | A | 100.0% | 794.7 / NA | 239 | intergenic (+45/‑299) | bolA/tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (115/124); total (115/124) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| Rejected as polymorphism: Polymorphic base substitution creates a homopolymer stretch. | |||||||||||
Only 100 of 242 total aligned reads displayed.
CATGCGCTGGCTCTGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCC > CP009273/450144‑450435 | cATGCGCTGGCTCTGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAAt > 1:1330653/1‑149 (MQ=255) aTGCGCTGGCTCTGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAAtt < 2:1809661/149‑1 (MQ=255) tGCGCTGGCTCTGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAAttt > 2:1321892/1‑149 (MQ=255) cgcTGGCTCTGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTa < 2:2204684/149‑1 (MQ=255) cTGGCTCTGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATg > 1:2196243/1‑149 (MQ=255) tGGCTCTGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGa > 2:3161350/1‑149 (MQ=255) ctctGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGaaaa < 1:3025630/149‑1 (MQ=255) tctGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGaaaaa > 2:2905838/1‑149 (MQ=255) ctGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAAc > 2:3026574/1‑149 (MQ=255) ctGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGAGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAAc > 2:4106531/1‑149 (MQ=255) cATACTTACACTATTAAGGAGTGGGATGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCTGTAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGc < 2:1104676/149‑1 (MQ=255) cTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGc < 1:3359349/149‑1 (MQ=255) ttACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCg < 2:1090560/149‑1 (MQ=255) tACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCgg > 2:2812934/1‑149 (MQ=255) tACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCgg > 1:1454795/1‑149 (MQ=255) cacTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGc < 1:1032518/149‑1 (MQ=255) acTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGcc > 1:1553419/1‑149 (MQ=255) cTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCg > 1:3304028/1‑149 (MQ=255) tATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCgt < 2:58264/149‑1 (MQ=255) ttAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCgttt < 2:3509516/149‑1 (MQ=255) ttAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCgttt < 1:2656278/149‑1 (MQ=255) tatggAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCGCCGCCCTGTCGGGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGATAAAAATTTTATCAAAAACGGCCTGCGGGCCgtttt < 1:1797144/146‑1 (MQ=255) aGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCgttttgt > 2:3972369/1‑149 (MQ=255) gAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCgttttgttt < 2:2487111/149‑1 (MQ=255) gggAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTtttgttttgtg > 2:1897815/1‑148 (MQ=255) gggAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTc > 2:118612/1‑149 (MQ=255) gggAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTc < 1:2178217/149‑1 (MQ=255) ggAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCt < 2:2951017/149‑1 (MQ=255) gAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTCT‑g > 2:1964541/1‑149 (MQ=255) aGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTGTGTTTTTTGT‑GG‑a > 1:3597619/1‑149 (MQ=255) aGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGGTGTTTTTTGT‑ggg > 1:3508883/1‑148 (MQ=255) ggTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑At‑t < 2:1688855/149‑1 (MQ=255) gTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCTTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑At‑tt < 1:97868/149‑1 (MQ=255) gTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑At‑tt < 1:2887539/149‑1 (MQ=255) gCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCTGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTgc < 1:1179920/149‑1 (MQ=255) aGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTtcgc > 2:2567466/1‑149 (MQ=255) acacCGTCTTTCCCTCTCCTCCGTGTCTGGTAGCTGTAAGCATCGAGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCATGTATTTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCttt < 1:1757508/149‑1 (MQ=255) cacCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCtttt < 2:2048831/149‑1 (MQ=255) cacCGTCTGTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCtttt < 2:3829159/149‑1 (MQ=255) ccGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTg < 2:1373927/149‑1 (MQ=255) gTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTGGGTTTTGTCT‑GG‑AT‑TTTGCGCGTTTTGcc > 2:794950/1‑149 (MQ=255) tCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGGTGTTTTGTGT‑GG‑GTGTTTGGGTTTTTTGcc > 1:2479953/1‑149 (MQ=255) cTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCa < 2:1507982/149‑1 (MQ=255) gCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCaa > 2:3707468/1‑148 (MQ=255) gCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCAt < 2:1268653/149‑1 (MQ=255) gCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTGT‑GG‑AT‑TTTGCGCTTTTTGGCCAGCAt > 2:2899954/1‑149 (MQ=255) tctcCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCa < 2:82563/149‑1 (MQ=255) tctcCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTGT‑GG‑AT‑TTTGGGGTTTTTTCCCAGCATTCa > 2:431272/1‑149 (MQ=255) tctcCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGGTTTTTTGTGT‑GGTTT‑TTTGGGTTTTTTGcccgccttca > 1:2917939/1‑142 (MQ=255) cctccCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTCT‑GG‑AT‑TTTTGGGTTTTTTCCCAACAATCATA‑c > 2:1434396/1‑149 (MQ=255) cctccCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑c < 1:202547/149‑1 (MQ=255) ctccCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTCT‑GG‑AT‑TTTGCGGTTTTTGACCAGCATTCAGA‑Cg > 2:3006791/1‑149 (MQ=255) cTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑aaaa < 1:4094078/149‑1 (MQ=255) tGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGGGTTGTTTTTTCT‑TG‑AT‑TTTGCGCATTTTGGCCCGCAGTCAGA‑CC‑aaaaa > 2:1746279/1‑148 (MQ=255) gTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAAtt < 1:3931681/149‑1 (MQ=255) gTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAAtt < 1:255649/149‑1 (MQ=255) gTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTGT‑GG‑AT‑TTTTGGCTTTTTTGCCAGCAATAAAA‑CG‑aaaaat > 1:4057693/1‑147 (MQ=255) gTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTGT‑GG‑AT‑TTTTCGCTTTTTTCCCAGCAATCACA‑CG‑AAAAtt > 1:2343877/1‑149 (MQ=255) ggAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGGTTTGTTTTTTGT‑GG‑GT‑TTTTGGGTTTTTGGCCAACATTAAGT‑CG‑AAAAtttcgcg > 1:2733823/1‑144 (MQ=255) gAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCgg < 1:673824/149‑1 (MQ=255) gCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTGT‑GG‑TT‑TTTTGGCTTTTTTGCCCGCATTGAGA‑AG‑AAAAATG‑CCCgggg > 1:2305034/1‑148 (MQ=255) cAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCATTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGaa < 1:1859871/149‑1 (MQ=255) aGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGGGTTGTTTTTTGTGGG‑TT‑TTTGGGTTTTTTGCCC‑GCATTCAGA‑CG‑AAAAATG‑CGCggggca > 1:1955925/1‑146 (MQ=255) aGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGGGTTGTTTTTTGT‑GG‑GT‑TTTGGGCTTTTTGCCCCGCAGTCAGA‑CG‑AAAAGTG‑GCCgggcag > 2:1181942/1‑146 (MQ=255) ggAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGGTGTTTTTTGT‑GG‑GT‑TTTGGGGTTTTTGGCCCGCCTTCAGAGCA‑AAAAATG‑CCGGGGCAt > 1:791414/1‑149 (MQ=255) gAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTGT‑GG‑AT‑TTTTGGCTTTTTTGCCAGCCTTCAGA‑CG‑AAAATTT‑CCCggggagtg > 2:386434/1‑144 (MQ=255) aaGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATtgt < 2:611832/149‑1 (MQ=255) aaGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGGTTTTTTGTGT‑GG‑GT‑TTTGGGGTTTTTGGCCCCCCATAAGA‑CGAAAAATGG‑CCCgggcgttt > 1:2528763/1‑144 (MQ=255) aGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGGGGTGTGTTTTGT‑GG‑GT‑GTTTGGCTTTTTTGGCAGCCTTAAGA‑CC‑AAAATAT‑CCCggggggttgg > 1:901523/1‑142 (MQ=255) aTCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTCTGTTGCTCAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGGGCTTTTTGCCCAGCAATCAGA‑CG‑AAAATTG‑CCCGGGTCTTGTGtaa > 2:3932109/1‑149 (MQ=255) gTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATa < 2:3655110/149‑1 (MQ=255) aaaaAGAATTTGCAACTGTCGGCGCTTTTCATGTATTTTTATAAAAATTTTATGAAAAACGGCCTGCGGGCCTTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATAcgc < 1:3793891/149‑1 (MQ=255) aaCGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGa < 2:279218/149‑1 (MQ=255) aaCGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTTT‑GG‑TT‑TTTTGGGTTTTTTGCCAGCATTGAGA‑CG‑CAAATTT‑CCCGGGGATTGTGTAAAAAAAagcgg > 1:2621578/1‑148 (MQ=255) aaCGAATTTTAACCTGTGGGCGATTTACCAGTATGTTTCTAAAATTTTTATTAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGa < 1:1744097/149‑1 (MQ=255) cATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTCT‑GG‑TT‑TTTTCGCTTTTAGCCCAGCATTCAGA‑CG‑AAAAATG‑CCCGGGCATTTTGAAAAAATAAGCGACCgc > 2:397527/1‑149 (MQ=255) cAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑Caa < 2:916960/149‑1 (MQ=255) aaCTGTCGGCGATTTTCCTTTATTTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAAt < 2:3594/149‑1 (MQ=255) cTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATaa < 1:2072996/149‑1 (MQ=255) tGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTGT‑GG‑GT‑TTTTGGCTTTTTTCCCACCAATAAGA‑CG‑AAAAATT‑CCCCGGACATGTGTAAAAAAAACCCACAGCGCC‑CAaaaaa > 1:3776515/1‑148 (MQ=255) tGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAAc < 2:156982/149‑1 (MQ=255) cGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTTT‑GG‑TT‑TTTTGGGTTTTTTGCCACCAATAAAA‑AG‑AAAAATGACCCGGGAATT‑TTAAAAAATAAGCGACAACGCGCCAATAAcct > 2:8315/1‑148 (MQ=255) gcgcTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTGT‑GG‑AT‑TTTTCGCTTTTTGCCCCCCATTCATA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATAAGCGACAGCGCG‑CAAAAACCGTtc > 2:124990/1‑149 (MQ=255) gcgcTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTTCGCTTTTTTCCCAGCAATCAGA‑CG‑AAAAATG‑CCCGGGAATTTTTTAAAAATAACAGAACGCGCG‑CAATaaacagta > 2:65996/1‑143 (MQ=255) cgcTTTCCCATTTTGTTGATAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTtct < 1:2905838/149‑1 (MQ=255) gcTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCGGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTtctc < 2:2196243/149‑1 (MQ=255) tCCAGTATGTTGATAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTc < 1:3028893/149‑1 (MQ=255) cAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGGTTTTTGCCCAGCATTAAGA‑CG‑AAAATTG‑CCCGGGCCTTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCAt > 2:3951521/1‑149 (MQ=255) gTATGTTTATAAAAATTTTATTAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATGGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATaa < 1:94706/149‑1 (MQ=255) tATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTGT‑GG‑AT‑TTTTCGCTTTTTGCCCAGCATTAATA‑CG‑AAAAATG‑CCCGGGAATTGTGAAAAAATAAGCGACAGCGCG‑CAATAAACCTTATAGACTCATaaa > 2:1496536/1‑149 (MQ=255) attttGATAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATaaaa < 1:2248391/146‑1 (MQ=255) aTGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTCT‑GG‑AT‑TTTTCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTT‑CCCGGGAAATTTTAAAAAATACGCGACAGCGCG‑CAATAAACGTTAAAGACTCaaaaaa > 2:2393609/1‑149 (MQ=255) aTGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATaaaa < 2:1838784/149‑1 (MQ=255) aTGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTTTTTTTTCT‑GG‑AT‑TTTTCGCTTTTTGCCCCCCAATAAGA‑CG‑AAAATAT‑CCCGGGAATTGTGAAAAAATAATCGACAGCGCG‑CAAAAAACGGTGTCGACTCCTaaaa > 2:1753316/1‑149 (MQ=255) tttgaaaaaaATTTTATTAAAAACGGCCTGCGGGCCTTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGAATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGt < 1:940793/143‑1 (MQ=255) ttGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTTT‑TG‑AT‑TTTTGGGTTTTTTCCCAGCAATAAGA‑CG‑AAAAATT‑CCCCGGGCTTTTTAAAAAATAAGCGACAGCGCG‑CAAAAAACCTTATAGAATCaaaaaaatt > 1:1004504/1‑146 (MQ=255) cTAAAAATTTTATGAAAAAGGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATg < 1:497640/149‑1 (MQ=255) tAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATGT‑CCCGGGCCTTGTGAAAAAATAAGCGACAGCGCG‑CAAAAACCGTTCTAGACTCATAAAAGTTATGc > 2:3343860/1‑149 (MQ=255) tAAAAATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGc < 1:2405930/149‑1 (MQ=255) aaaaATTTTATGAAAAACGGCCTGCGGGCCTTTTTGTTCTGTCT‑GT‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGcc < 1:1801347/149‑1 (MQ=255) | CATGCGCTGGCTCTGCATACTTACACTATTAAGGAGTGGGAAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCT‑GG‑AT‑TTTGCGCTTTTTGCCCAGCATTCAGA‑CG‑AAAATTG‑CCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCC > CP009273/450144‑450435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |