| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 910,669 | A→C | 20.6% | intergenic (‑356/+139) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 910,669 | 0 | A | C | 20.6% | 91.7 / 2.8 | 75 | intergenic (‑356/+139) | ybjE/aqpZ | putative transporter/aquaporin Z |
| Reads supporting (aligned to +/- strand): ref base A (40/11); new base C (10/2); total (59/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCACGC > CP009273/910521‑910817 | cGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGa < 1:3288096/149‑1 (MQ=32) ggggCAGCCCCCATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAt < 1:808300/149‑1 (MQ=17) ggggCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAt < 2:740558/149‑1 (MQ=32) gggCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAtt < 2:3436146/149‑1 (MQ=32) ggCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTg > 2:1728201/1‑149 (MQ=32) gCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTgg > 1:650104/1‑149 (MQ=32) gCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTgg > 1:650120/1‑149 (MQ=32) aGCCCACATGGATGTGGGCTGAGGGCGCGGGGCCCCCCCCCCCAACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGgcc < 2:3917540/149‑1 (MQ=11) caTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGccccc < 1:1232096/149‑1 (MQ=32) caTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGccccc < 1:770124/149‑1 (MQ=32) caTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGccccc < 2:2474748/149‑1 (MQ=32) aTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGCTTGGCCGccccca > 1:3091169/1‑148 (MQ=17) tGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGGGGCGGCGCTTGGGCccccccag > 1:205602/1‑147 (MQ=255) tGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGccccccg > 1:3314436/1‑147 (MQ=17) aTGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg‑‑cgc < 2:3855096/149‑1 (MQ=32) aTGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg‑‑cgc > 2:3202688/1‑149 (MQ=32) tgtgGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg‑‑cgcg > 2:1706588/1‑149 (MQ=32) ggCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTTTTCGCCAGAGCCCGGGGGTGGCGGGGGGGGCGGCGGGTTGGCGCCCCCCg‑‑cccccccc > 1:1450843/1‑142 (MQ=11) gAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGCGGGGGGGGGGGCGGTTTGCCGCCCCCCG‑‑CCCGCTCCATgc > 1:1524690/1‑149 (MQ=11) aGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAtt > 2:3617344/1‑124 (MQ=32) aGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAtt < 1:3617344/124‑1 (MQ=32) gggCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCCCCGCGCAGCGGCGATTTTGTTCGCCCGAGCCCGGGGGTGCAGGGGGGGGCGGCGGGTGGGCGCCCCCGG‑‑CGCGCGCCGTgcgc > 1:1825067/1‑149 (MQ=11) gggCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGCGGGGGGGGCGGGGGGTGGGCGCCCCCCG‑‑CGCGCGCCATgcgc > 1:1825101/1‑149 (MQ=11) ggCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAGTTTGTTCGCCAGAGCCCGGGGGTGCCGGGGGGGGCGGCGCGTGGCCCCCCCCCG‑‑CGCGCGCCGTGCGcc > 1:1818733/1‑149 (MQ=11) gcgTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGt > 2:334123/1‑149 (MQ=32) gcgTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCAG‑‑CGCGCTCCTTGCGCCCGt > 2:453863/1‑149 (MQ=17) aGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGAGGGGGCGGCGGCGATTGGCCGCCCCCAG‑‑CGCGCTCCTTGCGCCAGTGGCAATATg > 2:2783809/1‑149 (MQ=255) gggATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCCGGGGGCGGCGGCGGTTGGGCGCCCCCCG‑‑CGCGCGCCGTGCGCCCGGGGCCAAATGt > 1:465212/1‑149 (MQ=11) gATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCCGGGGGGGGCGGCGCTTGGGCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCCATATTTTg > 1:1989186/1‑149 (MQ=11) tGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGCGGGGGCGGCGGCGCGTGGCCGCCCCCAG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCt > 2:3451667/1‑149 (MQ=14) tACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAg > 2:2730466/1‑149 (MQ=255) aCCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCACTGGCCATATGTTCCTTAGc > 2:2114091/1‑149 (MQ=255) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGGGGCAATATGTTGCTTAGCt > 2:3168877/1‑149 (MQ=255) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCACGGGGCGGCCGCGATTTGCCCCCCCCTG‑‑CGCGCTCCTTGCGCCAGGGGCAATATGTTGCTTATCt > 2:1109860/1‑149 (MQ=14) cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAGTTTGTTCGCCAGAGCCCGGGGGTGGCGGGGGGGGCGGGGGTTTGCCCCCCCCCG‑‑CGCGCGCCCTTCGCCACGTGCCATATGTTGGTTAtctc > 1:3870962/1‑149 (MQ=11) tCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGGGGCGGCGATTTGCCGCCCCCAG‑‑CGCGCTCCGTGCGCCACTGGCCATATGTTGCTTATCTCa > 1:306278/1‑149 (MQ=14) tCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCGTGCGCCAGTGGCACTATGTTGCGTAGCTCa > 2:3962610/1‑149 (MQ=255) gcgcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGCGGGGGGGGGGGGGGTTTGGCGCCCCCAG‑‑CGCGCGCCGTGCGCCCGTGGCAAAATTTTTGTTTGCTCAtt > 1:1219881/1‑148 (MQ=11) gcgcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATg > 2:2526383/1‑149 (MQ=255) cgcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCGTGCGCCCGTGGCAAAATGTTGCGTAGCTCATGa > 2:856720/1‑149 (MQ=255) cGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGGGTGGCCGCCCCCCG‑‑CGCCCGCCCTGCGCCCCGGGCAAAATGTTTCTTATGTCATGGAAgg > 1:1478560/1‑149 (MQ=11) aCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAGTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCCTGAAAGGAg > 2:3607358/1‑149 (MQ=255) ggTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGCTTGGCCGCCCCCTG‑‑CGCGCTCCTTTCGCCAGTGGCAAAATTTTGCTTATCTAAAGAAAGGTGCGca > 1:2285484/1‑149 (MQ=14) ggTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCACGGGGCGGCGGCGGATGGCCGCCCCCAG‑‑CGCCCACCATGCGCCCCTGGCAAAATTTTGCTTATCTCATGAAACGAGCGca > 1:3200464/1‑149 (MQ=14) cGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCCCTTTGGCGCCCCCGG‑‑CGCGCGCCTTGCGCCACTGGCAAAATGTTTCTTAGCACAATAAAGGAGCGcaacaaaa > 2:1426214/1‑147 (MQ=17) gggATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCAG‑‑CGCGCTCCTTGCGCCACTGGCAATATGTTTCTTAGCTCATGAAAGGAGCGCAACAAGaagatg > 2:3772695/1‑149 (MQ=255) ggATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGCGTGGCCGCCCCCAG‑‑CGCGCTCCCTGCGCAAGTGGCAAAAATTTGCTTATCGCATGAAAGGAGCGCAACAACAagatga > 1:979097/1‑149 (MQ=17) aGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCaa > 2:3437305/1‑149 (MQ=255) gTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATaaaa > 2:3934954/1‑148 (MQ=255) gggCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAGTGGCCGGCCCCTG‑‑CGCGCGCCGTGCGCCACTGGCAATATGTTGGTTAGCTAATGAAAGGAGCGCAACCAGATGATGAATCAACAtata > 2:223423/1‑149 (MQ=21) ggCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAGTGGCCGCCCCCAG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCGTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACAAATaa > 2:941573/1‑149 (MQ=255) gCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGCTTGGCCGCCCCCGG‑‑CGCGCTCCTTGCGCCCGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATAAACATATaac > 2:3519203/1‑149 (MQ=255) cgcgCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGAGGGGGCGGGGGCGAATTGCCGCCCCCAG‑‑CGCGCTCCATTCGCCCCTGGCCAAATTTTTCTTATCTCATGAAAGGTGCGCAACAAAATGATTAAAAAACAAATaaaaaaa > 1:2068988/1‑147 (MQ=9) gcgcAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTTGCCGCCCCCTG‑‑CCCGCTCCTTGCGCCAGTGGCAATAAGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATTATTCATACACATATAACAAAAt > 2:2166145/1‑149 (MQ=18) aTTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCATGCGCCAGGGGCAAAATGTTGCTTAGCTCATGTAAGGAGCGCAACAAGATGTTGTATCAACATATAAAAAACTCTTAAAAAAAg > 1:3711740/1‑149 (MQ=21) ttttGTTCGCCAGAGCCCGGGGGTGCAGGGGGGGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCGCCGTGCGCCAGTGGCAATATTTTTCTTAGCTCATTAAAGGTGCGCAACAAGAATATGAATCAAAAAATAAAAACAACTTAAAAAAAgg > 1:616105/1‑149 (MQ=18) ttttGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCCATTGGGCCCCCCCAG‑‑CGCGCTCCATGCGCCACTGGCAAAATTTTTCTTATCGCAATGAATGAGCGCAACAAGATGATGTATAAAAAAATAACAACAACTTaaaaaaaat > 1:3566635/1‑147 (MQ=12) tttGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGCATGGCCGCCCCCAG‑‑CGCGCGCCTTGCGCCCGTGGCCATATTTTGCTTAGCTCATGTAAGGAGCGCAAAAACATGATGAATCAACATATAACAACAACTTAAAAAAAGGc > 2:1423392/1‑149 (MQ=25) ttggccgcccgcgcccgGGGGGGCGGGGGGCGCGGGCGCGGGGCCCCCCCCCG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGcc < 2:2657110/144‑1 (MQ=255) gCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTTCGCCAGGGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAAACAACATATAACAACATCATAAAAAAAGGCCTGACAt > 2:2847179/1‑149 (MQ=255) gCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACAGATAACCACATCTTAAAAAAAGGCCAGACAt > 2:2847170/1‑149 (MQ=255) cccgcgCCGGGGGGGGCGGGGGGCGGGGGCTAGGGCCCCCCCCCCC‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACAtt < 2:2068988/144‑1 (MQ=37) gggggggggggGCGGGGGGGGGGGGC‑TTTGGCCCCCCCCCGC‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGc < 2:3314436/144‑1 (MQ=255) gCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCACCGTTCGCCAGTGGCAAAATTTTTCTTATCTAAAGAAACGAGCGCAACAAAATTATGAAAAAACAAATAACAAAAAAATAAAAAAAAGCCAGACAATaaccc > 2:19927/1‑145 (MQ=12) gcGGGGGGGGGGGGGGGGGGGGGGCTTGGGCCCCCCCCGCCCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGcc < 2:3977542/148‑1 (MQ=255) ggggTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGcc > 2:2510622/1‑149 (MQ=255) gggggggggggCGGCGGCGTGGCGCCCCCCCCGC‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCtt < 1:1733313/143‑1 (MQ=38) gCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTg > 1:3560242/1‑149 (MQ=255) gggggCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGt > 1:584283/1‑149 (MQ=255) ggggggggggCGGTGGCCCCCCCCCGGC‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGt < 2:798193/149‑1 (MQ=255) ggggCGGGCGCGAGGGGCCGCCCCCGC‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGtt < 2:3312138/149‑1 (MQ=255) gcggcgATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGttaattaa > 2:3478553/1‑149 (MQ=255) gcggcgATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGttaattaa > 2:3478547/1‑149 (MQ=255) gcgATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCCGGCCTTCTGCGTTAATTAATCa > 2:3882852/1‑149 (MQ=255) gcgATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCa > 1:2694649/1‑149 (MQ=255) gcgATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCa > 2:3882253/1‑149 (MQ=255) aTTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCACGc > 1:2926979/1‑149 (MQ=255) aTTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCACGc > 2:727920/1‑149 (MQ=255) aTTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCACGc > 2:2789821/1‑149 (MQ=255) | CGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCACGC > CP009273/910521‑910817 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |