Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,207,958 G→T 15.4% intergenic (‑499/+201) iraM ← / ← ycgX RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,207,9580GT15.4% 567.0 / 17.0 220intergenic (‑499/+201)iraM/ycgXRpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein
Reads supporting (aligned to +/- strand):  ref base G (65/114);  new base T (39/2);  total (104/116)
Fisher's exact test for biased strand distribution p-value = 7.53e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 222 total aligned reads displayed.

AGAATAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCAT  >  CP009273/1207810‑1208106
                                                                                                                                                    |                                                                                                                                                     
agaATAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATg                                                                                                                                                       >  1:1416293/1‑149 (MQ=255)
 gaATAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGt                                                                                                                                                     <  2:1455849/149‑1 (MQ=255)
 gaATAAGGCTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGt                                                                                                                                                     <  2:633703/149‑1 (MQ=255)
   aTAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTa                                                                                                                                                   >  2:3380199/1‑149 (MQ=255)
    tAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTaa                                                                                                                                                  >  2:887073/1‑149 (MQ=255)
    tAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTaa                                                                                                                                                  >  2:1341959/1‑149 (MQ=255)
      aGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTTTTTTTATAAATATGTTAAcc                                                                                                                                                >  2:1912531/1‑149 (MQ=255)
      aGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTTTAAATATTTTaaaa                                                                                                                                                >  1:921049/1‑147 (MQ=255)
      aGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTaaac                                                                                                                                                >  1:3982717/1‑147 (MQ=255)
      aGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATTTTaaac                                                                                                                                                >  1:558157/1‑147 (MQ=255)
       ggTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACg                                                                                                                                               >  1:274640/1‑149 (MQ=255)
        gTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTTTAAATATTTTaaacct                                                                                                                                              >  1:307088/1‑145 (MQ=255)
        gTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGt                                                                                                                                              <  2:1096380/149‑1 (MQ=255)
          ttCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACCTGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTta                                                                                                                                            <  1:2246922/149‑1 (MQ=255)
             aaTTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATaa                                                                                                                                         >  2:623497/1‑149 (MQ=255)
               tttttGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAACCCTTATaaaa                                                                                                                                       >  1:1986410/1‑149 (MQ=255)
               tttttGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATaaaa                                                                                                                                       <  2:3795890/149‑1 (MQ=255)
               tttttGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTTTTAAAATGTTTAAAGTTATaaaa                                                                                                                                       >  1:1046255/1‑149 (MQ=255)
               tttgtGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATaaaa                                                                                                                                       <  2:3932301/149‑1 (MQ=255)
                 tttGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCCCGGCCGTGGTTTTTTTAAAAATTTTAAACGATATaaaaaa                                                                                                                                     >  1:1051586/1‑147 (MQ=255)
                 tttGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGGTTTTATAAAAATTTTAAACGTTATAAAATa                                                                                                                                     >  1:2883334/1‑149 (MQ=255)
                   tGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAAc                                                                                                                                   <  1:2755714/149‑1 (MQ=255)
                      gTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTa                                                                                                                                <  2:2771602/149‑1 (MQ=255)
                       ttATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTAt                                                                                                                               <  1:3467056/149‑1 (MQ=255)
                       ttATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTTTAAATATGTTAAACGTTATAAAATAAAGTAt                                                                                                                               >  1:2342471/1‑149 (MQ=255)
                          tataGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGGTTTTTTTAATTTTTTTAAAGTTTTAAAATAAAGTATCaa                                                                                                                            >  1:373358/1‑149 (MQ=255)
                                aaTGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCCCGGCCGTTGTTTTTTTAAATATGTTTAACGGTTTAAAATAAAGTATCACAAGTCa                                                                                                                      >  2:17667/1‑149 (MQ=255)
                                aaTGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATAAAAAGTCa                                                                                                                      >  2:1981091/1‑149 (MQ=255)
                                aaTGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAACGTATCAAAAGTCa                                                                                                                      >  2:2411368/1‑149 (MQ=255)
                                 aTGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTTTAAATATGTTAACCGTTATAAAATAACGTATAAAAAGTCaa                                                                                                                     >  1:3425523/1‑149 (MQ=255)
                                  tGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCCCGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAAAGTATCAAAAGTCAAg                                                                                                                    >  2:555523/1‑149 (MQ=255)
                                   gATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGt                                                                                                                   >  2:504163/1‑149 (MQ=255)
                                   gATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGt                                                                                                                   >  2:3492952/1‑149 (MQ=255)
                                   gATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGt                                                                                                                   <  1:679910/149‑1 (MQ=255)
                                    aTTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTg                                                                                                                  <  2:958081/149‑1 (MQ=255)
                                    aTTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTg                                                                                                                  <  2:327523/149‑1 (MQ=255)
                                     tttAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGa                                                                                                                 <  2:1845242/149‑1 (MQ=255)
                                      ttAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGAt                                                                                                                <  1:1432068/149‑1 (MQ=255)
                                         aCCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATaac                                                                                                             >  2:2782982/1‑149 (MQ=255)
                                         aCCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATGTTAACCGTTATAAAATAACGTTTCAAAAGTCCAGTGATcac                                                                                                             >  2:1217250/1‑149 (MQ=255)
                                         aCCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATGTTAAACGTTATAAAAAAAAGTATAAAAAGTAAAGTGAtgaa                                                                                                             >  1:4100248/1‑146 (MQ=255)
                                             gTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTTTTAAAATGTTTAAACGTATAAAAAAAAATTTAAAAAGTAAAGGGATGACAatt                                                                                                         >  1:1888686/1‑149 (MQ=255)
                                                    gCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAatat                                                                                                  <  1:3559171/149‑1 (MQ=255)
                                                         aaTACATATAACCGGTTGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGt                                                                                             <  2:709973/149‑1 (MQ=255)
                                                         aaTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATTTTAACCGTTATAAAAAAACGGATCAAAAGTCAAGTGATCACAATTAAAATATAAAGt                                                                                             >  2:790454/1‑149 (MQ=255)
                                                          aTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGtt                                                                                            <  2:2451611/149‑1 (MQ=255)
                                                            aCATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGa                                                                                          <  1:64902/149‑1 (MQ=255)
                                                               tataACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTTTAAATATGTTAAACGTTATAAAATAAAGTATCAAAAATAAACTGATAACAATTCAAATATAAAGTTGATAg                                                                                       >  1:298515/1‑149 (MQ=255)
                                                               tataACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGGTTTTTTAAATAATTTAACCCGTATAAAAAAACGAATCAAAAGTGCAGGGTAGACAATTAAAATATCAAATTGATat                                                                                       >  1:3924799/1‑148 (MQ=255)
                                                                 taACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTa                                                                                     <  2:3486603/149‑1 (MQ=255)
                                                                 taACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTa                                                                                     <  2:1393807/149‑1 (MQ=255)
                                                                  aaCCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAACTGATCACATTTCAAATATAAAGTTGAtattat                                                                                    >  2:2491537/1‑149 (MQ=255)
                                                                  aaCCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGGGTTTATAAATATTTTAACCGGTATAAAATAAATGATAAAAATTAACGTGATCACAATTAAAATATCAAGTTGAttttat                                                                                    >  1:655817/1‑144 (MQ=255)
                                                                   aCCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTAtt                                                                                   <  1:2185837/149‑1 (MQ=255)
                                                                   aCCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTAtt                                                                                   >  2:1687867/1‑149 (MQ=255)
                                                                   aCCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTAtt                                                                                   <  1:110387/149‑1 (MQ=255)
                                                                    ccGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTa                                                                                  <  1:3612457/149‑1 (MQ=255)
                                                                     cGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAg                                                                                 <  1:3562680/149‑1 (MQ=255)
                                                                      ggATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGt                                                                                <  1:1698266/149‑1 (MQ=255)
                                                                                tAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGGTTTTTTAAATATGTTAACCGTTATAAAAAAAACTATAAAAATTAAAGTGATCACATTTAAAATATAAAGTTTTTATTATTATTGTGGTGgttt                                                                      >  1:1227546/1‑148 (MQ=255)
                                                                                 aaaCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTTTAAATATTTTAAACGTTATAAAATAACGTATCAAAAATCAAGTGATAACATTTAAAATATCAAGTTGATAGTATTAGTCTTGGGattat                                                                     >  2:1496774/1‑149 (MQ=255)
                                                                                 aaaCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATAAGTTAACCGTTATAAAATAACGTATAAAAAGTCAATTGATCACATTTCAAATATCAAGTTTATATTATTAGTCTGGTGattat                                                                     >  2:3241984/1‑149 (MQ=255)
                                                                                 aaaCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTTTAAATATTTTAAAAGTTATAAAATAAAAGATAAAAAGTAAAGTTATAAAAATTAAAATATAAAGTTTTTATTATTATTGTTGTGtttat                                                                     >  1:1945135/1‑149 (MQ=255)
                                                                                  aaCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCCAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGattatt                                                                    >  2:3411997/1‑149 (MQ=255)
                                                                                        aaTACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATggg                                                              <  1:2833633/149‑1 (MQ=255)
                                                                                         aTACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGt                                                             <  1:419252/149‑1 (MQ=255)
                                                                                           aCATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGa                                                           <  1:2590069/149‑1 (MQ=255)
                                                                                           aCATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGa                                                           <  1:474170/149‑1 (MQ=255)
                                                                                           aCATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGa                                                           <  1:512491/149‑1 (MQ=255)
                                                                                              tgtgCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACaa                                                        <  1:1618083/149‑1 (MQ=255)
                                                                                               gtgCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAAt                                                       <  2:3201391/149‑1 (MQ=255)
                                                                                                    ttAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATaaaaa                                                  <  2:2350470/149‑1 (MQ=255)
                                                                                                      aaGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGGATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTATTCTGGTGATTATTTATTGGTTACAATaaaaaaa                                                >  2:3729993/1‑147 (MQ=255)
                                                                                                       aGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGAc                                               <  2:344685/149‑1 (MQ=255)
                                                                                                        gTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATAGGTTAACCGTTATAAAAAAAAGTATCAAAATTCAAGTGATCACAATTCAAAAATCAAGTTGTAACTATAAGTCTGGTGGATATTTATTGGTGACAAAAAAAAGaaa                                              >  2:1933958/1‑147 (MQ=255)
                                                                                                          aTTGAAACGGACGTGTGGCACGGCCGTGGTTTTTTTAAAAATTTTAAACCTTATAAAATAAAGTATAAAAATTAAAGTGATAAAATTTAAAATATAAAATTGATATTATTATTATGGGGATTATTTTTTGGTGACaaaaaaaaaaaact                                            >  1:333838/1‑143 (MQ=255)
                                                                                                           ttGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTa                                           <  2:2686436/149‑1 (MQ=255)
                                                                                                                      gtgtGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCa                                <  2:414300/149‑1 (MQ=255)
                                                                                                                       tgtgGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCAt                               <  2:2750411/149‑1 (MQ=255)
                                                                                                                         tgGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATag                             <  2:2168246/149‑1 (MQ=255)
                                                                                                                              cGGCCTTTTTTTTTATAAATATTTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATa                        <  2:3457156/149‑1 (MQ=255)
                                                                                                                                 ccGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGtc                     <  1:614681/149‑1 (MQ=255)
                                                                                                                                 ccGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGtc                     <  1:2234650/149‑1 (MQ=255)
                                                                                                                                 ccGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGtc                     <  1:4053037/149‑1 (MQ=255)
                                                                                                                                 ccGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATACATAGAGATAGta                     >  2:3934479/1‑148 (MQ=255)
                                                                                                                                   gttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGtctc                   <  1:3241984/149‑1 (MQ=255)
                                                                                                                                   gttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGtctc                   <  2:298515/149‑1 (MQ=255)
                                                                                                                                    ttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTctct                  <  2:2883334/149‑1 (MQ=255)
                                                                                                                                        ttttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCAc              >  1:1544533/1‑149 (MQ=255)
                                                                                                                                        ttttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCAc              <  2:307088/149‑1 (MQ=255)
                                                                                                                                         tttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACAGTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACt             <  1:3835252/149‑1 (MQ=255)
                                                                                                                                            ataAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACtttt          <  2:678461/149‑1 (MQ=255)
                                                                                                                                             taAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTa         <  1:1935420/149‑1 (MQ=255)
                                                                                                                                               aaTATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTAtt       <  2:2077861/149‑1 (MQ=255)
                                                                                                                                               aaTATGATAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTAtt       <  2:4100031/149‑1 (MQ=255)
                                                                                                                                                 tatGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTc     <  2:1934874/149‑1 (MQ=255)
                                                                                                                                                 tatGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTc     >  2:1552017/1‑149 (MQ=255)
                                                                                                                                                  atGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTcc    <  1:555523/149‑1 (MQ=255)
                                                                                                                                                   tGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCa   >  1:1274287/1‑149 (MQ=255)
                                                                                                                                                    gTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCAt  <  2:249537/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
AGAATAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCAT  >  CP009273/1207810‑1208106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: