Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 134,028 G→T 100% A153A (GCG→GCT cueO → multicopper oxidase (laccase)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273134,0280GT96.5% 799.4 / 15.3 269A153A (GCG→GCTcueOmulticopper oxidase (laccase)
Reads supporting (aligned to +/- strand):  ref base G (3/7);  new base T (103/156);  total (106/163)
Fisher's exact test for biased strand distribution p-value = 7.45e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Frequency below/above cutoff threshold.

Only 100 of 269 total aligned reads displayed.

TGGAAGTACCGGGTGAAGTCGACGGCGGCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCGATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAGATTGATTATCAACTGGATG  >  CP009273/133883‑134173
                                                                                                                                                 |                                                                                                                                                 
  gAAGTACCGGGTGAAGTCGACGGCGGCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATggg                                                                                                                                              >  2:3716020/1‑149 (MQ=255)
     gTACCGGGTGAAGTCGACGGCGGCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTCGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGggct                                                                                                                                           >  1:297487/1‑149 (MQ=255)
           ggTGAAGTCGACGGCGGCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGctggctgg                                                                                                                                     <  1:2134182/149‑1 (MQ=255)
           ggTGAAGTCGACGGCGGCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGctggctgg                                                                                                                                     <  1:4072597/149‑1 (MQ=255)
               aaGTCGACGGCGGCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTggctgggctg                                                                                                                                 >  2:1644356/1‑149 (MQ=255)
               aaGTCGACGGCGGCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTggctgggctg                                                                                                                                 >  1:2898405/1‑149 (MQ=255)
                aGTCGACGGCGGCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGgctgggctgg                                                                                                                                <  2:782095/149‑1 (MQ=255)
                 gTCGACGGCGGCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCtggt                                                                                                                               >  1:1022948/1‑149 (MQ=255)
                     aCGGCGGCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGgtggtg                                                                                                                           <  2:2502232/149‑1 (MQ=255)
                      cggcggCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGa                                                                                                                          <  2:2037108/149‑1 (MQ=255)
                        gcggcCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGAtt                                                                                                                        <  2:601284/149‑1 (MQ=255)
                          ggcCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGa                                                                                                                      >  2:2479773/1‑149 (MQ=255)
                          ggcCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGa                                                                                                                      >  2:3144024/1‑149 (MQ=255)
                           gcCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGaa                                                                                                                     <  1:382821/149‑1 (MQ=255)
                             ccGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGa                                                                                                                   <  2:832583/149‑1 (MQ=255)
                              cGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGAt                                                                                                                  <  1:4017979/149‑1 (MQ=255)
                              cGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGAt                                                                                                                  >  2:2560816/1‑149 (MQ=255)
                              cGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGAt                                                                                                                  <  1:849637/149‑1 (MQ=255)
                               gCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATg                                                                                                                 >  2:2180020/1‑149 (MQ=255)
                                cAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGa                                                                                                                >  2:3681555/1‑149 (MQ=255)
                                cAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGa                                                                                                                <  2:663940/149‑1 (MQ=255)
                                cAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGa                                                                                                                <  2:663969/149‑1 (MQ=255)
                                  gggAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACg                                                                                                              >  1:3655812/1‑149 (MQ=255)
                                   ggAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACga                                                                                                             >  2:3849952/1‑149 (MQ=255)
                                     aaTTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACgaga                                                                                                           <  2:2544082/149‑1 (MQ=255)
                                     aaTTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACgaga                                                                                                           >  2:1785631/1‑149 (MQ=255)
                                     aaTTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACgaga                                                                                                           <  1:3568933/149‑1 (MQ=255)
                                     aaTTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACgaga                                                                                                           <  2:2117362/149‑1 (MQ=255)
                                     aaTTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACgaga                                                                                                           <  1:2560816/149‑1 (MQ=255)
                                     aaTTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACgaga                                                                                                           >  1:1588059/1‑149 (MQ=255)
                                      attattCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGAt                                                                                                          <  1:791763/149‑1 (MQ=255)
                                      attattCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGAt                                                                                                          <  2:3978783/149‑1 (MQ=255)
                                       ttattCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATc                                                                                                         <  1:1372104/149‑1 (MQ=255)
                                            ccGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGaa                                                                                                    >  1:3419666/1‑149 (MQ=255)
                                             cGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGaaa                                                                                                   <  1:1770462/149‑1 (MQ=255)
                                               ccAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAAtt                                                                                                 <  1:2423243/149‑1 (MQ=255)
                                                  ggTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAAt                                                                                              >  2:2430657/1‑149 (MQ=255)
                                                  ggTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAAt                                                                                              >  2:3466867/1‑149 (MQ=255)
                                                   gTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAAtg                                                                                             <  1:3197585/149‑1 (MQ=255)
                                                    tGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAAtgc                                                                                            >  2:1425633/1‑149 (MQ=255)
                                                     ggCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAAtgct                                                                                           >  1:2642575/1‑149 (MQ=255)
                                                       cAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAAtgctgc                                                                                         <  2:1566442/149‑1 (MQ=255)
                                                       cAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAAtgctgc                                                                                         <  2:491136/149‑1 (MQ=255)
                                                        aaGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCGATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGcc                                                                                        <  1:3384303/149‑1 (MQ=255)
                                                           cgcTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCaaa                                                                                     <  2:3653832/149‑1 (MQ=255)
                                                            gcTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCaaaa                                                                                    <  2:1280590/149‑1 (MQ=255)
                                                            gcTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCaaaa                                                                                    <  2:1187585/149‑1 (MQ=255)
                                                            gcTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCaaaa                                                                                    <  2:1236555/149‑1 (MQ=255)
                                                             cTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAAc                                                                                   <  1:2831976/149‑1 (MQ=255)
                                                             cTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCGATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAAc                                                                                   <  2:185039/149‑1 (MQ=255)
                                                               cGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAg                                                                                 <  1:3409448/149‑1 (MQ=255)
                                                                ggTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGt                                                                                >  1:3883801/1‑149 (MQ=255)
                                                                 gTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTg                                                                               >  1:1943654/1‑149 (MQ=255)
                                                                  tGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTgg                                                                              >  1:2236953/1‑149 (MQ=255)
                                                                   gACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTggg                                                                             <  1:644634/149‑1 (MQ=255)
                                                                       ttgaacgttgaTCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTAt                                                                         >  1:3170984/1‑149 (MQ=255)
                                                                        tgaacgttgaTCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATc                                                                        <  1:304268/149‑1 (MQ=255)
                                                                        tgaacgttgaTCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATc                                                                        <  1:3509402/149‑1 (MQ=255)
                                                                         gaacgttgaTCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCg                                                                       >  1:3092731/1‑149 (MQ=255)
                                                                                gaTCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGt                                                                <  2:559148/149‑1 (MQ=255)
                                                                                gaTCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCGATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGt                                                                <  2:2807989/149‑1 (MQ=255)
                                                                                gaTCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGACAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGt                                                                >  1:3778990/1‑149 (MQ=255)
                                                                                     aCCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCgg                                                           >  1:2848832/1‑149 (MQ=255)
                                                                                       cTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTg                                                         >  1:1082768/1‑149 (MQ=255)
                                                                                       cTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTg                                                         >  1:2146617/1‑149 (MQ=255)
                                                                                        tGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGa                                                        <  2:1022948/149‑1 (MQ=255)
                                                                                          ccGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATc                                                      <  2:3658658/149‑1 (MQ=255)
                                                                                            gCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGt                                                    <  1:3144024/149‑1 (MQ=255)
                                                                                               aCCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGTTTGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCa                                                 <  2:2675820/149‑1 (MQ=255)
                                                                                               aCCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCa                                                 <  1:1682306/149‑1 (MQ=255)
                                                                                               aCCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCa                                                 <  1:2795027/149‑1 (MQ=255)
                                                                                               aCCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCa                                                 <  1:2795040/149‑1 (MQ=255)
                                                                                                 ctgctgGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATTACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAgg                                               <  2:133585/149‑1 (MQ=255)
                                                                                                  tgctgGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGa                                              <  2:1768830/149‑1 (MQ=255)
                                                                                                  tgctgGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGa                                              <  1:2120110/149‑1 (MQ=255)
                                                                                                     tgGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATaa                                           >  2:889170/1‑149 (MQ=255)
                                                                                                     tgGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATaa                                           <  1:2716743/149‑1 (MQ=255)
                                                                                                      ggTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAg                                          >  1:2007321/1‑149 (MQ=255)
                                                                                                        ttCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGaa                                        <  2:3089849/149‑1 (MQ=255)
                                                                                                        ttCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGaa                                        <  2:3751852/149‑1 (MQ=255)
                                                                                                         tCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGaaa                                       <  2:2960743/149‑1 (MQ=255)
                                                                                                           cATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAAtt                                     <  2:3883801/149‑1 (MQ=255)
                                                                                                              ccGCATCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAg                                  >  2:129899/1‑149 (MQ=255)
                                                                                                                  aTCAGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGcc                              >  2:1918122/1‑149 (MQ=255)
                                                                                                                     aGCACGGCAAACCGGGGCGACTGGTGGGTTTGGGGCTGGCTGGGCTGGTGGTTATTGAAGATGACGAGATCCTTAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGAc                           <  1:2784519/149‑1 (MQ=255)
                                                                                                                     aGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTTATTGAAGATGACGAGAGCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCTATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGAc                           <  1:3716020/149‑1 (MQ=255)
                                                                                                                     aGCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGAc                           >  2:784130/1‑149 (MQ=255)
                                                                                                                      gCACGGCAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACg                          >  2:2742574/1‑149 (MQ=255)
                                                                                                                            cAAAACCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAga                    <  1:619721/149‑1 (MQ=255)
                                                                                                                             aaaaCCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAgat                   <  2:3948822/149‑1 (MQ=255)
                                                                                                                              aaaCCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAgatt                  >  1:3186399/1‑149 (MQ=255)
                                                                                                                              aaaCCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAgatt                  >  2:772194/1‑149 (MQ=255)
                                                                                                                               aaCCGGGCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAgattg                 <  2:1450359/149‑1 (MQ=255)
                                                                                                                                 ccGGGCGACCGGTGGCTCTGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAgattgat               <  2:2219525/149‑1 (MQ=255)
                                                                                                                                   gggCGACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCCGATTGATTa             >  2:592566/1‑149 (MQ=255)
                                                                                                                                       gACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAGATTGATTATCaa         <  2:3986178/149‑1 (MQ=255)
                                                                                                                                       gACAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAGATTGATTATCaa         >  1:982107/1‑149 (MQ=255)
                                                                                                                                         cAGGTGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAGATTGATTATCAACt       <  1:2260578/149‑1 (MQ=255)
                                                                                                                                             tGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAGATTGATTATCAACTGGAt   <  1:2057454/149‑1 (MQ=255)
                                                                                                                                             tGGCTATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAGATTGATTATCAACTGGAt   <  2:3533898/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                 
TGGAAGTACCGGGTGAAGTCGACGGCGGCCCGCAGGGAATTATTCCGCCAGGTGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCGCATCAGCACGGCAAAACCGGGCGACAGGTGGCGATGGGGCTGGCTGGGCTGGTGGTGATTGAAGATGACGAGATCCTGAAATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGCCGACGGGCAGATTGATTATCAACTGGATG  >  CP009273/133883‑134173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: